Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

14312284 .. 14313778

Gene Structure 1495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1143900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAGGCCATGCTTCCTCTGAGAGATGGATAGAGACAGACGGAGCGAGAGAGAGAGGGAGAGGAAGGAGTGGGGATCTCATCACCATTACTGCAGATCCTCGATTTCATGAGAGTGGGAGAGGGGGGACAGTCAGAGAAAAGCATGGGGGGCCTTCGGGACTCGCAGACCCCGCGAGAACGACACAGACGGTCTCGCCTCCGTCGTCTTACTCCTCATTTCTCTGTCTCTGGAATCGATCGATCTATTCGAAGAGGATCGACAGTTCTGAAATGGTATTTAGATTGGTAAGGGTTGTGCGTGTGCGGTTGATGATCGTGGAAGCCAGCGACGCCCAGATTGCAACATCGAATCCTCTTCGATCCTTATTCCCAATAGCTCTCCCTCTGATTTGTCATCAGGAATTCAACAATCCCAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.58

Weight (kDa)

10.0

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	174, 307
AclWI	GGATC	4 cut(s)	84, 92, 266, 357
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	409
AloI	GAACNNNNNNTCC	2 cut(s)	250, 282
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw26I	GTCTC	3 cut(s)	29, 199, 233
AlwI	GGATC	4 cut(s)	84, 92, 266, 357
AoxI	GGCC	2 cut(s)	7, 152
ApoI	RAATTY	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	251
BccI	CCATC	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	29, 199, 233
BfmI	CTRYAG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	251
Bsa29I	ATCGAT	2 cut(s)	238, 242
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	199
BseCI	ATCGAT	2 cut(s)	238, 242
BseMII	CTCAG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	9, 154
BshVI	ATCGAT	2 cut(s)	238, 242
BsiEI	CGRYCG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	142, 174
BsmAI	GTCTC	3 cut(s)	29, 199, 233
BsmFI	GGGAC	2 cut(s)	142, 174
BsnI	GGCC	2 cut(s)	9, 154
Bso31I	GGTCTC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
BspACI	CCGC	2 cut(s)	174, 307
BspANI	GGCC	2 cut(s)	9, 154
BspCNI	CTCAG	1 cut(s)	13
BspDI	ATCGAT	2 cut(s)	238, 242
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	4 cut(s)	84, 92, 266, 357
BspT104I	TTCGAA	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	199
BssMI	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	133, 193, 266
Bst6I	CTCTTC	2 cut(s)	248, 363
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	7, 328
BstDEI	CTNAG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	7 cut(s)	79, 100, 242, 246, 261, 318, 365
BstMAI	GTCTC	3 cut(s)	29, 199, 233
BstMBI	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 151, 173, 332, 341
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	76, 97
BstYI	RGATCY	2 cut(s)	76, 97
Bsu15I	ATCGAT	2 cut(s)	238, 242
BsuRI	GGCC	2 cut(s)	9, 154
BsuTUI	ATCGAT	2 cut(s)	238, 242
Cac8I	GCNNGC	2 cut(s)	7, 328
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	152
ClaI	ATCGAT	2 cut(s)	238, 242
CseI	GACGC	1 cut(s)	341
CviAII	CATG	3 cut(s)	11, 110, 146
CviJI	RGCY	4 cut(s)	9, 154, 326, 380
CviKI_1	RGCY	4 cut(s)	9, 154, 326, 380
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	7 cut(s)	78, 99, 241, 245, 260, 317, 364
DpnII	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
Eam1104I	CTCTTC	2 cut(s)	248, 363
EarI	CTCTTC	2 cut(s)	248, 363
Eco31I	GGTCTC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	404
FaeI	CATG	3 cut(s)	14, 113, 149
FaiI	YATR	3 cut(s)	12, 111, 147
FaqI	GGGAC	2 cut(s)	142, 174
FatI	CATG	3 cut(s)	10, 109, 145
FauI	CCCGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	9, 154
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	14, 113, 149
HinfI	GANTC	3 cut(s)	162, 235, 352
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	22, 137, 271, 390
Hpy188III	TCNNGA	4 cut(s)	110, 159, 232, 401
Hpy99I	CGWCG	2 cut(s)	208, 335
HpyAV	CCTTC	2 cut(s)	60, 165
HpyCH4III	ACNGT	3 cut(s)	133, 193, 266
HpyCH4V	TGCA	2 cut(s)	95, 344
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 151, 173, 332, 341
HpyF3I	CTNAG	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	14, 113, 149
Kzo9I	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	217, 340, 350, 386
MalI	GATC	7 cut(s)	78, 99, 241, 245, 260, 317, 364
MboI	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
MboII	GAAGA	2 cut(s)	265, 350
MflI	RGATCY	2 cut(s)	76, 97
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	5 cut(s)	11, 151, 173, 332, 341
NdeII	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
NlaIII	CATG	3 cut(s)	14, 113, 149
NlaIV	GGNNCC	1 cut(s)	153
NspV	TTCGAA	1 cut(s)	251
PagI	TCATGA	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 248
PfeI	GAWTC	2 cut(s)	235, 352
Ple19I	CGATCG	1 cut(s)	242
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	76, 97
PvuI	CGATCG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	114
Sau3AI	GATC	7 cut(s)	76, 97, 239, 243, 258, 315, 362
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	156
SetI	ASST	2 cut(s)	382, 424
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	2 cut(s)	174, 307
TaaI	ACNGT	3 cut(s)	133, 193, 266
TaqI	TCGA	7 cut(s)	103, 238, 242, 251, 261, 350, 361
TasI	AATT	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	235, 352
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	2 cut(s)	57, 192
XapI	RAATTY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.