Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

5540314 .. 5541181

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1064100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCCTCGAATCCGGAGAACGAATCTACAGCCTCGAGAGAGGTCGAGAAGCCTCCGATTGAGCCAGTTCGGCTGCCGACGGTGGAGGAGATGCACGGTCAAGACATTTGGAACAACTGCGCTGTCCGTAGCGTCGTTAGTGGAGTTATGGGTTGTGGGCTTGGGTTGATGATGGGTTTGCTTCTCGGAGCGTTAGACACCCGTATAATGCAAGACGAAATGACTGGTAAACGACAATTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

82

Amino Acids

8.87

Weight (kDa)

4.78

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	166
BfmI	CTRYAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	65, 229
BseAI	TCCGGA	1 cut(s)	13
BseNI	ACTGG	2 cut(s)	65, 229
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	13
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	65, 229
Bst4CI	ACNGT	2 cut(s)	82, 98
BstHHI	GCGC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	122
CseI	GACGC	1 cut(s)	121
CviJI	RGCY	6 cut(s)	5, 32, 52, 64, 73, 160
CviKI_1	RGCY	6 cut(s)	5, 32, 52, 64, 73, 160
Eco88I	CYCGRG	1 cut(s)	34
FaiI	YATR	2 cut(s)	149, 206
Fnu4HI	GCNGC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	74
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	10, 23
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	57, 188
Hpy188III	TCNNGA	4 cut(s)	14, 36, 46, 101
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	2 cut(s)	82, 137
HpyCH4III	ACNGT	2 cut(s)	82, 98
HpyCH4V	TGCA	2 cut(s)	94, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HspAI	GCGC	1 cut(s)	120
Kpn2I	TCCGGA	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	3 cut(s)	27, 78, 210
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	81
MluCI	AATT	1 cut(s)	236
MnlI	CCTC	5 cut(s)	16, 34, 43, 63, 79
MroI	TCCGGA	1 cut(s)	13
MspI	CCGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	10, 23
PkrI	GCNGC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	74
SetI	ASST	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	82, 98
TaqI	TCGA	3 cut(s)	8, 35, 45
TasI	AATT	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	10, 23
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.