Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

8372252 .. 8376754

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1117700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCAGGCCATGCTTCCTCTGAGAGATGGATAGAGACAGACGGAGCGAGAGAGAGAGAGGGAGAGGAAGGAGTGGGGATCTCAGCACCCTTGCTGCAGATCCTCGATTTCATGAGAGTGGGAGAGGGGGGACAGTCAGAGAAAAGCATGGGGGGCCTTCGGGACTCGCAGACCCCGCAAGAACGACACAGACGGTCTCGCCTCCGTCGTCTTACTCCTCATTTCTCTGTCTCTGGAATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.0

Weight (kDa)

6.29

Isoelectric Point (pI)

80.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	2 cut(s)	86, 94
Alw26I	GTCTC	3 cut(s)	29, 201, 235
AlwI	GGATC	2 cut(s)	86, 94
AoxI	GGCC	2 cut(s)	7, 154
ApeKI	GCWGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	29, 201, 235
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	12, 96
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	2 cut(s)	9, 156
BshVI	ATCGAT	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	144, 176
BsmAI	GTCTC	3 cut(s)	29, 201, 235
BsmFI	GGGAC	2 cut(s)	144, 176
BsnI	GGCC	2 cut(s)	9, 156
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	78, 99
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	9, 156
BspCNI	CTCAG	2 cut(s)	13, 95
BspDI	ATCGAT	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	86, 94
BspTNI	GGTCTC	1 cut(s)	201
BssMI	GATC	2 cut(s)	78, 99
Bst4CI	ACNGT	2 cut(s)	135, 195
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	21, 82
BstKTI	GATC	2 cut(s)	81, 102
BstMAI	GTCTC	3 cut(s)	29, 201, 235
BstMBI	GATC	2 cut(s)	78, 99
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 153, 175
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	78, 99
BstYI	RGATCY	2 cut(s)	78, 99
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	9, 156
BsuTUI	ATCGAT	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	3 cut(s)	11, 112, 148
CviJI	RGCY	2 cut(s)	9, 156
CviKI_1	RGCY	2 cut(s)	9, 156
DdeI	CTNAG	2 cut(s)	21, 82
DpnI	GATC	2 cut(s)	80, 101
DpnII	GATC	2 cut(s)	78, 99
Eco31I	GGTCTC	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	154
FaeI	CATG	3 cut(s)	14, 115, 151
FaiI	YATR	3 cut(s)	12, 113, 149
FaqI	GGGAC	2 cut(s)	144, 176
FatI	CATG	3 cut(s)	10, 111, 147
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	9, 156
Hin1II	CATG	3 cut(s)	14, 115, 151
HinfI	GANTC	2 cut(s)	164, 237
Hpy188I	TCNGA	2 cut(s)	22, 139
Hpy188III	TCNNGA	3 cut(s)	112, 161, 234
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	62, 167
HpyCH4III	ACNGT	2 cut(s)	135, 195
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 153, 175
HpyF3I	CTNAG	2 cut(s)	21, 82
Hsp92II	CATG	3 cut(s)	14, 115, 151
Kzo9I	GATC	2 cut(s)	78, 99
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	81
MalI	GATC	2 cut(s)	80, 101
MboI	GATC	2 cut(s)	78, 99
MflI	RGATCY	2 cut(s)	78, 99
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	28, 52, 58, 113, 118, 212, 228
MslI	CAYNNNNRTG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	11, 153, 175
NdeII	GATC	2 cut(s)	78, 99
NlaIII	CATG	3 cut(s)	14, 115, 151
NlaIV	GGNNCC	1 cut(s)	155
PagI	TCATGA	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	2 cut(s)	78, 99
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	78, 99
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	116
SsiI	CCGC	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	135, 195
TaqI	TCGA	2 cut(s)	105, 240
TfiI	GAWTC	1 cut(s)	237
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	2 cut(s)	57, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.