Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

5514759 .. 5517319

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1063700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCGCGGTCAAGACATTTGGAACAACTGCGCCGTCCGAAGCGTCGTTAGTGGAGTTATGGGTGGTGGGCTTGGGTTGATGGTGGGTTTGCTTCTCGGAGCGTTAGACACCCCCATAATGCAAGACGAAATGACTGGTAAACAACAATTCATTTACCAAGCAAAGTCAATGGGCCGGAGGAGTTGGAGTTCTGCAAAAGCATTTGCAGTTATGGGATTGCTTTTCTCAGCTGCCGAGTGTGTTGTTGAACAGCTAAACATGACACAACAAATAGTTGTTGCTGGATGTGCAACTGGAGGTGCACTGTCAGCCAAAGCTGGTCCTCAAGCAGCCTGCATTGGTTGTGCCGGCTTTGCTGCATTTTCGGTGCTGATAGAGAAGTTTTTGGATAGACATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

134

Amino Acids

13.91

Weight (kDa)

7.62

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	10 - 122	1.1e-22	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	248
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AluBI	AGCT	3 cut(s)	230, 253, 317
AluI	AGCT	3 cut(s)	230, 253, 317
Alw21I	GWGCWC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	230, 329, 356
AspLEI	GCGC	2 cut(s)	6, 32
AspS9I	GGNCC	2 cut(s)	172, 320
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	217, 341, 343
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	231, 330, 357
BlsI	GCNGC	3 cut(s)	232, 331, 358
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	172, 320
BpmI	CTGGAG	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	139, 298
BseGI	GGATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	139, 298
BseRI	GAGGAG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	217, 341, 343
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	175, 348
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	139, 298
BssAI	RCCGGY	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	334, 349
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 32
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 308, 353
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	217, 341, 343
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	334, 349
CfoI	GCGC	2 cut(s)	6, 32
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	172, 320
CseI	GACGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	259, 395
CviJI	RGCY	8 cut(s)	70, 174, 230, 253, 311, 317, 332, 351
CviKI_1	RGCY	8 cut(s)	70, 174, 230, 253, 311, 317, 332, 351
DdeI	CTNAG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	320
FaeI	CATG	2 cut(s)	262, 398
FaiI	YATR	5 cut(s)	59, 116, 212, 260, 396
FatI	CATG	2 cut(s)	258, 394
Fnu4HI	GCNGC	3 cut(s)	231, 330, 357
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	231, 330, 357
GlaI	GCGC	2 cut(s)	5, 31
GluI	GCNGC	3 cut(s)	231, 330, 357
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	175, 348
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	6, 32
Hin1II	CATG	2 cut(s)	262, 398
Hin6I	GCGC	2 cut(s)	4, 30
HinP1I	GCGC	2 cut(s)	4, 30
HpaII	CCGG	2 cut(s)	175, 348
Hpy166II	GTNNAC	2 cut(s)	140, 302
Hpy188I	TCNGA	2 cut(s)	38, 98
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	140, 302
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	7 cut(s)	121, 194, 206, 290, 302, 336, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 308, 353
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	262, 398
HspAI	GCGC	2 cut(s)	4, 30
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	7 cut(s)	120, 188, 267, 279, 303, 346, 361
Lsp1109I	GCAGC	3 cut(s)	217, 341, 343
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	171, 290, 333
MroNI	GCCGGC	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	175, 348
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	287, 308, 353
NaeI	GCCGGC	1 cut(s)	349
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	262, 398
NmeAIII	GCCGAG	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	232, 331, 358
PspPI	GGNCC	2 cut(s)	172, 320
PvuII	CAGCTG	1 cut(s)	230
SatI	GCNGC	3 cut(s)	231, 330, 357
Sau96I	GGNCC	2 cut(s)	172, 320
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	4 cut(s)	232, 255, 301, 319
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	306
TasI	AATT	1 cut(s)	146
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	3 cut(s)	230, 329, 356
TspDTI	ATGAA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.