Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Reverse (-)

77965641 .. 77968637

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG496300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCGAAGAGAAGGCAAATGAATCTACAGCTACCAGAGAAGTTGAGAAGGCTCCGATTGAGCCTCTGCGGATGCCCACGGTGGAGGAGATTCGCGGCCAAGATATTTGGAATAACTGTGTTGTGCGCAGTGTCGCTAGTGGAGTTATGGGTGGTGGACTTGGGTTGATGATGGGTTTGTTTCTTGGGGCTTTAGACAACCCAGTAATGCAAGATCAAATGACTGGTAGGCAGCAATTTATATACACAGCAAAGCAGATGGGGTCAAGGAGTTGGGGTTCTGCAAAAGCATTTGCAGTGATGGGATTTGTTTTCTCAGCTGCTGAATGTGTTGTTGAAAAGGCACGGGCTAAGCATGACACAACAAATACAGTTGTTGCGGGATGTGTCACTGGAGGTGCATTGTCAGCAAAAGGTAACCTTTCCCCCCCCCTTCAGTATATCCTTAAGGTGCGTATGATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

155

Amino Acids

16.63

Weight (kDa)

8.5

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	40 - 139	3e-25	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	70, 96, 380
AcoI	YGGCCR	2 cut(s)	3, 97
AcuI	CTGAAG	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	2 cut(s)	32, 320
AluI	AGCT	2 cut(s)	32, 320
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	3, 97
ApeKI	GCWGC	2 cut(s)	232, 320
AspLEI	GCGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	244, 307
BccI	CCATC	3 cut(s)	166, 253, 295
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	97, 233, 321
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	98, 234, 322
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	3 cut(s)	203, 229, 397
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	78, 389
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	203, 229, 397
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	244, 307
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	5, 99
BsnI	GGCC	2 cut(s)	5, 99
Bsp143I	GATC	1 cut(s)	214
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	3 cut(s)	70, 96, 380
BspANI	GGCC	2 cut(s)	5, 99
BspCNI	CTCAG	1 cut(s)	329
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	203, 229, 397
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	214
Bst4CI	ACNGT	3 cut(s)	82, 119, 373
Bst6I	CTCTTC	1 cut(s)	3
BstAFI	CTTAAG	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	316, 351
BstDSI	CCRYGG	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	78, 389
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	244, 307
BsuRI	GGCC	2 cut(s)	5, 99
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	78, 389
BtsI	GCAGTG	2 cut(s)	136, 303
BtsIMutI	CAGTG	3 cut(s)	136, 303, 390
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	129
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	8 cut(s)	5, 32, 53, 64, 99, 191, 320, 350
CviKI_1	RGCY	8 cut(s)	5, 32, 53, 64, 99, 191, 320, 350
DdeI	CTNAG	2 cut(s)	316, 351
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	2 cut(s)	3, 97
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
FaeI	CATG	1 cut(s)	359
FaiI	YATR	6 cut(s)	149, 242, 244, 357, 441, 458
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	97, 233, 321
FokI	GGATG	2 cut(s)	85, 396
Fsp4HI	GCNGC	3 cut(s)	97, 233, 321
FspBI	CTAG	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	3 cut(s)	97, 233, 321
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	5, 99
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	23, 91
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	7, 43, 443
HpyCH4III	ACNGT	3 cut(s)	82, 119, 373
HpyCH4V	TGCA	4 cut(s)	211, 284, 296, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	2 cut(s)	316, 351
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	4 cut(s)	49, 210, 216, 378
Lsp1109I	GCAGC	2 cut(s)	244, 307
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	388, 416
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	1 cut(s)	236
MnlI	CCTC	3 cut(s)	75, 79, 389
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	23, 91
PkrI	GCNGC	3 cut(s)	98, 234, 322
PspEI	GGTNACC	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	97, 233, 321
Sau3AI	GATC	1 cut(s)	214
SetI	ASST	6 cut(s)	34, 322, 400, 418, 423, 453
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	3 cut(s)	70, 96, 380
SspMI	CTAG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	82, 119, 373
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	23, 91
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	3 cut(s)	136, 303, 397
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	232, 320
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	136, 303, 397
Vha464I	CTTAAG	1 cut(s)	446
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.