AT3G10500

positive regulation of transcription, DNA-templated

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
3271217 .. 3274176
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10500.2

Sequence Viewer

Length: 1650 bp
ATGGGTCGTGGCTCAGTAACATCGCTCGCTCCTGGGTTTCGTTTTCATCCCACAGACGAAGAACTCGTTCGTTACTATCTGAAACGAAAGATCTGCAATAAACCTTTTAAGTTCGATGCTATCTCTGTTACCGATGTATACAAATCTGAGCCTTGGGATCTCCCAGACAAGTCGAGGCTGAAAAGTAGAGACTTGGAGTGGTACTTCTTCAGTATGCTTGATAAGAAGTATAGAAATGGATCAAAGACGAATCGTGCGACTGAGATGGGATATTGGAAGACTACAGGGAAAGATCGAGAGATTCTTAATGGTTCAAAAGTCGTTGGGATGAAGAAGACTCTTGTTTATCACAAAGGTCGAGCTCCTCGTGGCGAAAGAACCAATTGGGTTATGCATGAGTATCGGTTGGTTGATCAAGACCTTGATAAAACTGGTGTTCACCAAGATGCGTTTGTGCTTTGTAGGATTTTTCAGAAGAGTGGCTCCGGACCTAAAAATGGAGAGCAGTACGGTGCTCCGTTTGTTGAGGAGGAGTGGGAGGAGGAGGATGATATGACATTTGTACCTGACCAAGAAGATCTTGGAAGTGAAGATCATGTTTATGTCCATATGGATGACATTGATCAGAAGTCTGAAAACTTTGTGGTCTATGATGCCATTCCTATTCCGTTAAACTTTATTCACGGGGAGTCGAGCAATAATGTTGAAACAAACTACTCAGACTCCATAAACTATATACAACAAACAGGAAACTATATGGACTCTGGTGGCTACTTTGAGCAACCAGCAGAATCTTATGAGAAAGATCAGAAGCCTATCATCCGTGACCGTGATGGTAGCCTTCAAAATGAAGGAATTGGATGTGGGGTCCAGGACAAGCACTCGGAAACTTTGCAATCTTCTGACAACATCTTTGGGACTGATACATCATGCTACAATGATTTTCCAGTTGAGAGCAACTATTTGATTGGTGAGGCGTTTCTGGATCCGAACAGTAATCTTCTGGAGAATGATGGTCTGTACCTGGAAACAAATGATCTCAGTAGTACTCAGCAAGATGGTTTCGACTTTGAAGATTATCTTACCTTCTTTGATGAAACTTTTGATCCTTCGCAACTGATGGGAAATGAAGATGTTTTTTTCGATCAAGAAGAGCTCTTTCAAGAGGTTGAGACTAAGGAACTAGAGAAAGAGGAGACTTCAAGAAGCAAACATGTGGTGGAAGAAAAGGAAAAGGATGAAGCATCTTGTTCAAAACAAGTTGATGCAGATGCAACAGAGTTTGAGCCAGATTACAAGTACCCGTTACTAAAGAAGGCAAGCCACATGTTGGGTGCTATTCCTGCTCCGCTTGCAAATGCTTCTGAGTTCCCTACAAAGGATGCAGCTATCCGGTTACACGCAGCACAATCATCAGGTTCAGTTCATGTAACCGCAGGTATGATCACGATATCAGACAGCAACATGGGCTGGTCATACGGCAAAAACGAGAACCTTGACTTGATCCTTTCTTTGGGGTTGGTCCAAGGGAATACCGCCCCCGAAAAATCAGGGAATAGTTCAGCATGGGCAATGTTAATATTCATGTGTTTCTGGGTTCTTCTACTCTCAGTTAGTTTCAAAGTGAGCATTTTGGTCTCTTCCAGGTGA

Protein Analysis

549

Amino Acids

62.36

Weight (kDa)

4.63

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1427
AccB7I CCANNNNNTGG 1 cut(s) 1330
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 485
AciI CCGC 3 cut(s) 1349, 1434, 1536
AclWI GGATC 6 cut(s) 165, 247, 980, 993, 1100, 1498
AcuI CTGAAG 1 cut(s) 193
AfaI GTAC 6 cut(s) 203, 509, 564, 1022, 1048, 1301
AfiI CCNNNNNNNGG 4 cut(s) 497, 1330, 1378, 1513
AflIII ACRYGT 2 cut(s) 1213, 1326
AgsI TTSAA 8 cut(s) 315, 707, 845, 1073, 1163, 1203, 1254, 1621
AjnI CCWGG 4 cut(s) 31, 870, 1023, 1643
AluBI AGCT 3 cut(s) 362, 1156, 1388
AluI AGCT 3 cut(s) 362, 1156, 1388
Alw21I GWGCWC 3 cut(s) 364, 517, 1158
Alw26I GTCTC 4 cut(s) 183, 1166, 1190, 1642
AlwI GGATC 6 cut(s) 165, 247, 980, 993, 1100, 1498
Aor13HI TCCGGA 1 cut(s) 485
ApeKI GCWGC 2 cut(s) 1385, 1403
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 488, 868, 1522
AsuHPI GGTGA 2 cut(s) 431, 983
AvaII GGWCC 3 cut(s) 488, 868, 1522
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BamHI GGATCC 1 cut(s) 985
BanII GRGCYC 2 cut(s) 364, 1158
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 284, 341
Bbv12I GWGCWC 3 cut(s) 364, 517, 1158
BbvI GCAGC 2 cut(s) 1397, 1415
BccI CCATC 5 cut(s) 259, 827, 1007, 1052, 1114
BceAI ACGGC 1 cut(s) 1495
BcgI CGANNNNNNTGC 4 cut(s) 75, 109, 383, 417
BciT130I CCWGG 4 cut(s) 33, 872, 1025, 1645
BclI TGATCA 3 cut(s) 412, 622, 1443
BcoDI GTCTC 4 cut(s) 183, 1166, 1190, 1642
BfaI CTAG 1 cut(s) 1184
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 1427
BglII AGATCT 2 cut(s) 90, 577
BisI GCNGC 2 cut(s) 1386, 1404
BlsI GCNGC 2 cut(s) 1387, 1405
BmcAI AGTACT 1 cut(s) 1048
Bme1390I CCNGG 4 cut(s) 33, 872, 1025, 1645
Bme18I GGWCC 3 cut(s) 488, 868, 1522
BmgT120I GGNCC 3 cut(s) 488, 868, 1522
BmiI GGNNCC 3 cut(s) 484, 869, 987
BmrFI CCNGG 4 cut(s) 33, 872, 1025, 1645
BmsI GCATC 7 cut(s) 106, 436, 643, 1253, 1255, 1261, 1372
BpiI GAAGAC 2 cut(s) 284, 341
BpmI CTGGAG 1 cut(s) 1025
BsaI GGTCTC 1 cut(s) 1642
BsaJI CCNNGG 3 cut(s) 32, 152, 1525
BsaWI WCCGGW 2 cut(s) 485, 1392
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 4 cut(s) 497, 1330, 1378, 1513
Bse1I ACTGG 2 cut(s) 436, 947
Bse3DI GCAATG 1 cut(s) 1578
BseAI TCCGGA 1 cut(s) 485
BseBI CCWGG 4 cut(s) 33, 872, 1025, 1645
BseDI CCNNGG 3 cut(s) 32, 152, 1525
BseGI GGATG 8 cut(s) 46, 333, 553, 619, 819, 866, 1243, 1387
BseLI CCNNNNNNNGG 4 cut(s) 497, 1330, 1378, 1513
BseMI GCAATG 1 cut(s) 1578
BseMII CTCAG 8 cut(s) 27, 138, 252, 732, 1054, 1064, 1356, 1623
BseNI ACTGG 2 cut(s) 436, 947
BseRI GAGGAG 6 cut(s) 354, 542, 545, 554, 557, 1208
BseXI GCAGC 2 cut(s) 1397, 1415
BsiHKAI GWGCWC 3 cut(s) 364, 517, 1158
BsiSI CCGG 2 cut(s) 486, 1393
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 4 cut(s) 497, 1330, 1378, 1513
BsmAI GTCTC 4 cut(s) 183, 1166, 1190, 1642
BsmFI GGGAC 1 cut(s) 931
Bso31I GGTCTC 1 cut(s) 1642
Bsp1286I GDGCHC 3 cut(s) 364, 517, 1158
Bsp13I TCCGGA 1 cut(s) 485
BspACI CCGC 3 cut(s) 1349, 1434, 1536
BspCNI CTCAG 8 cut(s) 26, 139, 253, 731, 1053, 1063, 1357, 1622
BspEI TCCGGA 1 cut(s) 485
BspLI GGNNCC 3 cut(s) 484, 869, 987
BspMI ACCTGC 1 cut(s) 1427
BspPI GGATC 6 cut(s) 165, 247, 980, 993, 1100, 1498
BspQI GCTCTTC 1 cut(s) 1146
BspTNI GGTCTC 1 cut(s) 1642
BsrDI GCAATG 1 cut(s) 1578
BsrI ACTGG 2 cut(s) 436, 947
BssECI CCNNGG 3 cut(s) 32, 152, 1525
BssNAI GTATAC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 152, 1525
Bst1107I GTATAC 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 4 cut(s) 33, 872, 1025, 1645
Bst4CI ACNGT 3 cut(s) 512, 830, 995
Bst6I CTCTTC 3 cut(s) 470, 1146, 1645
BstC8I GCNNGC 3 cut(s) 27, 1321, 1353
BstDEI CTNAG 9 cut(s) 13, 147, 261, 718, 1040, 1050, 1176, 1365, 1609
BstF5I GGATG 8 cut(s) 46, 333, 553, 619, 819, 866, 1243, 1387
BstMAI GTCTC 4 cut(s) 183, 1166, 1190, 1642
BstMWI GCNNNNNNNGC 3 cut(s) 1343, 1352, 1467
BstNI CCWGG 4 cut(s) 33, 872, 1025, 1645
BstNSI RCATGY 2 cut(s) 1217, 1330
BstSCI CCNGG 4 cut(s) 31, 870, 1023, 1643
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 1397, 1415
BstV2I GAAGAC 2 cut(s) 284, 341
BstX2I RGATCY 4 cut(s) 90, 157, 577, 985
BstYI RGATCY 4 cut(s) 90, 157, 577, 985
BstZ17I GTATAC 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 8 cut(s) 46, 333, 553, 619, 819, 866, 1243, 1387
BveI ACCTGC 1 cut(s) 1427
Cac8I GCNNGC 3 cut(s) 27, 1321, 1353
Cfr13I GGNCC 3 cut(s) 488, 868, 1522
Csp6I GTAC 6 cut(s) 202, 508, 563, 1021, 1047, 1300
CviAII CATG 9 cut(s) 395, 596, 930, 1214, 1327, 1427, 1465, 1566, 1585
CviQI GTAC 6 cut(s) 202, 508, 563, 1021, 1047, 1300
DdeI CTNAG 9 cut(s) 13, 147, 261, 718, 1040, 1050, 1176, 1365, 1609
Eam1104I CTCTTC 3 cut(s) 470, 1146, 1645
EarI CTCTTC 3 cut(s) 470, 1146, 1645
Ecl136II GAGCTC 2 cut(s) 362, 1156
Eco130I CCWWGG 2 cut(s) 152, 1525
Eco24I GRGCYC 2 cut(s) 364, 1158
Eco31I GGTCTC 1 cut(s) 1642
Eco32I GATATC 1 cut(s) 1452
Eco47I GGWCC 3 cut(s) 488, 868, 1522
Eco53kI GAGCTC 2 cut(s) 362, 1156
Eco57I CTGAAG 1 cut(s) 193
EcoICRI GAGCTC 2 cut(s) 362, 1156
EcoRII CCWGG 4 cut(s) 31, 870, 1023, 1643
EcoRV GATATC 1 cut(s) 1452
EcoT14I CCWWGG 2 cut(s) 152, 1525
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 2 cut(s) 364, 1158
ErhI CCWWGG 2 cut(s) 152, 1525
FaeI CATG 9 cut(s) 398, 599, 933, 1217, 1330, 1430, 1468, 1569, 1588
FalI AAGNNNNNCTT 4 cut(s) 564, 596, 1065, 1097
FaqI GGGAC 1 cut(s) 931
FatI CATG 9 cut(s) 394, 595, 929, 1213, 1326, 1426, 1464, 1565, 1584
FauNDI CATATG 1 cut(s) 609
FbaI TGATCA 3 cut(s) 412, 622, 1443
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 1386, 1404
FokI GGATG 8 cut(s) 33, 340, 560, 626, 806, 873, 1250, 1394
FriOI GRGCYC 2 cut(s) 364, 1158
Fsp4HI GCNGC 2 cut(s) 1386, 1404
FspBI CTAG 1 cut(s) 1184
GluI GCNGC 2 cut(s) 1386, 1404
GsuI CTGGAG 1 cut(s) 1025
HapII CCGG 2 cut(s) 486, 1393
Hin1II CATG 9 cut(s) 398, 599, 933, 1217, 1330, 1430, 1468, 1569, 1588
HinfI GANTC 7 cut(s) 250, 301, 337, 689, 722, 761, 791
HpaII CCGG 2 cut(s) 486, 1393
HphI GGTGA 2 cut(s) 431, 983
Hpy166II GTNNAC 2 cut(s) 139, 439
Hpy188III TCNNGA 9 cut(s) 296, 416, 486, 983, 1004, 1148, 1163, 1203, 1447
Hpy8I GTNNAC 2 cut(s) 139, 439
HpyAV CCTTC 5 cut(s) 845, 851, 1096, 1119, 1309
HpyCH4III ACNGT 3 cut(s) 512, 830, 995
HpyCH4V TGCA 7 cut(s) 96, 394, 895, 1268, 1274, 1355, 1385
HpyF10VI GCNNNNNNNGC 3 cut(s) 1343, 1352, 1467
HpyF3I CTNAG 9 cut(s) 13, 147, 261, 718, 1040, 1050, 1176, 1365, 1609
Hsp92II CATG 9 cut(s) 398, 599, 933, 1217, 1330, 1430, 1468, 1569, 1588
Kpn2I TCCGGA 1 cut(s) 485
Ksp22I TGATCA 3 cut(s) 412, 622, 1443
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 5 cut(s) 34, 367, 488, 520, 1351
Lsp1109I GCAGC 2 cut(s) 1397, 1415
LweI GCATC 7 cut(s) 106, 436, 643, 1253, 1255, 1261, 1372
MaeI CTAG 1 cut(s) 1184
MaeIII GTNAC 7 cut(s) 16, 71, 127, 824, 1305, 1395, 1429
MfeI CAATTG 1 cut(s) 382
MflI RGATCY 4 cut(s) 90, 157, 577, 985
MhlI GDGCHC 3 cut(s) 364, 517, 1158
MluCI AATT 2 cut(s) 382, 855
MlyI GAGTC 4 cut(s) 331, 698, 716, 755
Mph1103I ATGCAT 1 cut(s) 396
MroI TCCGGA 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 108, 306, 671, 1577
MslI CAYNNNNRTG 3 cut(s) 444, 600, 612
MspI CCGG 2 cut(s) 486, 1393
MspR9I CCNGG 4 cut(s) 33, 872, 1025, 1645
MunI CAATTG 1 cut(s) 382
MvaI CCWGG 4 cut(s) 33, 872, 1025, 1645
MwoI GCNNNNNNNGC 3 cut(s) 1343, 1352, 1467
NdeI CATATG 1 cut(s) 609
NlaIII CATG 9 cut(s) 398, 599, 933, 1217, 1330, 1430, 1468, 1569, 1588
NlaIV GGNNCC 3 cut(s) 484, 869, 987
NmuCI GTSAC 1 cut(s) 824
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 2 cut(s) 1217, 1330
PciI ACATGT 2 cut(s) 1213, 1326
PciSI GCTCTTC 1 cut(s) 1146
PcsI WCGNNNNNNNCGW 4 cut(s) 63, 254, 364, 1485
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 3 cut(s) 250, 301, 791
PflMI CCANNNNNTGG 1 cut(s) 1330
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 2 cut(s) 1387, 1405
PleI GAGTC 4 cut(s) 331, 697, 716, 755
PpsI GAGTC 4 cut(s) 331, 697, 716, 755
PscI ACATGT 2 cut(s) 1213, 1326
Psp124BI GAGCTC 2 cut(s) 364, 1158
Psp6I CCWGG 4 cut(s) 31, 870, 1023, 1643
PspGI CCWGG 4 cut(s) 31, 870, 1023, 1643
PspN4I GGNNCC 3 cut(s) 484, 869, 987
PspPI GGNCC 3 cut(s) 488, 868, 1522
PsuI RGATCY 4 cut(s) 90, 157, 577, 985
RsaI GTAC 6 cut(s) 203, 509, 564, 1022, 1048, 1301
RsaNI GTAC 6 cut(s) 202, 508, 563, 1021, 1047, 1300
RseI CAYNNNNRTG 3 cut(s) 444, 600, 612
SacI GAGCTC 2 cut(s) 364, 1158
SapI GCTCTTC 1 cut(s) 1146
SaqAI TTAA 4 cut(s) 108, 306, 671, 1577
SatI GCNGC 2 cut(s) 1386, 1404
Sau96I GGNCC 3 cut(s) 488, 868, 1522
ScaI AGTACT 1 cut(s) 1048
SchI GAGTC 4 cut(s) 331, 698, 716, 755
ScrFI CCNGG 4 cut(s) 33, 872, 1025, 1645
SduI GDGCHC 3 cut(s) 364, 517, 1158
SfaNI GCATC 7 cut(s) 106, 436, 643, 1253, 1255, 1261, 1372
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 3 cut(s) 488, 868, 1522
SmiMI CAYNNNNRTG 3 cut(s) 444, 600, 612
Sse9I AATT 2 cut(s) 382, 855
SsiI CCGC 3 cut(s) 1349, 1434, 1536
SspI AATATT 1 cut(s) 1581
SspMI CTAG 1 cut(s) 1184
SstI GAGCTC 2 cut(s) 364, 1158
StyD4I CCNGG 4 cut(s) 31, 870, 1023, 1643
StyI CCWWGG 2 cut(s) 152, 1525
TaaI ACNGT 3 cut(s) 512, 830, 995
TaqI TCGA 7 cut(s) 114, 173, 295, 358, 692, 1065, 1143
TasI AATT 2 cut(s) 382, 855
TatI WGTACW 1 cut(s) 1046
TfiI GAWTC 3 cut(s) 250, 301, 791
Tru1I TTAA 4 cut(s) 108, 306, 671, 1577
Tru9I TTAA 4 cut(s) 108, 306, 671, 1577
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 2 cut(s) 1385, 1403
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 8 cut(s) 35, 344, 864, 1110, 1143, 1254, 1415, 1573
TspGWI ACGGA 3 cut(s) 507, 657, 812
Van91I CCANNNNNTGG 1 cut(s) 1330
VpaK11BI GGWCC 3 cut(s) 488, 868, 1522
XceI RCATGY 2 cut(s) 1217, 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 1184
ZrmI AGTACT 1 cut(s) 1048
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.