Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Reverse (-)

29369916 .. 29371879

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1243800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTCGCGGCAAAGAGAATTCACTCGCTCCTGGGTTCCGATTCCACCCAACCGATGAAGAACTAGTCTGGTACTATCTGAAGCGCAAGGTCTCCGGCAAGAACTTCCGATTCGACCCCATCTCGGTCGTCGACATCTACAAGACTGAGCCTTGGGACCTCCCTGGCAAGTCGAAGCTGAAGACTAGGGACTTGGAGTGGTACTTTTTCAGTTTTCTGGATAAGAAGTATGGGAATTCGTCTAGGACGAATCGGGCTACTGAAAAAGGGTACTGGAAGACTACGGGTAAGGACCGTCCGGTTAAACATAATTCCCGGGATGTTGGGATGAAGAAGACGCTGGTTTTCCATAGCGGGCGAGCCCCCTCCGGTGCCAGAACCAATTGGGTTATGCATGAGTATCGCCTTTCCAATGAGGAATTGGAGAAAGCTGGAATTCAACAGAAGGATCCGTATGTGCTTTGTAGGATATTCCAGAAGAGTGGCACGGGACCGAAGAATGGGGAGAAGTATGGCGCACCGGTTATGGAGGAGGAATGGGACGATGATGACGTGACTTGTGTACCTGGTGAGGAGGCGGCTGCTGATGTAGTGGCACTCAGCGTGGAGCCACATGTGGAAGCAATTGGTGTCAACGATGGGGCTTATGTTGAAGCATTTGACCTTGATCAGAGTTTATCCATCTGCAGTAGCTGTCAGCCTTACATACTTTGTTTAAATTTTAGTTGCATTCTTAAATTTATCTGGAATGCAATACCCTGCCTTTTCTGTCACAAAAAGTTTTCCTCTGTGGAACTTGGCTTATGTAGTTGTGAAATCATGTATTGCATTTTATATAGTCATTCAAAGAGCATCATCAATGTGTGTAACAGTCTAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

294

Amino Acids

33.34

Weight (kDa)

7.01

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 136	1.1e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 354, 578
AclWI	GGATC	2 cut(s)	443, 456
AcsI	RAATTY	5 cut(s)	19, 235, 435, 718, 737
AcuI	CTGAAG	2 cut(s)	101, 200
AfaI	GTAC	4 cut(s)	74, 203, 272, 564
AfiI	CCNNNNNNNGG	2 cut(s)	124, 500
AflIII	ACRYGT	1 cut(s)	613
AgeI	ACCGGT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	440, 653, 846
AhlI	ACTAGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	3 cut(s)	31, 163, 565
AluBI	AGCT	3 cut(s)	178, 431, 693
AluI	AGCT	3 cut(s)	178, 431, 693
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	443, 456
AlwNI	CAGNNNCTG	1 cut(s)	693
Ama87I	CYCGRG	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	5 cut(s)	19, 235, 435, 718, 737
AsiGI	ACCGGT	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	87, 518
AspS9I	GGNCC	3 cut(s)	157, 292, 491
AsuC2I	CCSGG	2 cut(s)	316, 317
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	3 cut(s)	157, 292, 491
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	3 cut(s)	188, 284, 341
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	3 cut(s)	128, 632, 689
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	3 cut(s)	33, 165, 567
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	316, 317
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	4 cut(s)	65, 186, 243, 880
BfmI	CTRYAG	1 cut(s)	685
BisI	GCNGC	3 cut(s)	10, 579, 582
BlsI	GCNGC	3 cut(s)	11, 580, 583
Bme1390I	CCNGG	5 cut(s)	33, 165, 316, 317, 567
Bme18I	GGWCC	3 cut(s)	157, 292, 491
BmeT110I	CYCGRG	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	3 cut(s)	157, 292, 491
BmiI	GGNNCC	6 cut(s)	38, 158, 373, 450, 492, 609
BmrFI	CCNGG	5 cut(s)	33, 165, 316, 317, 567
BmsI	GCATC	1 cut(s)	861
BpiI	GAAGAC	3 cut(s)	188, 284, 341
BpuMI	CCSGG	2 cut(s)	316, 317
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	32, 152, 163, 315
BsaWI	WCCGGW	3 cut(s)	298, 368, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 500
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	3 cut(s)	33, 165, 567
BseDI	CCNNGG	4 cut(s)	32, 152, 163, 315
BseGI	GGATG	2 cut(s)	325, 333
BseLI	CCNNNNNNNGG	2 cut(s)	124, 500
BseMII	CTCAG	2 cut(s)	138, 613
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	2 cut(s)	545, 587
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	371
BshTI	ACCGGT	1 cut(s)	520
BsiEI	CGRYCG	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	5 cut(s)	96, 299, 316, 369, 521
BslFI	GGGAC	4 cut(s)	170, 203, 504, 554
BslI	CCNNNNNNNGG	2 cut(s)	124, 500
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	4 cut(s)	170, 203, 504, 554
BsmI	GAATGC	2 cut(s)	729, 754
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	448, 667
BspACI	CCGC	3 cut(s)	9, 354, 578
BspCNI	CTCAG	2 cut(s)	139, 612
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	6 cut(s)	38, 158, 373, 450, 492, 609
BspMAI	CTGCAG	1 cut(s)	689
BspPI	GGATC	2 cut(s)	443, 456
BspT107I	GGYRCC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	4 cut(s)	32, 152, 163, 315
BssMI	GATC	2 cut(s)	448, 667
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	33, 165, 567
Bst4CI	ACNGT	2 cut(s)	296, 872
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	7, 356, 360
BstDEI	CTNAG	2 cut(s)	147, 599
BstF5I	GGATG	2 cut(s)	325, 333
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	87, 518
BstKTI	GATC	2 cut(s)	451, 670
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	448, 667
BstMCI	CGRYCG	1 cut(s)	129
BstNI	CCWGG	3 cut(s)	33, 165, 567
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	5 cut(s)	31, 163, 314, 315, 565
BstSFI	CTRYAG	1 cut(s)	685
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	3 cut(s)	188, 284, 341
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	325, 333
Cac8I	GCNNGC	3 cut(s)	7, 356, 360
CaiI	CAGNNNCTG	1 cut(s)	693
CfoI	GCGC	2 cut(s)	87, 518
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	157, 292, 491
Cfr9I	CCCGGG	1 cut(s)	315
CseI	GACGC	1 cut(s)	346
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	4 cut(s)	73, 202, 271, 563
CspAI	ACCGGT	1 cut(s)	520
CviAII	CATG	3 cut(s)	395, 614, 820
CviQI	GTAC	4 cut(s)	73, 202, 271, 563
DdeI	CTNAG	2 cut(s)	147, 599
DpnI	GATC	2 cut(s)	450, 669
DpnII	GATC	2 cut(s)	448, 667
DraI	TTTAAA	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	157, 292, 491
Eco57I	CTGAAG	2 cut(s)	101, 200
Eco88I	CYCGRG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	3 cut(s)	19, 235, 435
EcoRII	CCWGG	3 cut(s)	31, 163, 565
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	398, 617, 823
FaqI	GGGAC	4 cut(s)	170, 203, 504, 554
FatI	CATG	3 cut(s)	394, 613, 819
FauI	CCCGC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	10, 579, 582
FokI	GGATG	2 cut(s)	332, 340
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	10, 579, 582
FspBI	CTAG	4 cut(s)	65, 186, 243, 880
GlaI	GCGC	2 cut(s)	86, 517
GluI	GCNGC	3 cut(s)	10, 579, 582
HapII	CCGG	5 cut(s)	96, 299, 316, 369, 521
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	2 cut(s)	87, 518
Hin1II	CATG	3 cut(s)	398, 617, 823
Hin6I	GCGC	2 cut(s)	85, 516
HinP1I	GCGC	2 cut(s)	85, 516
HincII	GTYRAC	2 cut(s)	133, 634
HindII	GTYRAC	2 cut(s)	133, 634
HinfI	GANTC	3 cut(s)	42, 111, 250
HpaII	CCGG	5 cut(s)	96, 299, 316, 369, 521
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	3 cut(s)	133, 563, 634
Hpy188I	TCNGA	4 cut(s)	41, 81, 110, 672
Hpy188III	TCNNGA	3 cut(s)	218, 475, 745
Hpy8I	GTNNAC	3 cut(s)	133, 563, 634
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	2 cut(s)	296, 872
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	5 cut(s)	394, 687, 729, 752, 828
HpyF3I	CTNAG	2 cut(s)	147, 599
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	3 cut(s)	398, 617, 823
HspAI	GCGC	2 cut(s)	85, 516
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	448, 667
LmnI	GCTCC	2 cut(s)	34, 607
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	1 cut(s)	861
MabI	ACCWGGT	1 cut(s)	565
MaeI	CTAG	4 cut(s)	65, 186, 243, 880
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	553, 770, 866
MalI	GATC	2 cut(s)	450, 669
MboI	GATC	2 cut(s)	448, 667
MboII	GAAGA	7 cut(s)	71, 193, 289, 343, 346, 490, 508
MfeI	CAATTG	2 cut(s)	382, 624
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	9 cut(s)	19, 235, 310, 382, 419, 435, 624, 718, 737
MnlI	CCTC	8 cut(s)	170, 376, 409, 523, 526, 565, 568, 796
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	3 cut(s)	303, 716, 735
MslI	CAYNNNNRTG	1 cut(s)	860
MspI	CCGG	5 cut(s)	96, 299, 316, 369, 521
MspR9I	CCNGG	5 cut(s)	33, 165, 316, 317, 567
MunI	CAATTG	2 cut(s)	382, 624
Mva1269I	GAATGC	2 cut(s)	729, 754
MvaI	CCWGG	3 cut(s)	33, 165, 567
MvnI	CGCG	1 cut(s)	9
NciI	CCSGG	2 cut(s)	316, 317
NdeII	GATC	2 cut(s)	448, 667
NlaIII	CATG	3 cut(s)	398, 617, 823
NlaIV	GGNNCC	6 cut(s)	38, 158, 373, 450, 492, 609
NmuCI	GTSAC	2 cut(s)	553, 770
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	617
PciI	ACATGT	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	2 cut(s)	245, 549
PctI	GAATGC	2 cut(s)	729, 754
PfeI	GAWTC	3 cut(s)	42, 111, 250
PinAI	ACCGGT	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	11, 580, 583
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	1 cut(s)	613
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	31, 163, 565
PspGI	CCWGG	3 cut(s)	31, 163, 565
PspN4I	GGNNCC	6 cut(s)	38, 158, 373, 450, 492, 609
PspPI	GGNCC	3 cut(s)	157, 292, 491
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	4 cut(s)	74, 203, 272, 564
RsaNI	GTAC	4 cut(s)	73, 202, 271, 563
RseI	CAYNNNNRTG	1 cut(s)	860
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	303, 716, 735
SatI	GCNGC	3 cut(s)	10, 579, 582
Sau3AI	GATC	2 cut(s)	448, 667
Sau96I	GGNCC	3 cut(s)	157, 292, 491
ScrFI	CCNGG	5 cut(s)	33, 165, 316, 317, 567
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	9 cut(s)	93, 162, 180, 433, 555, 568, 666, 695, 881
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	861
SfcI	CTRYAG	1 cut(s)	685
SinI	GGWCC	3 cut(s)	157, 292, 491
SmaI	CCCGGG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	860
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	9 cut(s)	19, 235, 310, 382, 419, 435, 624, 718, 737
SsiI	CCGC	3 cut(s)	9, 354, 578
SspMI	CTAG	4 cut(s)	65, 186, 243, 880
StyD4I	CCNGG	5 cut(s)	31, 163, 314, 315, 565
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	296, 872
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	3 cut(s)	114, 132, 173
TaqII	GACCGA	2 cut(s)	115, 508
TasI	AATT	9 cut(s)	19, 235, 310, 382, 419, 435, 624, 718, 737
TauI	GCSGC	2 cut(s)	12, 581
TfiI	GAWTC	3 cut(s)	42, 111, 250
Tru1I	TTAA	3 cut(s)	303, 716, 735
Tru9I	TTAA	3 cut(s)	303, 716, 735
TseFI	GTSAC	2 cut(s)	553, 770
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	2 cut(s)	553, 770
TspDTI	ATGAA	2 cut(s)	72, 344
TspGWI	ACGGA	1 cut(s)	441
TspMI	CCCGGG	1 cut(s)	315
VpaK11BI	GGWCC	3 cut(s)	157, 292, 491
XapI	RAATTY	5 cut(s)	19, 235, 435, 718, 737
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmaI	CCCGGG	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	4 cut(s)	65, 186, 243, 880
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.