Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Reverse (-)

29364888 .. 29366972

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1243600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTTCTTTAACTACCCAGAGCATCATGAGATGGTTGGAAATCCAGTAAAAAATGAATATATGACCTCACAAAGTCCTGAGGACCTAAAGTTTGTTGACTTGCCAGAGCACTATGAGGCTGATGCAAAATCAGTCAAAGATGAATGCTTTCTTGAACCAAGCGATGATGCAAATCCAGCTGTTGTCAATTACTCACTTAATGAACCGTATTTGAATGCTACGGAGAATACGCCAATTGGTGATGGGTTATTCCTTGAAGCTAATGATCTTTCAAATCCAGTCGAGTCAACTGCAGGTTTTGACATGCTTGATGAGTACCTTACATACTTTGATGCCAATGATGACATCTCTCAGTATATTGATTTCGATTCATGTGGAATGATGGGGGTTGAAAACTATGTTCCTGACGAAGCTCCAGCTGACCAGAAGCTTGTGAATGGTGAGACCGAGCCACAACCAATGGGAGGTGAACATGTACAACCAGAGCCACAGCCATTGGGAGGCGAACATCTTGTACAACCAGTGGATACTGATGATGCATCTGCATCTTCGTCAAAGAAAACGGCGGAGTTCAAGTTTGAGTCAGATGGTAACTACCCCTTCATCAAAAAGGCAAGTCACATGATGTTGGGCAGCATACCTGCTCCACCTGCATTTGCTTCGGAGTTCCCTGGTAAAGAGGCAATGCGTAGGTTAAATTCTGGTGCAGCATCTTCCAGTTCGGTTCATGTCACTGCTGCCATGATTAGAATTAGAGACATAACTTCAAGTGACAACAGGATGGACTGGTCTTTTGGAAAGGATGGGGTTGTCAACCTTGTCTTTTCTGTTCAGCTGTCACAGGATGACGGAAACTCTGGCAATCTGGTGCCAGTTGGTGGCTCACTCTCTGGAAAGACGGGATGTGTGGTGATGCGGGGCTGGTTTTTGTTTATGTTTTTCTGGGTCCTATTTCTTTCCATGAGTTTAAAAATCGGGAGCTATATCTGTACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

333

Amino Acids

36.49

Weight (kDa)

4.33

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	3 cut(s)	284, 649, 658
AccB1I	GGYRCC	1 cut(s)	868
AccB7I	CCANNNNNTGG	1 cut(s)	878
AciI	CCGC	2 cut(s)	566, 916
AcsI	RAATTY	1 cut(s)	697
AfaI	GTAC	4 cut(s)	317, 477, 516, 991
AfiI	CCNNNNNNNGG	3 cut(s)	464, 500, 878
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	7 cut(s)	155, 214, 257, 273, 392, 574, 768
AjnI	CCWGG	2 cut(s)	670, 992
AluBI	AGCT	7 cut(s)	179, 260, 413, 419, 430, 835, 981
AluI	AGCT	7 cut(s)	179, 260, 413, 419, 430, 835, 981
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	437, 750
ApeKI	GCWGC	3 cut(s)	633, 707, 737
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 776, 808
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	82, 946
AsuHPI	GGTGA	4 cut(s)	251, 452, 479, 922
AvaII	GGWCC	2 cut(s)	82, 946
AxyI	CCTNAGG	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	868
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	645, 719, 724
BccI	CCATC	6 cut(s)	25, 236, 376, 581, 775, 797
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	4 cut(s)	272, 306, 642, 676
BciT130I	CCWGG	2 cut(s)	672, 994
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	437, 750
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	3 cut(s)	284, 649, 658
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	3 cut(s)	634, 708, 738
BlsI	GCNGC	3 cut(s)	635, 709, 739
Bme1390I	CCNGG	2 cut(s)	672, 994
Bme18I	GGWCC	2 cut(s)	82, 946
BmgT120I	GGNCC	2 cut(s)	82, 946
BmiI	GGNNCC	2 cut(s)	870, 947
BmrFI	CCNGG	2 cut(s)	672, 994
BmsI	GCATC	9 cut(s)	31, 112, 157, 322, 526, 548, 554, 719, 903
BpmI	CTGGAG	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 500, 878
Bse1I	ACTGG	6 cut(s)	44, 278, 521, 717, 791, 872
Bse21I	CCTNAGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	672, 994
BseDI	CCNNGG	1 cut(s)	670
BseGI	GGATG	4 cut(s)	786, 808, 850, 908
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	464, 500, 878
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	69, 365
BseNI	ACTGG	6 cut(s)	44, 278, 521, 717, 791, 872
BseXI	GCAGC	3 cut(s)	645, 719, 724
BsgI	GTGCAG	1 cut(s)	726
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	464, 500, 878
BsmAI	GTCTC	2 cut(s)	437, 750
BsmI	GAATGC	2 cut(s)	149, 220
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	2 cut(s)	475, 514
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	566, 916
BspCNI	CTCAG	2 cut(s)	70, 364
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	870, 947
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	3 cut(s)	284, 649, 658
BspT107I	GGYRCC	1 cut(s)	868
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	690
BsrGI	TGTACA	2 cut(s)	475, 514
BsrI	ACTGG	6 cut(s)	44, 278, 521, 717, 791, 872
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	2 cut(s)	672, 994
Bst4CI	ACNGT	1 cut(s)	207
BstAUI	TGTACA	2 cut(s)	475, 514
BstDEI	CTNAG	2 cut(s)	78, 351
BstF5I	GGATG	4 cut(s)	786, 808, 850, 908
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	437, 750
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 650
BstNI	CCWGG	2 cut(s)	672, 994
BstNSI	RCATGY	2 cut(s)	307, 476
BstSCI	CCNGG	2 cut(s)	670, 992
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	645, 719, 724
Bsu36I	CCTNAGG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	4 cut(s)	786, 808, 850, 908
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	528, 732
BveI	ACCTGC	3 cut(s)	284, 649, 658
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	82, 946
CsiI	ACCWGGT	1 cut(s)	992
Csp6I	GTAC	4 cut(s)	316, 476, 515, 990
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviAII	CATG	8 cut(s)	26, 304, 372, 473, 622, 728, 742, 961
CviQI	GTAC	4 cut(s)	316, 476, 515, 990
DdeI	CTNAG	2 cut(s)	78, 351
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DraI	TTTAAA	1 cut(s)	969
EciI	GGCGGA	1 cut(s)	581
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	2 cut(s)	82, 946
Eco81I	CCTNAGG	1 cut(s)	78
EcoO109I	RGGNCCY	2 cut(s)	82, 946
EcoRII	CCWGG	2 cut(s)	670, 992
EcoT22I	ATGCAT	1 cut(s)	541
FaeI	CATG	8 cut(s)	29, 307, 375, 476, 625, 731, 745, 964
FatI	CATG	8 cut(s)	25, 303, 371, 472, 621, 727, 741, 960
FauI	CCCGC	1 cut(s)	909
Fnu4HI	GCNGC	3 cut(s)	634, 708, 738
FokI	GGATG	4 cut(s)	793, 815, 857, 915
Fsp4HI	GCNGC	3 cut(s)	634, 708, 738
GluI	GCNGC	3 cut(s)	634, 708, 738
GsuI	CTGGAG	1 cut(s)	399
Hin1II	CATG	8 cut(s)	29, 307, 375, 476, 625, 731, 745, 964
HincII	GTYRAC	3 cut(s)	97, 288, 814
HindII	GTYRAC	3 cut(s)	97, 288, 814
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	284, 368, 581
HphI	GGTGA	4 cut(s)	251, 452, 479, 922
Hpy166II	GTNNAC	4 cut(s)	97, 288, 470, 814
Hpy188I	TCNGA	2 cut(s)	586, 664
Hpy188III	TCNNGA	6 cut(s)	26, 77, 152, 404, 891, 976
Hpy8I	GTNNAC	4 cut(s)	97, 288, 470, 814
HpyAV	CCTTC	1 cut(s)	610
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	7 cut(s)	125, 170, 293, 539, 545, 653, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 650
HpyF3I	CTNAG	2 cut(s)	78, 351
Hsp92II	CATG	8 cut(s)	29, 307, 375, 476, 625, 731, 745, 964
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	3 cut(s)	418, 649, 978
Lsp1109I	GCAGC	3 cut(s)	645, 719, 724
LweI	GCATC	9 cut(s)	31, 112, 157, 322, 526, 548, 554, 719, 903
MabI	ACCWGGT	1 cut(s)	992
MaeIII	GTNAC	5 cut(s)	590, 617, 730, 770, 837
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	540, 705
MfeI	CAATTG	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	187, 234, 697, 750
MlyI	GAGTC	2 cut(s)	293, 590
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	73, 76, 109, 458, 494, 673
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	4 cut(s)	9, 198, 695, 968
MspA1I	CMGCKG	3 cut(s)	179, 419, 835
MspR9I	CCNGG	2 cut(s)	672, 994
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	2 cut(s)	149, 220
MvaI	CCWGG	2 cut(s)	672, 994
MwoI	GCNNNNNNNGC	2 cut(s)	176, 650
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	8 cut(s)	29, 307, 375, 476, 625, 731, 745, 964
NlaIV	GGNNCC	2 cut(s)	870, 947
NmuCI	GTSAC	4 cut(s)	617, 730, 770, 837
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	2 cut(s)	307, 476
PagI	TCATGA	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	658
PciI	ACATGT	1 cut(s)	472
PctI	GAATGC	2 cut(s)	149, 220
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	878
PkrI	GCNGC	3 cut(s)	635, 709, 739
PleI	GAGTC	2 cut(s)	292, 589
PpsI	GAGTC	2 cut(s)	292, 589
PpuMI	RGGWCCY	2 cut(s)	82, 946
PscI	ACATGT	1 cut(s)	472
Psp5II	RGGWCCY	2 cut(s)	82, 946
Psp6I	CCWGG	2 cut(s)	670, 992
PspGI	CCWGG	2 cut(s)	670, 992
PspN4I	GGNNCC	2 cut(s)	870, 947
PspPI	GGNCC	2 cut(s)	82, 946
PspPPI	RGGWCCY	2 cut(s)	82, 946
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PstI	CTGCAG	1 cut(s)	295
PvuII	CAGCTG	3 cut(s)	179, 419, 835
RsaI	GTAC	4 cut(s)	317, 477, 516, 991
RsaNI	GTAC	4 cut(s)	316, 476, 515, 990
SaqAI	TTAA	4 cut(s)	9, 198, 695, 968
SatI	GCNGC	3 cut(s)	634, 708, 738
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	82, 946
SchI	GAGTC	2 cut(s)	293, 590
ScrFI	CCNGG	2 cut(s)	672, 994
SduI	GDGCHC	1 cut(s)	111
SexAI	ACCWGGT	1 cut(s)	992
SfaNI	GCATC	9 cut(s)	31, 112, 157, 322, 526, 548, 554, 719, 903
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	82, 946
Sse9I	AATT	4 cut(s)	187, 234, 697, 750
SsiI	CCGC	2 cut(s)	566, 916
StyD4I	CCNGG	2 cut(s)	670, 992
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	282, 366
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	4 cut(s)	187, 234, 697, 750
TatI	WGTACW	2 cut(s)	475, 514
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	4 cut(s)	9, 198, 695, 968
Tru9I	TTAA	4 cut(s)	9, 198, 695, 968
TscAI	CASTG	2 cut(s)	528, 739
TseFI	GTSAC	4 cut(s)	617, 730, 770, 837
TseI	GCWGC	3 cut(s)	633, 707, 737
Tsp45I	GTSAC	4 cut(s)	617, 730, 770, 837
TspDTI	ATGAA	6 cut(s)	69, 156, 216, 360, 592, 716
TspGWI	ACGGA	2 cut(s)	236, 864
TspRI	CASTG	2 cut(s)	528, 739
Van91I	CCANNNNNTGG	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	82, 946
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	2 cut(s)	307, 476
XmnI	GAANNNNTTC	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.