Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

30613214 .. 30617829

Gene Structure 4616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG145700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGGCCGTCAGTCTTCGCAATCGCTCGCTCCCGGGTTCCGATTCCACCCCACCGATGAAGAACTTGTCTGGTACTACCTGAAGCGCAAGGTCGCCGGAAAATCTTTCCGCTTCGACGCCATCTCCGTCGTCGATATCTACAAGATCGAGCCTTGGGACCTCCCTGGGAAGTCGAAGCTGAAAAGCAGGGACACGGAGTGGTACTTCTTCAGTCTTCTGGACAAGAAGTATGGAAATTCGTCGAGGACGAATCGGGCTACCGAAAAAGGGTACTGGAAGACTACTGGGAAGGATCGCCCCGTTTGCCATAATTCCAGGGCGGTGGGGATGAAGAAGACCCTTGTTTTCCACAGTGGCCGGGCCCCCAAAGGTGCCAGGACCAATTGGGTTATGCATGAGTACCGCCTCGATAACCAGGAATTGGAGAAAGCTGGAATAATAGAGAAAGATGCATATGTGCTCTGTAGGATATTCCAGAAGAGTGGTACTGGGCCCAAGAATGGGGAGCAGTATGGTGCTCCATTTATTGAGGAGGAATGGGATGAAGAAGATGAGGTTTATGGACTTGGTGAAGAGGCTATTGCTAATGAAGTAGCAGTCAGCGGTGGGCCGTATACTGAAGCAAATGAGCTCAGCGATGGGGGATATGTTGAGGCAATTGACCTTGATCAGATTGACACAGGTGTTCCTGAAAGTGGTCCTCGTCCATTGAACTTCTATCATGGGGAGACAAGCAACTATATTGAGCAATCTGGGGACTTAGTTGAAGATGCTGCAAAGACTGCAGTAGGCGCTGGGGAAACTCTGGAATATTGCGAAGAGCAAAAGTACTTTGACTTACCAGAGCAGTATGAGATGGAAGCAAAGCCTGTCAAAGTTGAATACTTAACTTCGGACTACCATGACAACCAGAATTTCTTCAACTTACCGGAGTATTATGAGACAGAAACAAAAGAGGTCAAAGATGAATATGTTGAACCAAGCCATAATATGAATCCTGTGGATGTTAGCTACTCACTCAATGATCCATATTTAAATGCTACTGAAAACCCGCCATTCGGTGACGGGCAATTCTTAGAAACTAATGATCTTTCAATTCCAGCCAATCCAGTTGAGCCAAATTCTGCAGGCTTTGATATGCTTGATGAGTACCTTACATACTTTGATGCGGATGATGACATCTCTCAGTACATTGATTTTGATTCTTGTGGAATGCTGGGGAATGAAAATACTGTTCCTAGTGAACCTCGGGTTGAGCAGTCTGTTATGGGTGAAACTCAGCCGCTATCCACAGGAAGCCAACATCTTGTAGAGGCACATGATGTCAATGATGCATCTTCATCAAAACAAAAGCCGGACATGAAATTTGTATCAGATGGCAAGTTTCCATTCATCACAAAGGCGAGTCACATGTTGGGCAGTATACCTGCTCCTCCTGCATTTGCTTCAGAGTTCCCTCCTAAAGATGCAATCCGTCGGTTGAATTCGGAAGTAGCATCCTCAAGTTCAGTTCATGCTGGCATGATCAGAATAAGAGACATAACTTCAAGCGACAACAGGGTGGAGTGGTCTATTGGTAAGGATGGGGTTGTCAACCTTGTGTTTTCTGTTCAGCTGCCGCAAAGTGATGTCACTTCTTCCAACCTGGTACCAATGGGTGGCTCAGTCTCTGGCAAGACAGGATCTGTGGTCATGCGGGGCTGGTTTTTGTTCATGTTCTTCTGGGTCCTATTTATTTCCATCAGTTTCAAAATCGGGAGCTATATATATGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

592

Amino Acids

66.38

Weight (kDa)

4.68

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 136	1.4e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1435
Acc65I	GGTACC	1 cut(s)	1648
AccB1I	GGYRCC	2 cut(s)	371, 1648
AccB7I	CCANNNNNTGG	2 cut(s)	421, 1658
AccI	GTMKAC	2 cut(s)	614, 1423
AciI	CCGC	9 cut(s)	109, 320, 403, 603, 1052, 1169, 1283, 1619, 1696
AclWI	GGATC	3 cut(s)	300, 1019, 1690
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	5 cut(s)	235, 913, 1120, 1364, 1483
AcuI	CTGAAG	4 cut(s)	101, 193, 639, 1431
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	198
AfaI	GTAC	9 cut(s)	74, 203, 272, 401, 487, 830, 1151, 1190, 1650
AfiI	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 695, 1058, 1658
AflIII	ACRYGT	1 cut(s)	1410
AgsI	TTSAA	9 cut(s)	712, 767, 881, 922, 977, 1095, 1483, 1548, 1750
AjnI	CCWGG	5 cut(s)	163, 314, 374, 414, 1644
AluBI	AGCT	6 cut(s)	178, 431, 631, 1011, 1615, 1761
AluI	AGCT	6 cut(s)	178, 431, 631, 1011, 1615, 1761
Alw21I	GWGCWC	3 cut(s)	462, 520, 633
Alw26I	GTCTC	4 cut(s)	722, 935, 1530, 1672
AlwI	GGATC	3 cut(s)	300, 1019, 1690
AlwNI	CAGNNNCTG	2 cut(s)	1670, 1685
Ama87I	CYCGRG	2 cut(s)	32, 1248
AoxI	GGCC	5 cut(s)	4, 355, 360, 491, 608
ApaI	GGGCCC	2 cut(s)	364, 495
ApeKI	GCWGC	2 cut(s)	773, 1615
ApoI	RAATTY	5 cut(s)	235, 913, 1120, 1364, 1483
ArsI	GACNNNNNNTTYG	2 cut(s)	1349, 1381
Asp700I	GAANNNNTTC	1 cut(s)	917
Asp718I	GGTACC	1 cut(s)	1648
AspLEI	GCGC	2 cut(s)	87, 794
AsuC2I	CCSGG	3 cut(s)	33, 34, 359
AsuHPI	GGTGA	3 cut(s)	581, 1073, 1283
AvaI	CYCGRG	2 cut(s)	32, 1248
AvaII	GGWCC	4 cut(s)	157, 378, 698, 1726
BaeGI	GKGCMC	2 cut(s)	364, 495
BanI	GGYRCC	2 cut(s)	371, 1648
BanII	GRGCYC	3 cut(s)	364, 495, 633
BbsI	GAAGAC	4 cut(s)	6, 206, 284, 341
Bbv12I	GWGCWC	3 cut(s)	462, 520, 633
BbvI	GCAGC	2 cut(s)	760, 1602
BccI	CCATC	6 cut(s)	128, 632, 850, 1370, 1577, 1748
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	5 cut(s)	165, 316, 376, 416, 1646
BclI	TGATCA	2 cut(s)	667, 1524
BcnI	CCSGG	3 cut(s)	33, 34, 359
BcoDI	GTCTC	4 cut(s)	722, 935, 1530, 1672
BfaI	CTAG	1 cut(s)	1239
BfmI	CTRYAG	3 cut(s)	463, 783, 1125
BfoI	RGCGCY	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	1435
BisI	GCNGC	4 cut(s)	774, 1283, 1616, 1619
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	4 cut(s)	775, 1284, 1617, 1620
BmcAI	AGTACT	1 cut(s)	830
Bme1390I	CCNGG	8 cut(s)	33, 34, 165, 316, 359, 376, 416, 1646
Bme18I	GGWCC	4 cut(s)	157, 378, 698, 1726
BmeT110I	CYCGRG	2 cut(s)	32, 1248
BmiI	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1650, 1727
BmrFI	CCNGG	8 cut(s)	33, 34, 165, 316, 359, 376, 416, 1646
BmrI	ACTGGG	2 cut(s)	294, 498
BmsI	GCATC	7 cut(s)	439, 760, 1156, 1321, 1343, 1456, 1505
BmuI	ACTGGG	2 cut(s)	294, 498
BpiI	GAAGAC	4 cut(s)	6, 206, 284, 341
Bpu1102I	GCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	1486
BpuMI	CCSGG	3 cut(s)	33, 34, 359
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	6 cut(s)	32, 152, 163, 164, 315, 1247
BsaWI	WCCGGW	1 cut(s)	928
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 695, 1058, 1658
Bse1I	ACTGG	4 cut(s)	278, 289, 493, 1109
BseBI	CCWGG	5 cut(s)	165, 316, 376, 416, 1646
BseDI	CCNNGG	6 cut(s)	32, 152, 163, 164, 315, 1247
BseGI	GGATG	6 cut(s)	333, 547, 1009, 1177, 1496, 1588
BseLI	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 695, 1058, 1658
BseMII	CTCAG	4 cut(s)	646, 1199, 1292, 1677
BseNI	ACTGG	4 cut(s)	278, 289, 493, 1109
BseRI	GAGGAG	2 cut(s)	545, 1422
BseSI	GKGCMC	2 cut(s)	364, 495
BseXI	GCAGC	2 cut(s)	760, 1602
BseYI	CCCAGC	2 cut(s)	794, 1216
BshFI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BshNI	GGYRCC	2 cut(s)	371, 1648
BsiHKAI	GWGCWC	3 cut(s)	462, 520, 633
BsiHKCI	CYCGRG	2 cut(s)	32, 1248
BsiSI	CCGG	5 cut(s)	33, 96, 358, 929, 1355
BslFI	GGGAC	3 cut(s)	170, 203, 770
BslI	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 695, 1058, 1658
BsmAI	GTCTC	4 cut(s)	722, 935, 1530, 1672
BsmFI	GGGAC	3 cut(s)	170, 203, 770
BsmI	GAATGC	1 cut(s)	1218
BsnI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BsoBI	CYCGRG	2 cut(s)	32, 1248
Bsp120I	GGGCCC	2 cut(s)	360, 491
Bsp1286I	GDGCHC	5 cut(s)	364, 462, 495, 520, 633
Bsp143I	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
Bsp1720I	GCTNAGC	1 cut(s)	632
BspACI	CCGC	9 cut(s)	109, 320, 403, 603, 1052, 1169, 1283, 1619, 1696
BspANI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BspCNI	CTCAG	4 cut(s)	645, 1198, 1291, 1676
BspLI	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1650, 1727
BspMAI	CTGCAG	2 cut(s)	787, 1129
BspMI	ACCTGC	1 cut(s)	1435
BspPI	GGATC	3 cut(s)	300, 1019, 1690
BspQI	GCTCTTC	1 cut(s)	813
BspT107I	GGYRCC	2 cut(s)	371, 1648
BsrI	ACTGG	4 cut(s)	278, 289, 493, 1109
BssECI	CCNNGG	6 cut(s)	32, 152, 163, 164, 315, 1247
BssMI	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
BssNAI	GTATAC	2 cut(s)	615, 1424
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	152
Bst1107I	GTATAC	2 cut(s)	615, 1424
Bst2UI	CCWGG	5 cut(s)	165, 316, 376, 416, 1646
Bst4CI	ACNGT	2 cut(s)	353, 1234
Bst6I	CTCTTC	3 cut(s)	473, 567, 813
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	27, 1129, 1519
BstDEI	CTNAG	6 cut(s)	632, 760, 1075, 1185, 1278, 1663
BstF5I	GGATG	6 cut(s)	333, 547, 1009, 1177, 1496, 1588
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	2 cut(s)	87, 794
BstKTI	GATC	7 cut(s)	147, 295, 670, 1027, 1090, 1527, 1685
BstMAI	GTCTC	4 cut(s)	722, 935, 1530, 1672
BstMBI	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 782, 791, 1436
BstNI	CCWGG	5 cut(s)	165, 316, 376, 416, 1646
BstNSI	RCATGY	1 cut(s)	1414
BstSCI	CCNGG	8 cut(s)	31, 32, 163, 314, 357, 374, 414, 1644
BstSFI	CTRYAG	3 cut(s)	463, 783, 1125
BstSLI	GKGCMC	2 cut(s)	364, 495
BstV1I	GCAGC	2 cut(s)	760, 1602
BstV2I	GAAGAC	4 cut(s)	6, 206, 284, 341
BstX2I	RGATCY	1 cut(s)	1682
BstXI	CCANNNNNNTGG	2 cut(s)	322, 482
BstYI	RGATCY	1 cut(s)	1682
BstZ17I	GTATAC	2 cut(s)	615, 1424
BsuRI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	6 cut(s)	333, 547, 1009, 1177, 1496, 1588
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	1435
Cac8I	GCNNGC	3 cut(s)	27, 1129, 1519
CaiI	CAGNNNCTG	2 cut(s)	1670, 1685
CfoI	GCGC	2 cut(s)	87, 794
Cfr9I	CCCGGG	1 cut(s)	32
CseI	GACGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	1644
Csp6I	GTAC	9 cut(s)	73, 202, 271, 400, 486, 829, 1150, 1189, 1649
CviQI	GTAC	9 cut(s)	73, 202, 271, 400, 486, 829, 1150, 1189, 1649
DdeI	CTNAG	6 cut(s)	632, 760, 1075, 1185, 1278, 1663
DpnI	GATC	7 cut(s)	146, 294, 669, 1026, 1089, 1526, 1684
DpnII	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
DraI	TTTAAA	1 cut(s)	1035
DraIII	CACNNNGTG	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	3 cut(s)	473, 567, 813
EarI	CTCTTC	3 cut(s)	473, 567, 813
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	3 cut(s)	364, 495, 633
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	4 cut(s)	157, 378, 698, 1726
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	4 cut(s)	101, 193, 639, 1431
Eco88I	CYCGRG	2 cut(s)	32, 1248
EcoICRI	GAGCTC	1 cut(s)	631
EcoO109I	RGGNCCY	3 cut(s)	157, 361, 1726
EcoRI	GAATTC	1 cut(s)	1483
EcoRII	CCWGG	5 cut(s)	163, 314, 374, 414, 1644
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	3 cut(s)	396, 454, 1336
EcoT38I	GRGCYC	3 cut(s)	364, 495, 633
ErhI	CCWWGG	1 cut(s)	152
FaqI	GGGAC	3 cut(s)	170, 203, 770
FauI	CCCGC	2 cut(s)	1059, 1689
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	2 cut(s)	667, 1524
FblI	GTMKAC	2 cut(s)	614, 1423
Fnu4HI	GCNGC	4 cut(s)	774, 1283, 1616, 1619
FokI	GGATG	6 cut(s)	340, 554, 1016, 1184, 1483, 1595
FriOI	GRGCYC	3 cut(s)	364, 495, 633
Fsp4HI	GCNGC	4 cut(s)	774, 1283, 1616, 1619
FspBI	CTAG	1 cut(s)	1239
GlaI	GCGC	2 cut(s)	86, 793
GluI	GCNGC	4 cut(s)	774, 1283, 1616, 1619
GsaI	CCCAGC	2 cut(s)	798, 1220
HaeII	RGCGCY	1 cut(s)	795
HaeIII	GGCC	5 cut(s)	6, 357, 362, 493, 610
HapII	CCGG	5 cut(s)	33, 96, 358, 929, 1355
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	87, 794
Hin1I	GRCGYC	1 cut(s)	117
Hin6I	GCGC	2 cut(s)	85, 792
HinP1I	GCGC	2 cut(s)	85, 792
HincII	GTYRAC	1 cut(s)	1594
HindII	GTYRAC	1 cut(s)	1594
HinfI	GANTC	5 cut(s)	42, 250, 994, 1202, 1405
HpaII	CCGG	5 cut(s)	33, 96, 358, 929, 1355
HphI	GGTGA	3 cut(s)	581, 1073, 1283
Hpy166II	GTNNAC	4 cut(s)	615, 1244, 1424, 1594
Hpy188I	TCNGA	7 cut(s)	41, 672, 895, 1375, 1450, 1489, 1529
Hpy188III	TCNNGA	5 cut(s)	218, 475, 689, 806, 1756
Hpy8I	GTNNAC	4 cut(s)	615, 1244, 1424, 1594
Hpy99I	CGWCG	5 cut(s)	119, 131, 134, 244, 1479
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	2 cut(s)	353, 1234
HpyCH4V	TGCA	8 cut(s)	394, 452, 776, 785, 1127, 1334, 1439, 1469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 782, 791, 1436
HpyF3I	CTNAG	6 cut(s)	632, 760, 1075, 1185, 1278, 1663
Hsp92I	GRCGYC	1 cut(s)	117
HspAI	GCGC	2 cut(s)	85, 792
KpnI	GGTACC	1 cut(s)	1652
Ksp22I	TGATCA	2 cut(s)	667, 1524
Kzo9I	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	5 cut(s)	34, 505, 523, 1435, 1758
Lsp1109I	GCAGC	2 cut(s)	760, 1602
LweI	GCATC	7 cut(s)	439, 760, 1156, 1321, 1343, 1456, 1505
MabI	ACCWGGT	1 cut(s)	1644
MaeI	CTAG	1 cut(s)	1239
MaeIII	GTNAC	3 cut(s)	1061, 1406, 1630
MalI	GATC	7 cut(s)	146, 294, 669, 1026, 1089, 1526, 1684
MboI	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
MfeI	CAATTG	2 cut(s)	382, 657
MflI	RGATCY	1 cut(s)	1682
MhlI	GDGCHC	5 cut(s)	364, 462, 495, 520, 633
MlyI	GAGTC	1 cut(s)	1414
MmeI	TCCRAC	1 cut(s)	1665
Mph1103I	ATGCAT	3 cut(s)	396, 454, 1336
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	2 cut(s)	887, 1034
MspA1I	CMGCKG	2 cut(s)	603, 1615
MspI	CCGG	5 cut(s)	33, 96, 358, 929, 1355
MspR9I	CCNGG	8 cut(s)	33, 34, 165, 316, 359, 376, 416, 1646
MunI	CAATTG	2 cut(s)	382, 657
Mva1269I	GAATGC	1 cut(s)	1218
MvaI	CCWGG	5 cut(s)	165, 316, 376, 416, 1646
MwoI	GCNNNNNNNGC	4 cut(s)	303, 782, 791, 1436
NciI	CCSGG	3 cut(s)	33, 34, 359
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
NlaIV	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1650, 1727
NmuCI	GTSAC	3 cut(s)	1061, 1406, 1630
NsiI	ATGCAT	3 cut(s)	396, 454, 1336
NspI	RCATGY	1 cut(s)	1414
PasI	CCCWGGG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	1410
PciSI	GCTCTTC	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 245
PctI	GAATGC	1 cut(s)	1218
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	4 cut(s)	42, 250, 994, 1202
PflMI	CCANNNNNTGG	2 cut(s)	421, 1658
PkrI	GCNGC	4 cut(s)	775, 1284, 1617, 1620
PleI	GAGTC	1 cut(s)	1413
PpsI	GAGTC	1 cut(s)	1413
PpuMI	RGGWCCY	2 cut(s)	157, 1726
PscI	ACATGT	1 cut(s)	1410
Psp124BI	GAGCTC	1 cut(s)	633
Psp5II	RGGWCCY	2 cut(s)	157, 1726
Psp6I	CCWGG	5 cut(s)	163, 314, 374, 414, 1644
PspFI	CCCAGC	2 cut(s)	794, 1216
PspGI	CCWGG	5 cut(s)	163, 314, 374, 414, 1644
PspN4I	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1650, 1727
PspOMI	GGGCCC	2 cut(s)	360, 491
PspPPI	RGGWCCY	2 cut(s)	157, 1726
PstI	CTGCAG	2 cut(s)	787, 1129
PstNI	CAGNNNCTG	2 cut(s)	1670, 1685
PsuI	RGATCY	1 cut(s)	1682
PvuII	CAGCTG	1 cut(s)	1615
RsaI	GTAC	9 cut(s)	74, 203, 272, 401, 487, 830, 1151, 1190, 1650
RsaNI	GTAC	9 cut(s)	73, 202, 271, 400, 486, 829, 1150, 1189, 1649
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	887, 1034
SatI	GCNGC	4 cut(s)	774, 1283, 1616, 1619
Sau3AI	GATC	7 cut(s)	144, 292, 667, 1024, 1087, 1524, 1682
ScaI	AGTACT	1 cut(s)	830
SchI	GAGTC	1 cut(s)	1414
ScrFI	CCNGG	8 cut(s)	33, 34, 165, 316, 359, 376, 416, 1646
SduI	GDGCHC	5 cut(s)	364, 462, 495, 520, 633
SexAI	ACCWGGT	1 cut(s)	1644
SfaNI	GCATC	7 cut(s)	439, 760, 1156, 1321, 1343, 1456, 1505
SfcI	CTRYAG	3 cut(s)	463, 783, 1125
SinI	GGWCC	4 cut(s)	157, 378, 698, 1726
SmaI	CCCGGG	1 cut(s)	34
SmiI	ATTTAAAT	1 cut(s)	1035
SmlI	CTYRAG	1 cut(s)	1501
SmoI	CTYRAG	1 cut(s)	1501
SsiI	CCGC	9 cut(s)	109, 320, 403, 603, 1052, 1169, 1283, 1619, 1696
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	1 cut(s)	1239
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	8 cut(s)	31, 32, 163, 314, 357, 374, 414, 1644
StyI	CCWWGG	1 cut(s)	152
SwaI	ATTTAAAT	1 cut(s)	1035
TaaI	ACNGT	2 cut(s)	353, 1234
TaqI	TCGA	6 cut(s)	114, 132, 147, 173, 242, 408
TatI	WGTACW	2 cut(s)	828, 1188
TauI	GCSGC	2 cut(s)	1285, 1621
TfiI	GAWTC	4 cut(s)	42, 250, 994, 1202
Tru1I	TTAA	2 cut(s)	887, 1034
Tru9I	TTAA	2 cut(s)	887, 1034
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	3 cut(s)	1061, 1406, 1630
TseI	GCWGC	2 cut(s)	773, 1615
Tsp45I	GTSAC	3 cut(s)	1061, 1406, 1630
TspGWI	ACGGA	3 cut(s)	115, 209, 1463
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	2 cut(s)	421, 1658
VpaK11BI	GGWCC	4 cut(s)	157, 378, 698, 1726
XapI	RAATTY	5 cut(s)	235, 913, 1120, 1364, 1483
XceI	RCATGY	1 cut(s)	1414
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	2 cut(s)	614, 1423
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	1 cut(s)	1239
ZrmI	AGTACT	1 cut(s)	830
Zsp2I	ATGCAT	3 cut(s)	396, 454, 1336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.