Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457141.1

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1724

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1049 bp

atgattttttttccccagattgacacaggtgttcctgaaagtggtcctcgtccattgaacttctatcatggggagacaagcaactatattgagcaatctggggacttagttgaagatgctgcaaagactgcagtaggcgctggggaaactctggaatattgcgaagagcagaagtactttgacttaccagagcagtatgagatggaagcaaagcctgtcaaagttgaatacttaacttcggactaccatgacaaccagaatttcttcaacttaccagagtattatgagacagaaacaaaagaggtcaaagatgaatatgttgaaccaagccataatatgaatcctgtggatgttagctactcactcaatgatccatatttaaatgctactgaaaacccgccattcggtgacgggcaattcttagaaactaatgatctttcaattccagccaatccagttgagccaaattctgcaggctttgatatgcttgatgagtaccttacatactttgatgcggatgatgacatctctcagtacattgattttgattcttgtggaatgctggggaatgaaaatactgttcctagtgaacctctggttgagcagtctgttatgggtgaaactcagccactatccacaggaagccaacatcttgtagaggcacatgatgtcaatgatgcatcttcatcaaaacaaaagccggacatgaaatttgtatcagatggcaagtttccattcatcacaaaggcgagtcacatgttgggcagtatacctgctcctcctgcatttgcttcagagttccctcctaaggatgcaatccgtcggttgaattcggaagtagcatcctcaagttcagttcatgctggcatgatcagaataagagacataacttcaagcgacaacagggtggagtggtctattggtaaggatggggttgtcaaccttgtgttttctgttcagctgccgcaaagtgatgtcacttcttccaacctggtaccaatgggtggctctgtctctggcaagacgggatctgtggtcatgcggggctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

349

Amino Acids

38.47

Weight (kDa)

4.23

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	781
Acc65I	GGTACC	1 cut(s)	994
AccB1I	GGYRCC	1 cut(s)	994
AccB7I	CCANNNNNTGG	1 cut(s)	1004
AccI	GTMKAC	1 cut(s)	769
AciI	CCGC	4 cut(s)	398, 515, 965, 1042
AclWI	GGATC	2 cut(s)	365, 1036
AcsI	RAATTY	4 cut(s)	259, 466, 710, 829
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	4 cut(s)	176, 497, 536, 996
AfiI	CCNNNNNNNGG	4 cut(s)	41, 404, 808, 1004
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	8 cut(s)	58, 113, 227, 268, 323, 441, 829, 894
AjnI	CCWGG	1 cut(s)	990
AluBI	AGCT	2 cut(s)	357, 961
AluI	AGCT	2 cut(s)	357, 961
Alw26I	GTCTC	4 cut(s)	68, 281, 876, 1018
AlwI	GGATC	2 cut(s)	365, 1036
ApeKI	GCWGC	2 cut(s)	119, 961
ApoI	RAATTY	4 cut(s)	259, 466, 710, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
Asp700I	GAANNNNTTC	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	994
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	419, 629
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	994
BbvI	GCAGC	2 cut(s)	106, 948
BccI	CCATC	3 cut(s)	196, 716, 923
BciT130I	CCWGG	1 cut(s)	992
BclI	TGATCA	1 cut(s)	870
BcoDI	GTCTC	4 cut(s)	68, 281, 876, 1018
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	2 cut(s)	129, 471
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	781
BisI	GCNGC	3 cut(s)	120, 962, 965
BlsI	GCNGC	3 cut(s)	121, 963, 966
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	992
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	996
BmrFI	CCNGG	1 cut(s)	992
BmsI	GCATC	6 cut(s)	106, 502, 667, 689, 802, 851
BpuEI	CTTGAG	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 404, 808, 1004
Bse1I	ACTGG	1 cut(s)	455
Bse21I	CCTNAGG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	992
BseGI	GGATG	5 cut(s)	355, 523, 817, 842, 934
BseLI	CCNNNNNNNGG	4 cut(s)	41, 404, 808, 1004
BseMII	CTCAG	2 cut(s)	545, 638
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	2 cut(s)	106, 948
BseYI	CCCAGC	2 cut(s)	140, 562
BshNI	GGYRCC	1 cut(s)	994
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	41, 404, 808, 1004
BsmAI	GTCTC	4 cut(s)	68, 281, 876, 1018
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	370, 433, 870, 1028
BspACI	CCGC	4 cut(s)	398, 515, 965, 1042
BspCNI	CTCAG	2 cut(s)	544, 637
BspLI	GGNNCC	1 cut(s)	996
BspMAI	CTGCAG	2 cut(s)	133, 475
BspMI	ACCTGC	1 cut(s)	781
BspPI	GGATC	2 cut(s)	365, 1036
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	994
BsrI	ACTGG	1 cut(s)	455
BssMI	GATC	4 cut(s)	370, 433, 870, 1028
BssNAI	GTATAC	1 cut(s)	770
Bst1107I	GTATAC	1 cut(s)	770
Bst2UI	CCWGG	1 cut(s)	992
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	475, 865
BstDEI	CTNAG	5 cut(s)	106, 421, 531, 624, 807
BstF5I	GGATG	5 cut(s)	355, 523, 817, 842, 934
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	373, 436, 873, 1031
BstMAI	GTCTC	4 cut(s)	68, 281, 876, 1018
BstMBI	GATC	4 cut(s)	370, 433, 870, 1028
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 782
BstNI	CCWGG	1 cut(s)	992
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	1 cut(s)	990
BstSFI	CTRYAG	2 cut(s)	129, 471
BstV1I	GCAGC	2 cut(s)	106, 948
BstX2I	RGATCY	1 cut(s)	1028
BstYI	RGATCY	1 cut(s)	1028
BstZ17I	GTATAC	1 cut(s)	770
Bsu36I	CCTNAGG	1 cut(s)	807
BtsCI	GGATG	5 cut(s)	355, 523, 817, 842, 934
BveI	ACCTGC	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	475, 865
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	990
Csp6I	GTAC	4 cut(s)	175, 496, 535, 995
CviAII	CATG	8 cut(s)	68, 248, 665, 706, 757, 860, 868, 1039
CviQI	GTAC	4 cut(s)	175, 496, 535, 995
DdeI	CTNAG	5 cut(s)	106, 421, 531, 624, 807
DpnI	GATC	4 cut(s)	372, 435, 872, 1030
DpnII	GATC	4 cut(s)	370, 433, 870, 1028
DraI	TTTAAA	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	777
Eco81I	CCTNAGG	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	990
EcoT22I	ATGCAT	1 cut(s)	682
FaeI	CATG	8 cut(s)	71, 251, 668, 709, 760, 863, 871, 1042
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	8 cut(s)	67, 247, 664, 705, 756, 859, 867, 1038
FauI	CCCGC	2 cut(s)	405, 1035
FbaI	TGATCA	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	3 cut(s)	120, 962, 965
FokI	GGATG	5 cut(s)	362, 530, 824, 829, 941
Fsp4HI	GCNGC	3 cut(s)	120, 962, 965
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	120, 962, 965
GsaI	CCCAGC	2 cut(s)	144, 566
HaeII	RGCGCY	1 cut(s)	141
HapII	CCGG	1 cut(s)	701
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	8 cut(s)	71, 251, 668, 709, 760, 863, 871, 1042
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HinfI	GANTC	3 cut(s)	340, 548, 751
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	2 cut(s)	419, 629
Hpy166II	GTNNAC	3 cut(s)	590, 770, 940
Hpy188I	TCNGA	5 cut(s)	241, 721, 796, 835, 875
Hpy188III	TCNNGA	2 cut(s)	35, 152
Hpy8I	GTNNAC	3 cut(s)	590, 770, 940
Hpy99I	CGWCG	1 cut(s)	825
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	6 cut(s)	122, 131, 473, 680, 785, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 782
HpyF3I	CTNAG	5 cut(s)	106, 421, 531, 624, 807
Hsp92II	CATG	8 cut(s)	71, 251, 668, 709, 760, 863, 871, 1042
HspAI	GCGC	1 cut(s)	138
KpnI	GGTACC	1 cut(s)	998
Ksp22I	TGATCA	1 cut(s)	870
Kzo9I	GATC	4 cut(s)	370, 433, 870, 1028
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	2 cut(s)	106, 948
LweI	GCATC	6 cut(s)	106, 502, 667, 689, 802, 851
MabI	ACCWGGT	1 cut(s)	990
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	407, 752, 976
MalI	GATC	4 cut(s)	372, 435, 872, 1030
MboI	GATC	4 cut(s)	370, 433, 870, 1028
MboII	GAAGA	5 cut(s)	125, 176, 256, 675, 975
MflI	RGATCY	1 cut(s)	1028
MluCI	AATT	6 cut(s)	259, 416, 441, 466, 710, 829
MlyI	GAGTC	1 cut(s)	760
MmeI	TCCRAC	1 cut(s)	1011
MnlI	CCTC	7 cut(s)	57, 295, 603, 652, 789, 813, 856
Mph1103I	ATGCAT	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	233, 380
MspA1I	CMGCKG	1 cut(s)	961
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	992
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	992
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 782
NdeII	GATC	4 cut(s)	370, 433, 870, 1028
NlaIII	CATG	8 cut(s)	71, 251, 668, 709, 760, 863, 871, 1042
NlaIV	GGNNCC	1 cut(s)	996
NmuCI	GTSAC	3 cut(s)	407, 752, 976
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	760
PciI	ACATGT	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	340, 548
PflMI	CCANNNNNTGG	1 cut(s)	1004
PkrI	GCNGC	3 cut(s)	121, 963, 966
PleI	GAGTC	1 cut(s)	759
PpsI	GAGTC	1 cut(s)	759
PscI	ACATGT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	990
PspFI	CCCAGC	2 cut(s)	140, 562
PspGI	CCWGG	1 cut(s)	990
PspN4I	GGNNCC	1 cut(s)	996
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	2 cut(s)	133, 475
PsuI	RGATCY	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	961
RsaI	GTAC	4 cut(s)	176, 497, 536, 996
RsaNI	GTAC	4 cut(s)	175, 496, 535, 995
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	233, 380
SatI	GCNGC	3 cut(s)	120, 962, 965
Sau3AI	GATC	4 cut(s)	370, 433, 870, 1028
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	760
ScrFI	CCNGG	1 cut(s)	992
SetI	ASST	9 cut(s)	31, 306, 359, 501, 595, 775, 945, 963, 993
SexAI	ACCWGGT	1 cut(s)	990
SfaNI	GCATC	6 cut(s)	106, 502, 667, 689, 802, 851
SfcI	CTRYAG	2 cut(s)	129, 471
SinI	GGWCC	1 cut(s)	44
SmiI	ATTTAAAT	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	6 cut(s)	259, 416, 441, 466, 710, 829
SsiI	CCGC	4 cut(s)	398, 515, 965, 1042
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	990
SwaI	ATTTAAAT	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	580
TasI	AATT	6 cut(s)	259, 416, 441, 466, 710, 829
TatI	WGTACW	2 cut(s)	174, 534
TauI	GCSGC	1 cut(s)	967
TfiI	GAWTC	2 cut(s)	340, 548
Tru1I	TTAA	2 cut(s)	233, 380
Tru9I	TTAA	2 cut(s)	233, 380
TseFI	GTSAC	3 cut(s)	407, 752, 976
TseI	GCWGC	2 cut(s)	119, 961
Tsp45I	GTSAC	3 cut(s)	407, 752, 976
TspDTI	ATGAA	7 cut(s)	327, 353, 585, 675, 722, 727, 848
TspGWI	ACGGA	1 cut(s)	809
Van91I	CCANNNNNTGG	1 cut(s)	1004
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	4 cut(s)	259, 466, 710, 829
XceI	RCATGY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	585
ZrmI	AGTACT	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.