Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000574.1

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

194183 .. 198536

Gene Structure 4354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000574.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgaagaagacccttgttttccacagtggccgagcccccaaaggtgccaggaccaattgggttatgcatgagtaccgcctcgataaccaggaattggagaaagctggaataatagagaaagatgcgtatgtgctctgtaggatattccagaagagtggtactgggcccaagaatggggagcagtatggtgctccatttattgaggaggaatgggatgaagaagatgaggtttatggacctggtgaagaggctattgctaatgaagtagcagtcagcggtgggccgtatactgaagcgaatgagctcagcgatgagggatatgttgaggcaattgaccttgatcagattgacacaggtgttcctgaaagtggtcctcgtccattgaacttctatcatggggagacaagcaactatattgagcaatctggggacttagttgaagatgctgcaaagactgcagtaggcgctggggaaactctggaatattgcgaagagcagaagtactttgacttaccagagcagtatgagatggaagcaaagcctgtcaaagttgaatacttaacttcggactaccatgacaaccagaatttcttcaacttaccagaggcggtggggatgaagaagacccttgttttccacagtggccgggcccccaaaggcgccaggaccaattgggttatgcatgagtaccgcctcgataaccaggaattggagaaagctggaataatagagaaagatgcgtatgtgctctgtaggatattccagaagagtggtactgggcccaagaatggggagcagtatggtgctccatttattgaggaggaatgggatgaagaagatgaggtttatggacctggtgaagaggctattgctaatgaagtagcagtcagcggtgggccgtatactgaagcaaatgagctcagcgatgggggatatgttgaggcaattgaccttgatcagagtatgcctcataacaatactaaatgcccactatacgcagcttcgcactgttttcacttttcagaggtgtcaagcgtatcacttgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

349

Amino Acids

38.95

Weight (kDa)

4.4

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	44, 659
AccB7I	CCANNNNNTGG	2 cut(s)	94, 709
AccI	GTMKAC	2 cut(s)	287, 902
AciI	CCGC	5 cut(s)	76, 276, 608, 691, 891
AcoI	YGGCCR	2 cut(s)	28, 643
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	312, 927
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	5 cut(s)	74, 160, 503, 689, 775
AfiI	CCNNNNNNNGG	7 cut(s)	94, 173, 174, 368, 709, 788, 789
AgsI	TTSAA	4 cut(s)	385, 440, 554, 595
AjnI	CCWGG	6 cut(s)	47, 87, 238, 662, 702, 853
AluBI	AGCT	5 cut(s)	104, 304, 719, 919, 1001
AluI	AGCT	5 cut(s)	104, 304, 719, 919, 1001
Alw21I	GWGCWC	6 cut(s)	135, 193, 306, 750, 808, 921
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	7 cut(s)	28, 164, 281, 643, 648, 779, 896
ApaI	GGGCCC	3 cut(s)	168, 652, 783
ApeKI	GCWGC	2 cut(s)	446, 998
ApoI	RAATTY	1 cut(s)	586
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	2 cut(s)	467, 662
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	254, 869
AvaII	GGWCC	5 cut(s)	51, 236, 371, 666, 851
BaeGI	GKGCMC	3 cut(s)	168, 652, 783
BanI	GGYRCC	2 cut(s)	44, 659
BanII	GRGCYC	6 cut(s)	37, 168, 306, 652, 783, 921
BbsI	GAAGAC	2 cut(s)	14, 629
Bbv12I	GWGCWC	6 cut(s)	135, 193, 306, 750, 808, 921
BbvI	GCAGC	2 cut(s)	433, 1010
BccI	CCATC	2 cut(s)	523, 920
BceAI	ACGGC	2 cut(s)	268, 883
BciT130I	CCWGG	6 cut(s)	49, 89, 240, 664, 704, 855
BclI	TGATCA	2 cut(s)	340, 955
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	3 cut(s)	136, 456, 751
BfoI	RGCGCY	2 cut(s)	468, 663
BisI	GCNGC	2 cut(s)	447, 999
BlpI	GCTNAGC	2 cut(s)	305, 920
BlsI	GCNGC	2 cut(s)	448, 1000
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	7 cut(s)	49, 89, 240, 647, 664, 704, 855
Bme18I	GGWCC	5 cut(s)	51, 236, 371, 666, 851
BmiI	GGNNCC	6 cut(s)	46, 166, 650, 651, 661, 781
BmrFI	CCNGG	7 cut(s)	49, 89, 240, 647, 664, 704, 855
BmrI	ACTGGG	2 cut(s)	171, 786
BmsI	GCATC	3 cut(s)	112, 433, 727
BmuI	ACTGGG	2 cut(s)	171, 786
BpiI	GAAGAC	2 cut(s)	14, 629
BplI	GAGNNNNNCTC	2 cut(s)	952, 984
Bpu1102I	GCTNAGC	2 cut(s)	305, 920
BpuMI	CCSGG	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	7 cut(s)	94, 173, 174, 368, 709, 788, 789
Bse1I	ACTGG	2 cut(s)	166, 781
BseBI	CCWGG	6 cut(s)	49, 89, 240, 664, 704, 855
BseGI	GGATG	3 cut(s)	220, 621, 835
BseLI	CCNNNNNNNGG	7 cut(s)	94, 173, 174, 368, 709, 788, 789
BseMII	CTCAG	2 cut(s)	319, 934
BseNI	ACTGG	2 cut(s)	166, 781
BseRI	GAGGAG	2 cut(s)	218, 833
BseSI	GKGCMC	3 cut(s)	168, 652, 783
BseXI	GCAGC	2 cut(s)	433, 1010
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	7 cut(s)	30, 166, 283, 645, 650, 781, 898
BshNI	GGYRCC	2 cut(s)	44, 659
BsiHKAI	GWGCWC	6 cut(s)	135, 193, 306, 750, 808, 921
BsiSI	CCGG	1 cut(s)	646
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	7 cut(s)	94, 173, 174, 368, 709, 788, 789
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	7 cut(s)	30, 166, 283, 645, 650, 781, 898
Bsp120I	GGGCCC	3 cut(s)	164, 648, 779
Bsp143I	GATC	2 cut(s)	340, 955
Bsp1720I	GCTNAGC	2 cut(s)	305, 920
BspACI	CCGC	5 cut(s)	76, 276, 608, 691, 891
BspANI	GGCC	7 cut(s)	30, 166, 283, 645, 650, 781, 898
BspCNI	CTCAG	2 cut(s)	318, 933
BspLI	GGNNCC	6 cut(s)	46, 166, 650, 651, 661, 781
BspMAI	CTGCAG	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	486
BspT107I	GGYRCC	2 cut(s)	44, 659
BsrI	ACTGG	2 cut(s)	166, 781
BssMI	GATC	2 cut(s)	340, 955
BssNAI	GTATAC	2 cut(s)	288, 903
BssNI	GRCGYC	1 cut(s)	660
Bst1107I	GTATAC	2 cut(s)	288, 903
Bst2UI	CCWGG	6 cut(s)	49, 89, 240, 664, 704, 855
Bst4CI	ACNGT	3 cut(s)	26, 641, 1010
Bst6I	CTCTTC	5 cut(s)	146, 240, 486, 761, 855
BstACI	GRCGYC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	305, 433, 920
BstF5I	GGATG	3 cut(s)	220, 621, 835
BstH2I	RGCGCY	2 cut(s)	468, 663
BstHHI	GCGC	2 cut(s)	467, 662
BstKTI	GATC	2 cut(s)	343, 958
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	340, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 464
BstNI	CCWGG	6 cut(s)	49, 89, 240, 664, 704, 855
BstSCI	CCNGG	7 cut(s)	47, 87, 238, 645, 662, 702, 853
BstSFI	CTRYAG	3 cut(s)	136, 456, 751
BstSLI	GKGCMC	3 cut(s)	168, 652, 783
BstV1I	GCAGC	2 cut(s)	433, 1010
BstV2I	GAAGAC	2 cut(s)	14, 629
BstXI	CCANNNNNNTGG	2 cut(s)	155, 770
BstZ17I	GTATAC	2 cut(s)	288, 903
BsuRI	GGCC	7 cut(s)	30, 166, 283, 645, 650, 781, 898
BtgZI	GCGATG	2 cut(s)	324, 939
BtsCI	GGATG	3 cut(s)	220, 621, 835
BtsIMutI	CAGTG	3 cut(s)	31, 646, 1006
CfoI	GCGC	2 cut(s)	467, 662
CsiI	ACCWGGT	2 cut(s)	238, 853
Csp6I	GTAC	5 cut(s)	73, 159, 502, 688, 774
CviAII	CATG	4 cut(s)	68, 395, 575, 683
CviQI	GTAC	5 cut(s)	73, 159, 502, 688, 774
DdeI	CTNAG	3 cut(s)	305, 433, 920
DinI	GGCGCC	1 cut(s)	661
DpnI	GATC	2 cut(s)	342, 957
DpnII	GATC	2 cut(s)	340, 955
EaeI	YGGCCR	2 cut(s)	28, 643
Eam1104I	CTCTTC	5 cut(s)	146, 240, 486, 761, 855
EarI	CTCTTC	5 cut(s)	146, 240, 486, 761, 855
Ecl136II	GAGCTC	2 cut(s)	304, 919
Eco24I	GRGCYC	6 cut(s)	37, 168, 306, 652, 783, 921
Eco47I	GGWCC	5 cut(s)	51, 236, 371, 666, 851
Eco53kI	GAGCTC	2 cut(s)	304, 919
Eco57I	CTGAAG	2 cut(s)	312, 927
EcoICRI	GAGCTC	2 cut(s)	304, 919
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRII	CCWGG	6 cut(s)	47, 87, 238, 662, 702, 853
EcoT22I	ATGCAT	2 cut(s)	69, 684
EcoT38I	GRGCYC	6 cut(s)	37, 168, 306, 652, 783, 921
EgeI	GGCGCC	1 cut(s)	661
EheI	GGCGCC	1 cut(s)	661
FaeI	CATG	4 cut(s)	71, 398, 578, 686
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	4 cut(s)	67, 394, 574, 682
FbaI	TGATCA	2 cut(s)	340, 955
FblI	GTMKAC	2 cut(s)	287, 902
Fnu4HI	GCNGC	2 cut(s)	447, 999
FokI	GGATG	3 cut(s)	227, 628, 842
FriOI	GRGCYC	6 cut(s)	37, 168, 306, 652, 783, 921
Fsp4HI	GCNGC	2 cut(s)	447, 999
GlaI	GCGC	2 cut(s)	466, 661
GluI	GCNGC	2 cut(s)	447, 999
GsaI	CCCAGC	1 cut(s)	471
HaeII	RGCGCY	2 cut(s)	468, 663
HaeIII	GGCC	7 cut(s)	30, 166, 283, 645, 650, 781, 898
HapII	CCGG	1 cut(s)	646
HhaI	GCGC	2 cut(s)	467, 662
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	4 cut(s)	71, 398, 578, 686
Hin6I	GCGC	2 cut(s)	465, 660
HinP1I	GCGC	2 cut(s)	465, 660
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	2 cut(s)	254, 869
Hpy166II	GTNNAC	2 cut(s)	288, 903
Hpy188I	TCNGA	4 cut(s)	345, 568, 960, 1024
Hpy188III	TCNNGA	4 cut(s)	148, 362, 479, 763
Hpy8I	GTNNAC	2 cut(s)	288, 903
HpyCH4III	ACNGT	3 cut(s)	26, 641, 1010
HpyCH4V	TGCA	4 cut(s)	67, 449, 458, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 464
HpyF3I	CTNAG	3 cut(s)	305, 433, 920
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	4 cut(s)	71, 398, 578, 686
HspAI	GCGC	2 cut(s)	465, 660
KasI	GGCGCC	1 cut(s)	659
Ksp22I	TGATCA	2 cut(s)	340, 955
Kzo9I	GATC	2 cut(s)	340, 955
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	4 cut(s)	178, 196, 793, 811
Lsp1109I	GCAGC	2 cut(s)	433, 1010
LweI	GCATC	3 cut(s)	112, 433, 727
MabI	ACCWGGT	2 cut(s)	238, 853
MalI	GATC	2 cut(s)	342, 957
MboI	GATC	2 cut(s)	340, 955
MfeI	CAATTG	4 cut(s)	55, 330, 670, 945
MluCI	AATT	7 cut(s)	55, 92, 330, 586, 670, 707, 945
Mly113I	GGCGCC	1 cut(s)	660
Mph1103I	ATGCAT	2 cut(s)	69, 684
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	1 cut(s)	560
MspA1I	CMGCKG	2 cut(s)	276, 891
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	7 cut(s)	49, 89, 240, 647, 664, 704, 855
MunI	CAATTG	4 cut(s)	55, 330, 670, 945
MvaI	CCWGG	6 cut(s)	49, 89, 240, 664, 704, 855
MwoI	GCNNNNNNNGC	2 cut(s)	455, 464
NarI	GGCGCC	1 cut(s)	660
NciI	CCSGG	1 cut(s)	647
NdeII	GATC	2 cut(s)	340, 955
NlaIII	CATG	4 cut(s)	71, 398, 578, 686
NlaIV	GGNNCC	6 cut(s)	46, 166, 650, 651, 661, 781
NmeAIII	GCCGAG	1 cut(s)	56
NsiI	ATGCAT	2 cut(s)	69, 684
PciSI	GCTCTTC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	590
PflMI	CCANNNNNTGG	2 cut(s)	94, 709
PkrI	GCNGC	2 cut(s)	448, 1000
PluTI	GGCGCC	1 cut(s)	663
Psp124BI	GAGCTC	2 cut(s)	306, 921
Psp6I	CCWGG	6 cut(s)	47, 87, 238, 662, 702, 853
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	6 cut(s)	47, 87, 238, 662, 702, 853
PspN4I	GGNNCC	6 cut(s)	46, 166, 650, 651, 661, 781
PspOMI	GGGCCC	3 cut(s)	164, 648, 779
PstI	CTGCAG	1 cut(s)	460
RsaI	GTAC	5 cut(s)	74, 160, 503, 689, 775
RsaNI	GTAC	5 cut(s)	73, 159, 502, 688, 774
SacI	GAGCTC	2 cut(s)	306, 921
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	2 cut(s)	447, 999
Sau3AI	GATC	2 cut(s)	340, 955
ScaI	AGTACT	1 cut(s)	503
ScrFI	CCNGG	7 cut(s)	49, 89, 240, 647, 664, 704, 855
SexAI	ACCWGGT	2 cut(s)	238, 853
SfaNI	GCATC	3 cut(s)	112, 433, 727
SfcI	CTRYAG	3 cut(s)	136, 456, 751
SfoI	GGCGCC	1 cut(s)	661
SinI	GGWCC	5 cut(s)	51, 236, 371, 666, 851
Sse9I	AATT	7 cut(s)	55, 92, 330, 586, 670, 707, 945
SsiI	CCGC	5 cut(s)	76, 276, 608, 691, 891
SspDI	GGCGCC	1 cut(s)	659
SspI	AATATT	1 cut(s)	485
SstI	GAGCTC	2 cut(s)	306, 921
StyD4I	CCNGG	7 cut(s)	47, 87, 238, 645, 662, 702, 853
TaaI	ACNGT	3 cut(s)	26, 641, 1010
TaqI	TCGA	2 cut(s)	81, 696
TasI	AATT	7 cut(s)	55, 92, 330, 586, 670, 707, 945
TatI	WGTACW	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	3 cut(s)	31, 646, 1013
TseI	GCWGC	2 cut(s)	446, 998
TspDTI	ATGAA	6 cut(s)	17, 231, 276, 632, 846, 891
TspRI	CASTG	3 cut(s)	31, 646, 1013
Van91I	CCANNNNNTGG	2 cut(s)	94, 709
VpaK11BI	GGWCC	5 cut(s)	51, 236, 371, 666, 851
XapI	RAATTY	1 cut(s)	586
XmiI	GTMKAC	2 cut(s)	287, 902
XmnI	GAANNNNTTC	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	503
Zsp2I	ATGCAT	2 cut(s)	69, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.