Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

4937769 .. 4940689

Gene Structure 2921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGGAGGAATGGGACGATGATGACGTGACTTGTGTACCTGGGGAAGAGGCGGCTGCTAATGTAGTGGCAGTCAGCGAAGAGCCAGATAATGAAGCAATGGATGTCAACAATGGGGCATATGTTGAAGCATTTGACCTTGATCAGAAGCTTGACACAGGAATTCTGTCTGAAAGTGCACCACCTCCTTTGAACTTCTATCATGGGGAGACGAGCAACTACATTGAGCATTATGGGGACTTTGTTGAAGATGATACAAAGGCTGTGATGGGCACTGGGGAAACTTCGGAATACTGCGAACACCAGATGTTCTTTGGATACCCAGAGCATTATGAGACGGTTGGGAACCCAGTCAAAAATGAATATATAACCTCACAAAATCCCGAGGACTTGAAGTTTGTTGACTTGACAGAGCACTATGAGGCTGATGCAAAACCAGTCAAAGATGAATGCTTTCTTGAACCAAGCGATGGTGCAAATCCATCTGTGATCAATTATTCACTTAATGAACCATATTTGGATGCTACTGAGAATAAGCCATTTGGTGATGGGCTGTTCCTTGAAACTAATGATCTTTCAAATCCAGTCGAGTCAACTGCAGGCTTTGACATGCTTGATGAGTACCTTACATACTTTGATGCCAATGATGACATCTCTCAGTATATTGATTTTGATTCTTGTGGCTATGTTCCTGACCAAGGTCCATCTGACCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

240

Amino Acids

26.73

Weight (kDa)

4.05

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	470
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	162
AfaI	GTAC	2 cut(s)	39, 623
AfiI	CCNNNNNNNGG	2 cut(s)	470, 698
AgsI	TTSAA	7 cut(s)	128, 193, 248, 394, 461, 563, 579
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	2 cut(s)	181, 417
Alw26I	GTCTC	2 cut(s)	203, 329
Alw44I	GTGCAC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	383
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	701
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	2 cut(s)	181, 275
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
Bbv12I	GWGCWC	2 cut(s)	181, 417
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	5 cut(s)	262, 464, 490, 542, 712
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	311
BclI	TGATCA	2 cut(s)	142, 489
BcoDI	GTCTC	2 cut(s)	203, 329
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	701
BmeT110I	CYCGRG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	42
BmrI	ACTGGG	2 cut(s)	285, 344
BmsI	GCATC	3 cut(s)	418, 511, 628
BmuI	ACTGGG	2 cut(s)	285, 344
BoxI	GACNNNNGTC	1 cut(s)	699
BsaJI	CCNNGG	3 cut(s)	41, 384, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 698
Bse1I	ACTGG	4 cut(s)	280, 350, 437, 584
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	41, 384, 697
BseGI	GGATG	2 cut(s)	109, 526
BseLI	CCNNNNNNNGG	2 cut(s)	470, 698
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	519, 671
BseNI	ACTGG	4 cut(s)	280, 350, 437, 584
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	181, 275
BseXI	GCAGC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	181, 417
BsiHKCI	CYCGRG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	29, 251
BslI	CCNNNNNNNGG	2 cut(s)	470, 698
BsmAI	GTCTC	2 cut(s)	203, 329
BsmBI	CGTCTC	2 cut(s)	203, 329
BsmFI	GGGAC	2 cut(s)	29, 251
BsmI	GAATGC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	3 cut(s)	181, 275, 417
Bsp143I	GATC	3 cut(s)	142, 489, 571
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	520, 670
BspLI	GGNNCC	1 cut(s)	347
BspMAI	CTGCAG	1 cut(s)	601
BspQI	GCTCTTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	4 cut(s)	280, 350, 437, 584
BssECI	CCNNGG	3 cut(s)	41, 384, 697
BssMI	GATC	3 cut(s)	142, 489, 571
BssT1I	CCWWGG	1 cut(s)	697
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	42, 75
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	2 cut(s)	528, 657
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	2 cut(s)	109, 526
BstKTI	GATC	3 cut(s)	145, 492, 574
BstMAI	GTCTC	2 cut(s)	203, 329
BstMBI	GATC	3 cut(s)	142, 489, 571
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	613
BstPAI	GACNNNNGTC	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	2 cut(s)	181, 275
BstV1I	GCAGC	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	109, 526
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	38, 622
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	2 cut(s)	203, 610
CviJI	RGCY	9 cut(s)	56, 85, 151, 263, 425, 538, 553, 603, 684
CviKI_1	RGCY	9 cut(s)	56, 85, 151, 263, 425, 538, 553, 603, 684
CviQI	GTAC	2 cut(s)	38, 622
DdeI	CTNAG	2 cut(s)	528, 657
DpnI	GATC	3 cut(s)	144, 491, 573
DpnII	GATC	3 cut(s)	142, 489, 571
Eam1104I	CTCTTC	2 cut(s)	42, 75
EarI	CTCTTC	2 cut(s)	42, 75
Eco130I	CCWWGG	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	697
Esp3I	CGTCTC	2 cut(s)	203, 329
FaeI	CATG	2 cut(s)	206, 613
FaqI	GGGAC	2 cut(s)	29, 251
FatI	CATG	2 cut(s)	202, 609
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	2 cut(s)	142, 489
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	2 cut(s)	116, 533
Fsp4HI	GCNGC	2 cut(s)	54, 57
GluI	GCNGC	2 cut(s)	54, 57
Hin1II	CATG	2 cut(s)	206, 613
HincII	GTYRAC	3 cut(s)	109, 403, 594
HindII	GTYRAC	3 cut(s)	109, 403, 594
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	590, 674
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	5 cut(s)	38, 109, 179, 403, 594
Hpy188I	TCNGA	4 cut(s)	147, 172, 289, 709
Hpy188III	TCNNGA	3 cut(s)	383, 458, 692
Hpy8I	GTNNAC	5 cut(s)	38, 109, 179, 403, 594
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	179, 431, 476, 599
HpyF3I	CTNAG	2 cut(s)	528, 657
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	206, 613
Ksp22I	TGATCA	2 cut(s)	142, 489
Kzo9I	GATC	3 cut(s)	142, 489, 571
LguI	GCTCTTC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	3 cut(s)	418, 511, 628
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	144, 491, 573
MboI	GATC	3 cut(s)	142, 489, 571
MboII	GAAGA	3 cut(s)	59, 92, 260
MhlI	GDGCHC	3 cut(s)	181, 275, 417
MluCI	AATT	2 cut(s)	162, 493
MlyI	GAGTC	1 cut(s)	599
MnlI	CCTC	5 cut(s)	43, 195, 379, 382, 415
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	3 cut(s)	142, 489, 571
NlaIII	CATG	2 cut(s)	206, 613
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	674
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PshAI	GACNNNNGTC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	39, 623
RsaNI	GTAC	2 cut(s)	38, 622
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	3 cut(s)	142, 489, 571
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	3 cut(s)	181, 275, 417
SetI	ASST	8 cut(s)	30, 43, 141, 153, 187, 374, 627, 703
SfaNI	GCATC	3 cut(s)	418, 511, 628
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	701
Sse9I	AATT	2 cut(s)	162, 493
SsiI	CCGC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	588
TasI	AATT	2 cut(s)	162, 493
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	108, 375, 462, 522
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	701
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.