Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Reverse (-)

20666162 .. 20666732

Gene Structure 571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0117800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGCGCAAGAAATGGTCAGAACTTGAAGAACAGACCCTTCTCACGAAGTATTCTGAGCTTCTCAGCTCTGGAGCTCTAGCCAAGCTCAAAACTCATGAGAAAAAATTCAAGCCCATAGCGGAGCATGTGAACTTAGTGCACAACCTTGACGACCCTGTTACCTTCCCTTTCAAATGGTCCTGGCGCGACGTGTCAATCAAGGTCCAAAACATGCGCCACCAGTACCTGGGAGTCAAGCAGAAGATCCGCGTCTCTAAGGATGAGTTCAACTGGAAGGATGAAGAAGAAGAAGAAGGAGAAGATGGTACTGGTGGTGATGACGATAATCGTAGCGAGGAATTGGGTAAAACTGAAGTTGGTGAGATTGGGGGTGAAAGGGAAATTGGGGACATGGGAATGGCTCAAAAAAGGAAAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

141

Amino Acids

16.31

Weight (kDa)

5.66

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	2 cut(s)	189, 252
AciI	CCGC	2 cut(s)	122, 250
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	227, 310
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	29, 112, 175, 271
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	182, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	4 cut(s)	61, 69, 77, 88
AluI	AGCT	4 cut(s)	61, 69, 77, 88
Alw21I	GWGCWC	2 cut(s)	79, 144
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 189, 219
AspS9I	GGNCC	2 cut(s)	180, 205
AsuHPI	GGTGA	3 cut(s)	329, 374, 386
AvaII	GGWCC	2 cut(s)	180, 205
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	79, 144
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	2 cut(s)	184, 230
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	184, 230
Bme18I	GGWCC	2 cut(s)	180, 205
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	180, 205
BmrFI	CCNGG	2 cut(s)	184, 230
BpmI	CTGGAG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	223, 278, 316
BseBI	CCWGG	2 cut(s)	184, 230
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	268, 286
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	48, 79
BseNI	ACTGG	3 cut(s)	223, 278, 316
BseSI	GKGCMC	1 cut(s)	144
Bsh1236I	CGCG	2 cut(s)	189, 252
BsiHKAI	GWGCWC	2 cut(s)	79, 144
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	79, 144
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	122, 250
BspCNI	CTCAG	2 cut(s)	49, 78
BspFNI	CGCG	2 cut(s)	189, 252
BspHI	TCATGA	1 cut(s)	97
BspPI	GGATC	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	223, 278, 316
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	184, 230
BstDEI	CTNAG	4 cut(s)	57, 65, 136, 258
BstF5I	GGATG	2 cut(s)	268, 286
BstFNI	CGCG	2 cut(s)	189, 252
BstHHI	GCGC	3 cut(s)	9, 189, 219
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	246
BstNI	CCWGG	2 cut(s)	184, 230
BstNSI	RCATGY	2 cut(s)	131, 217
BstSCI	CCNGG	2 cut(s)	182, 228
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	2 cut(s)	189, 252
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	268, 286
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	3 cut(s)	9, 189, 219
Cfr13I	GGNCC	2 cut(s)	180, 205
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	226, 309
CviAII	CATG	4 cut(s)	98, 128, 214, 394
CviJI	RGCY	7 cut(s)	61, 69, 77, 83, 88, 115, 404
CviKI_1	RGCY	7 cut(s)	61, 69, 77, 83, 88, 115, 404
CviQI	GTAC	2 cut(s)	226, 309
DdeI	CTNAG	4 cut(s)	57, 65, 136, 258
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	180, 205
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	182, 228
EcoT38I	GRGCYC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	4 cut(s)	101, 131, 217, 397
FaiI	YATR	5 cut(s)	99, 119, 129, 215, 395
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	4 cut(s)	97, 127, 213, 393
FokI	GGATG	2 cut(s)	275, 293
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	8, 188, 218
GsuI	CTGGAG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	3 cut(s)	9, 189, 219
Hin1II	CATG	4 cut(s)	101, 131, 217, 397
Hin6I	GCGC	3 cut(s)	7, 187, 217
HinP1I	GCGC	3 cut(s)	7, 187, 217
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	3 cut(s)	329, 374, 386
Hpy166II	GTNNAC	2 cut(s)	133, 142
Hpy188I	TCNGA	2 cut(s)	22, 58
Hpy188III	TCNNGA	3 cut(s)	46, 72, 98
Hpy8I	GTNNAC	2 cut(s)	133, 142
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	50, 175, 271, 290
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	142
HpyF3I	CTNAG	4 cut(s)	57, 65, 136, 258
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	101, 131, 217, 397
HspAI	GCGC	3 cut(s)	7, 187, 217
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	74, 124
LpnPI	CCDG	9 cut(s)	57, 169, 171, 196, 215, 236, 242, 259, 297
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	7 cut(s)	41, 256, 296, 299, 302, 305, 314
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	79, 144
MluCI	AATT	4 cut(s)	107, 341, 384, 421
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	184, 230
MvaI	CCWGG	2 cut(s)	184, 230
MvnI	CGCG	2 cut(s)	189, 252
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	4 cut(s)	101, 131, 217, 397
NspI	RCATGY	2 cut(s)	131, 217
PagI	TCATGA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	229
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	182, 228
PspGI	CCWGG	2 cut(s)	182, 228
PspPI	GGNCC	2 cut(s)	180, 205
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	2 cut(s)	227, 310
RsaNI	GTAC	2 cut(s)	226, 309
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	180, 205
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	184, 230
SduI	GDGCHC	2 cut(s)	79, 144
SetI	ASST	9 cut(s)	63, 71, 79, 90, 150, 167, 195, 207, 231
SinI	GGWCC	2 cut(s)	180, 205
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	107, 341, 384, 421
SsiI	CCGC	2 cut(s)	122, 250
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	182, 228
TaiI	ACGT	1 cut(s)	195
TasI	AATT	4 cut(s)	107, 341, 384, 421
TspDTI	ATGAA	2 cut(s)	17, 297
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	180, 205
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	2 cut(s)	131, 217
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.