Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

6967226 .. 6972169

Gene Structure 4944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1073200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGGCCCGCGGCAAAGAGAATTCACTCGCTCCTGGGTTCCGATTCCACCCAACCGATGAAGAACTAGTCTGGTACTATCTGAAGCGTAAGGTCTCCGGCAAGAACTTCCGATTTGACCCCATATCGGTCATCGATATCTACAAGACTGAGCCTTGGGACCTCCCTGGCAAGTCGAAGCTGAAGACTAGGGACTTGGAGTGGTACTTTTTCAGTTTTCTGGATAAGAAGTATGGAAATTCGTCGAGGACGAATCGGGCTACTGAAAAAGGGTACTGGAAGACTACGGGTAAGGATCGCCCTATTAAACATAATTCCCGGGATGTTGGGATGAAGAAGACGCTGGTTTTCCATAGCGGGCGAGCCCCCACCGGTGCAAGAACCAATTGGGTTATGCATGAGTATCGCCTTTCCAACGAGGAGTTGGAAAAAGCTGGAATTCAACAGAAGGATCCGTATGTGCTTTGTAGGATATTCCAGAAGAGTGGCACGGGACCGAAGAATGGGGAGAAGTACGGCGCCCCGGTTATGGAGGAGGAATGGGACGATGATGACGTGACTTGTGTACCTGGTGAAGAGGCGGCTGCTAATGTAGTGGCAGTCAGCGAAGAGCCAGATAATGAAGCAAATGATTTCAACAATGGGGCTTATGTTGAAGCATTTGACCTTGATCAGAATCTTGACACAGGAATTCCGTCTGAAAGTGCACCACCTCCTTTGAACTTCTATCATGGGGAGACGAGCAACTACATTGAGCATTATGGGGACTTTGTTGAAGATGATACAAAGGCTGTGATAGGCACTGGGGAAACTTCTGAATATTGCGAACACCAGATGTTCTTTGGATACCCAGAGCATTATGAGACGGTTGGGAACCCAGTCAAAAATGAATATATAACCTCACAAAATCCTGAGGACCTGAAGTTTGTTGACTTGACAGAGCACTATGAGGCTGATGCAAAACCAGTCAAAGATGAATGCTTTCTTGAACCAAGCGATGGTGCAAATCCATCTGTTGTCAATTATTCACTTAATGAACCATATTTGGATGCTACTGAGAATAATAAGCCATTTGGTGATGGGCTGTTCCTTGAAACTAATGATCTTTCAAATCCAGTCGAGTCAACTGCAGGCTTTGACATGCTTGATGAGTACCTTACATACTTTGATGCCAATGATGACATCTCTCAGTATATTGATTTTGATTCTTGTGGCAATGTTCCTGACCAAGCTCCATCTAACCAGAAGCTTCTGAATGGTGAAACTGAACCACAACCAATGGGAGGTGATCATCTTGTACAACCAGAGCCACAACCAATGGGAGGCGAACATCTTGTACAACCAGAGGATACTGATGATGCATCTTTGTCAAAGAAAATGCCCGAGTCCAAGTTTGAATCAGATGGTAACTATCCCTTCATCAAAAAGGCGAGTCACATGATGTTGGGCAGCATACCGGCTCCACCTGCATTTGCTTCAGAGTTCCCTGCTAAAGAGGCAATGCTTAGGTTAAATTCTGGTGCATCGTCTTCCAGTTCGGTTCATGTTACTGCAGGCATGATTAGAATTAGAGACATAACTTCAAGTGACAACAGGATGGACTGGTCTTTTGGAAAGGATGGGGTTGTCAACCTTGTGTTTTCTGTTCAGCTGTCGCAGAATGATGGAAACTCTGGCAATCTGGTGCCGGTCGGTGGCTCACTCTCTGGAAAGACGGGATGTGTGGTGATGCGGGGATGGTTTTTGTTTATGTTTCTCTGGGTTCTGTTTCTTTCTATGAGTTTCAAAATCGGAAGCTACATCTGTACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

604

Amino Acids

67.5

Weight (kDa)

4.67

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 136	8.7e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1471
Acc36I	ACCTGC	1 cut(s)	1471
AccB1I	GGYRCC	2 cut(s)	515, 1681
AccB7I	CCANNNNNTGG	1 cut(s)	995
AccII	CGCG	1 cut(s)	9
AciI	CCGC	5 cut(s)	7, 9, 354, 578, 1729
AclWI	GGATC	3 cut(s)	300, 443, 456
AcsI	RAATTY	5 cut(s)	19, 235, 435, 687, 1510
AcuI	CTGAAG	4 cut(s)	101, 200, 938, 1458
AcyI	GRCGYC	1 cut(s)	516
AfaI	GTAC	9 cut(s)	74, 203, 272, 512, 564, 1151, 1296, 1335, 1804
AfiI	CCNNNNNNNGG	7 cut(s)	124, 500, 526, 995, 1280, 1319, 1691
AgeI	ACCGGT	1 cut(s)	368
AhlI	ACTAGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	4 cut(s)	31, 163, 565, 1805
AluBI	AGCT	6 cut(s)	178, 431, 1229, 1246, 1648, 1794
AluI	AGCT	6 cut(s)	178, 431, 1229, 1246, 1648, 1794
Alw21I	GWGCWC	2 cut(s)	706, 942
Alw26I	GTCTC	4 cut(s)	97, 728, 854, 1563
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	3 cut(s)	300, 443, 456
Ama87I	CYCGRG	2 cut(s)	315, 1379
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	2 cut(s)	581, 1446
ApoI	RAATTY	5 cut(s)	19, 235, 435, 687, 1510
ArsI	GACNNNNNNTTYG	4 cut(s)	905, 937, 1589, 1621
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	978
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	4 cut(s)	4, 157, 491, 913
AsuC2I	CCSGG	3 cut(s)	316, 317, 521
AsuHPI	GGTGA	5 cut(s)	581, 1085, 1268, 1295, 1735
AvaI	CYCGRG	2 cut(s)	315, 1379
AvaII	GGWCC	3 cut(s)	157, 491, 913
AxyI	CCTNAGG	1 cut(s)	909
BaeGI	GKGCMC	1 cut(s)	706
BaeI	ACNNNNGTAYC	3 cut(s)	546, 579, 1786
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	2 cut(s)	515, 1681
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	4 cut(s)	188, 284, 341, 1518
Bbv12I	GWGCWC	2 cut(s)	706, 942
BbvI	GCAGC	2 cut(s)	568, 1458
BccI	CCATC	9 cut(s)	989, 1015, 1070, 1240, 1394, 1588, 1610, 1655, 1728
BceAI	ACGGC	1 cut(s)	529
BcgI	CGANNNNNNTGC	4 cut(s)	383, 417, 1106, 1140
BciT130I	CCWGG	4 cut(s)	33, 165, 567, 1807
BciVI	GTATCC	2 cut(s)	836, 1339
BclI	TGATCA	2 cut(s)	667, 1285
BcnI	CCSGG	3 cut(s)	316, 317, 521
BcoDI	GTCTC	4 cut(s)	97, 728, 854, 1563
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	2 cut(s)	65, 186
BfmI	CTRYAG	2 cut(s)	1125, 1548
BfoI	RGCGCY	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	1471
BfuI	GTATCC	2 cut(s)	836, 1339
BisI	GCNGC	4 cut(s)	10, 579, 582, 1447
BlsI	GCNGC	4 cut(s)	11, 580, 583, 1448
Bme1390I	CCNGG	7 cut(s)	33, 165, 316, 317, 521, 567, 1807
Bme18I	GGWCC	3 cut(s)	157, 491, 913
BmeT110I	CYCGRG	2 cut(s)	315, 1379
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	4 cut(s)	4, 157, 491, 913
BmiI	GGNNCC	8 cut(s)	38, 158, 450, 492, 517, 872, 1458, 1683
BmrFI	CCNGG	7 cut(s)	33, 165, 316, 317, 521, 567, 1807
BmrI	ACTGGG	2 cut(s)	810, 869
BmsI	GCATC	7 cut(s)	943, 1036, 1156, 1345, 1367, 1529, 1716
BmuI	ACTGGG	2 cut(s)	810, 869
BpiI	GAAGAC	4 cut(s)	188, 284, 341, 1518
Bpu10I	CCTNAGC	1 cut(s)	1502
BpuMI	CCSGG	3 cut(s)	316, 317, 521
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	6 cut(s)	7, 32, 152, 163, 315, 519
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	7 cut(s)	124, 500, 526, 995, 1280, 1319, 1691
Bse118I	RCCGGY	3 cut(s)	368, 1453, 1684
Bse1I	ACTGG	7 cut(s)	278, 805, 875, 962, 1112, 1530, 1604
Bse21I	CCTNAGG	1 cut(s)	909
Bse3DI	GCAATG	2 cut(s)	1219, 1503
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	4 cut(s)	33, 165, 567, 1807
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	6 cut(s)	7, 32, 152, 163, 315, 519
BseGI	GGATG	7 cut(s)	325, 333, 1051, 1599, 1621, 1721, 1739
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	7 cut(s)	124, 500, 526, 995, 1280, 1319, 1691
BseMI	GCAATG	2 cut(s)	1219, 1503
BseMII	CTCAG	4 cut(s)	138, 900, 1044, 1199
BseNI	ACTGG	7 cut(s)	278, 805, 875, 962, 1112, 1530, 1604
BseRI	GAGGAG	2 cut(s)	431, 545
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	568, 1458
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	1689
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	515, 1681
BshTI	ACCGGT	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	1689
BsiHKAI	GWGCWC	2 cut(s)	706, 942
BsiHKCI	CYCGRG	2 cut(s)	315, 1379
BsiSI	CCGG	6 cut(s)	96, 316, 369, 521, 1454, 1685
BslFI	GGGAC	5 cut(s)	170, 203, 504, 554, 776
BslI	CCNNNNNNNGG	7 cut(s)	124, 500, 526, 995, 1280, 1319, 1691
BsmAI	GTCTC	4 cut(s)	97, 728, 854, 1563
BsmBI	CGTCTC	2 cut(s)	728, 854
BsmFI	GGGAC	5 cut(s)	170, 203, 504, 554, 776
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	315, 1379
Bsp1286I	GDGCHC	3 cut(s)	364, 706, 942
Bsp1407I	TGTACA	2 cut(s)	1294, 1333
Bsp143I	GATC	5 cut(s)	292, 448, 667, 1099, 1285
BspACI	CCGC	5 cut(s)	7, 9, 354, 578, 1729
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	139, 901, 1045, 1198
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	8 cut(s)	38, 158, 450, 492, 517, 872, 1458, 1683
BspMAI	CTGCAG	2 cut(s)	1129, 1552
BspMI	ACCTGC	1 cut(s)	1471
BspPI	GGATC	3 cut(s)	300, 443, 456
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	515, 1681
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	1219, 1503
BsrFI	RCCGGY	3 cut(s)	368, 1453, 1684
BsrGI	TGTACA	2 cut(s)	1294, 1333
BsrI	ACTGG	7 cut(s)	278, 805, 875, 962, 1112, 1530, 1604
BssAI	RCCGGY	3 cut(s)	368, 1453, 1684
BssECI	CCNNGG	6 cut(s)	7, 32, 152, 163, 315, 519
BssMI	GATC	5 cut(s)	292, 448, 667, 1099, 1285
BssNI	GRCGYC	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	4 cut(s)	33, 165, 567, 1807
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	3 cut(s)	473, 567, 600
BstACI	GRCGYC	1 cut(s)	516
BstAUI	TGTACA	2 cut(s)	1294, 1333
BstC8I	GCNNGC	5 cut(s)	7, 356, 360, 1129, 1552
BstDEI	CTNAG	5 cut(s)	147, 909, 1053, 1185, 1502
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	7 cut(s)	325, 333, 1051, 1599, 1621, 1721, 1739
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	5 cut(s)	295, 451, 670, 1102, 1288
BstMAI	GTCTC	4 cut(s)	97, 728, 854, 1563
BstMBI	GATC	5 cut(s)	292, 448, 667, 1099, 1285
BstMCI	CGRYCG	1 cut(s)	1689
BstMWI	GCNNNNNNNGC	2 cut(s)	1463, 1493
BstNI	CCWGG	4 cut(s)	33, 165, 567, 1807
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	7 cut(s)	31, 163, 314, 315, 519, 565, 1805
BstSFI	CTRYAG	2 cut(s)	1125, 1548
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	568, 1458
BstV2I	GAAGAC	4 cut(s)	188, 284, 341, 1518
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	909
BsuI	GTATCC	2 cut(s)	836, 1339
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	1008
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	7 cut(s)	325, 333, 1051, 1599, 1621, 1721, 1739
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	1471
Cac8I	GCNNGC	5 cut(s)	7, 356, 360, 1129, 1552
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	3 cut(s)	368, 1453, 1684
Cfr13I	GGNCC	4 cut(s)	4, 157, 491, 913
Cfr42I	CCGCGG	1 cut(s)	10
Cfr9I	CCCGGG	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	346
CsiI	ACCWGGT	2 cut(s)	565, 1805
Csp6I	GTAC	9 cut(s)	73, 202, 271, 511, 563, 1150, 1295, 1334, 1803
CspAI	ACCGGT	1 cut(s)	368
CspCI	CAANNNNNGTGG	2 cut(s)	696, 731
CviAII	CATG	6 cut(s)	395, 728, 1138, 1435, 1541, 1555
CviQI	GTAC	9 cut(s)	73, 202, 271, 511, 563, 1150, 1295, 1334, 1803
DdeI	CTNAG	5 cut(s)	147, 909, 1053, 1185, 1502
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	5 cut(s)	294, 450, 669, 1101, 1287
DpnII	GATC	5 cut(s)	292, 448, 667, 1099, 1285
Eam1104I	CTCTTC	3 cut(s)	473, 567, 600
EarI	CTCTTC	3 cut(s)	473, 567, 600
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	157, 491, 913
Eco57I	CTGAAG	4 cut(s)	101, 200, 938, 1458
Eco81I	CCTNAGG	1 cut(s)	909
Eco88I	CYCGRG	2 cut(s)	315, 1379
EcoO109I	RGGNCCY	2 cut(s)	157, 913
EcoRI	GAATTC	3 cut(s)	19, 435, 687
EcoRII	CCWGG	4 cut(s)	31, 163, 565, 1805
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	2 cut(s)	396, 1360
EcoT38I	GRGCYC	1 cut(s)	364
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	2 cut(s)	728, 854
FaeI	CATG	6 cut(s)	398, 731, 1141, 1438, 1544, 1558
FaqI	GGGAC	5 cut(s)	170, 203, 504, 554, 776
FatI	CATG	6 cut(s)	394, 727, 1137, 1434, 1540, 1554
FauI	CCCGC	3 cut(s)	14, 347, 1722
FbaI	TGATCA	2 cut(s)	667, 1285
Fnu4HI	GCNGC	4 cut(s)	10, 579, 582, 1447
FokI	GGATG	7 cut(s)	332, 340, 1058, 1606, 1628, 1728, 1746
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	4 cut(s)	10, 579, 582, 1447
FspBI	CTAG	2 cut(s)	65, 186
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	4 cut(s)	10, 579, 582, 1447
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	6 cut(s)	96, 316, 369, 521, 1454, 1685
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	6 cut(s)	398, 731, 1141, 1438, 1544, 1558
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HincII	GTYRAC	3 cut(s)	928, 1122, 1627
HindII	GTYRAC	3 cut(s)	928, 1122, 1627
HindIII	AAGCTT	1 cut(s)	1244
HinfI	GANTC	8 cut(s)	42, 250, 673, 1118, 1202, 1382, 1394, 1429
HpaII	CCGG	6 cut(s)	96, 316, 369, 521, 1454, 1685
HphI	GGTGA	5 cut(s)	581, 1085, 1268, 1295, 1735
Hpy166II	GTNNAC	5 cut(s)	563, 704, 928, 1122, 1627
Hpy188III	TCNNGA	7 cut(s)	218, 475, 677, 908, 983, 1220, 1704
Hpy8I	GTNNAC	5 cut(s)	563, 704, 928, 1122, 1627
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	439, 1423
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1463, 1493
HpyF3I	CTNAG	5 cut(s)	147, 909, 1053, 1185, 1502
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	6 cut(s)	398, 731, 1141, 1438, 1544, 1558
HspAI	GCGC	1 cut(s)	516
KasI	GGCGCC	1 cut(s)	515
Ksp22I	TGATCA	2 cut(s)	667, 1285
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	292, 448, 667, 1099, 1285
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	34, 1234, 1462
Lsp1109I	GCAGC	2 cut(s)	568, 1458
LweI	GCATC	7 cut(s)	943, 1036, 1156, 1345, 1367, 1529, 1716
MabI	ACCWGGT	2 cut(s)	565, 1805
MaeI	CTAG	2 cut(s)	65, 186
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	5 cut(s)	553, 1403, 1430, 1543, 1583
MalI	GATC	5 cut(s)	294, 450, 669, 1101, 1287
MboI	GATC	5 cut(s)	292, 448, 667, 1099, 1285
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	3 cut(s)	364, 706, 942
MluCI	AATT	9 cut(s)	19, 235, 310, 382, 435, 687, 1018, 1510, 1563
Mly113I	GGCGCC	1 cut(s)	516
MlyI	GAGTC	3 cut(s)	1127, 1391, 1438
MmeI	TCCRAC	2 cut(s)	402, 435
Mph1103I	ATGCAT	2 cut(s)	396, 1360
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	3 cut(s)	303, 1029, 1508
MspA1I	CMGCKG	2 cut(s)	9, 1648
MspI	CCGG	6 cut(s)	96, 316, 369, 521, 1454, 1685
MspR9I	CCNGG	7 cut(s)	33, 165, 316, 317, 521, 567, 1807
MunI	CAATTG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	4 cut(s)	33, 165, 567, 1807
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	1463, 1493
NarI	GGCGCC	1 cut(s)	516
NciI	CCSGG	3 cut(s)	316, 317, 521
NdeII	GATC	5 cut(s)	292, 448, 667, 1099, 1285
NlaIII	CATG	6 cut(s)	398, 731, 1141, 1438, 1544, 1558
NlaIV	GGNNCC	8 cut(s)	38, 158, 450, 492, 517, 872, 1458, 1683
NmuCI	GTSAC	3 cut(s)	553, 1430, 1583
NsiI	ATGCAT	2 cut(s)	396, 1360
NspI	RCATGY	1 cut(s)	1141
PaqCI	CACCTGC	1 cut(s)	1471
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	2 cut(s)	245, 549
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	5 cut(s)	42, 250, 673, 1202, 1394
PflMI	CCANNNNNTGG	1 cut(s)	995
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	11, 580, 583, 1448
PleI	GAGTC	3 cut(s)	1126, 1390, 1437
PluTI	GGCGCC	1 cut(s)	519
PpsI	GAGTC	3 cut(s)	1126, 1390, 1437
PpuMI	RGGWCCY	2 cut(s)	157, 913
Psp5II	RGGWCCY	2 cut(s)	157, 913
Psp6I	CCWGG	4 cut(s)	31, 163, 565, 1805
PspGI	CCWGG	4 cut(s)	31, 163, 565, 1805
PspN4I	GGNNCC	8 cut(s)	38, 158, 450, 492, 517, 872, 1458, 1683
PspPI	GGNCC	4 cut(s)	4, 157, 491, 913
PspPPI	RGGWCCY	2 cut(s)	157, 913
PsrI	GAACNNNNNNTAC	2 cut(s)	1317, 1349
PstI	CTGCAG	2 cut(s)	1129, 1552
PsuI	RGATCY	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	1648
RsaI	GTAC	9 cut(s)	74, 203, 272, 512, 564, 1151, 1296, 1335, 1804
RsaNI	GTAC	9 cut(s)	73, 202, 271, 511, 563, 1150, 1295, 1334, 1803
SacII	CCGCGG	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	303, 1029, 1508
SatI	GCNGC	4 cut(s)	10, 579, 582, 1447
Sau3AI	GATC	5 cut(s)	292, 448, 667, 1099, 1285
Sau96I	GGNCC	4 cut(s)	4, 157, 491, 913
SchI	GAGTC	3 cut(s)	1127, 1391, 1438
ScrFI	CCNGG	7 cut(s)	33, 165, 316, 317, 521, 567, 1807
SduI	GDGCHC	3 cut(s)	364, 706, 942
SexAI	ACCWGGT	2 cut(s)	565, 1805
SfaNI	GCATC	7 cut(s)	943, 1036, 1156, 1345, 1367, 1529, 1716
SfcI	CTRYAG	2 cut(s)	1125, 1548
SfoI	GGCGCC	1 cut(s)	517
Sfr303I	CCGCGG	1 cut(s)	10
SgrAI	CRCCGGYG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	157, 491, 913
SmaI	CCCGGG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	9 cut(s)	19, 235, 310, 382, 435, 687, 1018, 1510, 1563
SsiI	CCGC	5 cut(s)	7, 9, 354, 578, 1729
SspDI	GGCGCC	1 cut(s)	515
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	2 cut(s)	65, 186
StyD4I	CCNGG	7 cut(s)	31, 163, 314, 315, 519, 565, 1805
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	4 cut(s)	132, 173, 242, 1116
TaqII	GACCGA	2 cut(s)	115, 508
TasI	AATT	9 cut(s)	19, 235, 310, 382, 435, 687, 1018, 1510, 1563
TatI	WGTACW	2 cut(s)	1294, 1333
TauI	GCSGC	2 cut(s)	12, 581
TfiI	GAWTC	5 cut(s)	42, 250, 673, 1202, 1394
Tru1I	TTAA	3 cut(s)	303, 1029, 1508
Tru9I	TTAA	3 cut(s)	303, 1029, 1508
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	3 cut(s)	553, 1430, 1583
TseI	GCWGC	2 cut(s)	581, 1446
Tsp45I	GTSAC	3 cut(s)	553, 1430, 1583
TspDTI	ATGAA	8 cut(s)	72, 344, 633, 900, 987, 1047, 1405, 1529
TspGWI	ACGGA	2 cut(s)	441, 681
TspMI	CCCGGG	1 cut(s)	315
TspRI	CASTG	1 cut(s)	805
Van91I	CCANNNNNTGG	1 cut(s)	995
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	3 cut(s)	157, 491, 913
XapI	RAATTY	5 cut(s)	19, 235, 435, 687, 1510
XceI	RCATGY	1 cut(s)	1141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	418, 836
XmaI	CCCGGG	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	2 cut(s)	65, 186
Zsp2I	ATGCAT	2 cut(s)	396, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.