Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Reverse (-)

29355405 .. 29357144

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1243200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACCTCACAAAGTCCTGAGGACCTAAAGTTTGTTGACTTGCCAGAGCACTATGAGGCTGATGCAAAATCAGTCAAAGATGAATGCTTTCTTGAACCAAGCGATGATGCAAATCCAGCTGTTGTCAATTACTCACTTAATGAACCGTATTTGAATGCTACGGAGAATACGCCAATTGGTGATGGGTTATTCCTTGAAGCTAATGATCTTTCAAATCCAGTCGAGTCAACTGCAGGTTTTGACATGCTTGATGAGTACCTTACATACTTTGATGCCAATGATGACATCTCTCAGTATATTGATTTCGATTCATGTGGAATGATGGGGGTTGAAAACTATGTTCCTGACGAAGCTCCAGCTGACCAGAAGCTTGTGAATGGTGAGACCGAGCCACAACCAATGGGAGGTGAACATGTACAACCAGAGCCACAGCCATTGGGAGGCGAACATCTTGTACAACCAGTGGATACTGATGATGCATCTGCATCTTCGTCAAAGAAAACGGCGGAGTTCAAGTTTGAGTCAGATGGTAACTACCCCTTCATCAAAAAGGCAAGTCACATGATGTTGGGCAGCATACCTGCTCCACCTGCATTTGCTTCGGAGTTCCCTGGTAAAGAGGCAATGCGTAGGTTAAATTCTGGTGCAGCATCTTCCAGTTCGGTTCATGTCACTGCTGCCATGATTAGAATTAGAGACATAACTTCAAGTGACAACAGGATGGACTGGTCTTTTGGAAAGGATGGGGTTGTCAACCTTGTCTTTTCTGTTCAGCTGTCACAGGATGACGGAAACTCTGGCAATCTGGTGCCAGTTGGTGGCTCACTCTCTGGAAAGACGGGATGTGTGGTGATGCGCGGGCTGGTTTTTGTTTATGTTTTTCTGGGTCCTATTTCTTTCCATGAGTTTAAAAATCGGGAGCTATATCTGTACCAGAAATGCTTGCATGGCTTGAGAACATGTGGACTTTTGGAGCGACTCTGGAATGGATGCATTAGGCTTACTAGTTGTTTGCCTGTTTGTATTATAACACGTGGATTAGAAACAACACGTGGTCGGTGTGAATCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

358

Amino Acids

39.04

Weight (kDa)

4.51

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	3 cut(s)	224, 589, 598
AccB1I	GGYRCC	1 cut(s)	808
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccII	CGCG	1 cut(s)	858
AciI	CCGC	2 cut(s)	506, 858
AcsI	RAATTY	1 cut(s)	637
AcvI	CACGTG	2 cut(s)	1034, 1052
AfaI	GTAC	4 cut(s)	257, 417, 456, 932
AfiI	CCNNNNNNNGG	3 cut(s)	404, 440, 818
AflIII	ACRYGT	4 cut(s)	412, 959, 1031, 1049
AgsI	TTSAA	7 cut(s)	95, 154, 197, 213, 332, 514, 708
AhlI	ACTAGT	1 cut(s)	1004
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	7 cut(s)	119, 200, 353, 359, 370, 775, 922
AluI	AGCT	7 cut(s)	119, 200, 353, 359, 370, 775, 922
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	377, 690
ApeKI	GCWGC	3 cut(s)	573, 647, 677
ApoI	RAATTY	1 cut(s)	637
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 716, 748
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	22, 887
AsuHPI	GGTGA	4 cut(s)	191, 392, 419, 862
AvaII	GGWCC	2 cut(s)	22, 887
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	808
BbrPI	CACGTG	2 cut(s)	1034, 1052
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	585, 659, 664
BccI	CCATC	5 cut(s)	176, 316, 521, 715, 737
BceAI	ACGGC	1 cut(s)	519
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 582, 616
BciT130I	CCWGG	1 cut(s)	612
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	377, 690
BcuI	ACTAGT	1 cut(s)	1004
BfaI	CTAG	2 cut(s)	1005, 1072
BfmI	CTRYAG	1 cut(s)	231
BfuAI	ACCTGC	3 cut(s)	224, 589, 598
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	574, 648, 678
BlsI	GCNGC	3 cut(s)	575, 649, 679
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	2 cut(s)	22, 887
BmgT120I	GGNCC	2 cut(s)	22, 887
BmiI	GGNNCC	2 cut(s)	810, 888
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	9 cut(s)	52, 97, 262, 466, 488, 494, 659, 843, 980
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	973
BsaAI	YACGTR	2 cut(s)	1034, 1052
BsaBI	GATNNNNATC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 440, 818
Bse1I	ACTGG	5 cut(s)	218, 461, 657, 731, 812
Bse21I	CCTNAGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	5 cut(s)	726, 748, 790, 848, 995
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	404, 440, 818
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	9, 305
BseNI	ACTGG	5 cut(s)	218, 461, 657, 731, 812
BseXI	GCAGC	3 cut(s)	585, 659, 664
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	1 cut(s)	858
BshNI	GGYRCC	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	404, 440, 818
BsmAI	GTCTC	2 cut(s)	377, 690
BsmI	GAATGC	2 cut(s)	89, 160
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	2 cut(s)	415, 454
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	506, 858
BspCNI	CTCAG	2 cut(s)	10, 304
BspFNI	CGCG	1 cut(s)	858
BspLI	GGNNCC	2 cut(s)	810, 888
BspMAI	CTGCAG	1 cut(s)	235
BspMI	ACCTGC	3 cut(s)	224, 589, 598
BspT107I	GGYRCC	1 cut(s)	808
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	630
BsrGI	TGTACA	2 cut(s)	415, 454
BsrI	ACTGG	5 cut(s)	218, 461, 657, 731, 812
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	147
BstAUI	TGTACA	2 cut(s)	415, 454
BstBAI	YACGTR	2 cut(s)	1034, 1052
BstC8I	GCNNGC	2 cut(s)	860, 944
BstDEI	CTNAG	2 cut(s)	18, 291
BstF5I	GGATG	5 cut(s)	726, 748, 790, 848, 995
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	2 cut(s)	377, 690
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 590, 948
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	3 cut(s)	247, 416, 963
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	3 cut(s)	585, 659, 664
Bsu36I	CCTNAGG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	5 cut(s)	726, 748, 790, 848, 995
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	468, 672
BveI	ACCTGC	3 cut(s)	224, 589, 598
Cac8I	GCNNGC	2 cut(s)	860, 944
CfoI	GCGC	1 cut(s)	858
Cfr13I	GGNCC	2 cut(s)	22, 887
Csp6I	GTAC	4 cut(s)	256, 416, 455, 931
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	9 cut(s)	244, 312, 413, 562, 668, 682, 902, 947, 960
CviQI	GTAC	4 cut(s)	256, 416, 455, 931
DdeI	CTNAG	2 cut(s)	18, 291
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraI	TTTAAA	1 cut(s)	910
EciI	GGCGGA	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	22, 887
Eco72I	CACGTG	2 cut(s)	1034, 1052
Eco81I	CCTNAGG	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	22, 887
EcoRII	CCWGG	1 cut(s)	610
EcoT22I	ATGCAT	2 cut(s)	481, 995
FaeI	CATG	9 cut(s)	247, 315, 416, 565, 671, 685, 905, 950, 963
FatI	CATG	9 cut(s)	243, 311, 412, 561, 667, 681, 901, 946, 959
FauI	CCCGC	1 cut(s)	851
Fnu4HI	GCNGC	3 cut(s)	574, 648, 678
FokI	GGATG	5 cut(s)	733, 755, 797, 855, 1002
Fsp4HI	GCNGC	3 cut(s)	574, 648, 678
FspBI	CTAG	2 cut(s)	1005, 1072
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	3 cut(s)	574, 648, 678
GsuI	CTGGAG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	9 cut(s)	247, 315, 416, 565, 671, 685, 905, 950, 963
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HincII	GTYRAC	3 cut(s)	37, 228, 754
HindII	GTYRAC	3 cut(s)	37, 228, 754
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	5 cut(s)	224, 308, 521, 978, 1064
HphI	GGTGA	4 cut(s)	191, 392, 419, 862
Hpy166II	GTNNAC	5 cut(s)	37, 228, 410, 754, 965
Hpy188I	TCNGA	2 cut(s)	526, 604
Hpy188III	TCNNGA	6 cut(s)	17, 92, 344, 831, 917, 982
Hpy8I	GTNNAC	5 cut(s)	37, 228, 410, 754, 965
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	1033, 1051
HpyCH4V	TGCA	9 cut(s)	65, 110, 233, 479, 485, 593, 647, 946, 993
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 590, 948
HpyF3I	CTNAG	2 cut(s)	18, 291
HpySE526I	ACGT	2 cut(s)	1033, 1051
Hsp92II	CATG	9 cut(s)	247, 315, 416, 565, 671, 685, 905, 950, 963
HspAI	GCGC	1 cut(s)	856
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	4 cut(s)	358, 589, 919, 973
Lsp1109I	GCAGC	3 cut(s)	585, 659, 664
LweI	GCATC	9 cut(s)	52, 97, 262, 466, 488, 494, 659, 843, 980
MaeI	CTAG	2 cut(s)	1005, 1072
MaeII	ACGT	2 cut(s)	1033, 1051
MaeIII	GTNAC	5 cut(s)	530, 557, 670, 710, 777
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	480, 645
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	127, 174, 637, 690
MlyI	GAGTC	3 cut(s)	233, 530, 972
MnlI	CCTC	6 cut(s)	13, 16, 49, 398, 434, 613
Mph1103I	ATGCAT	2 cut(s)	481, 995
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	138, 635, 909
MspA1I	CMGCKG	3 cut(s)	119, 359, 775
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	2 cut(s)	89, 160
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	3 cut(s)	116, 590, 948
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	9 cut(s)	247, 315, 416, 565, 671, 685, 905, 950, 963
NlaIV	GGNNCC	2 cut(s)	810, 888
NmuCI	GTSAC	4 cut(s)	557, 670, 710, 777
NsiI	ATGCAT	2 cut(s)	481, 995
NspI	RCATGY	3 cut(s)	247, 416, 963
PaqCI	CACCTGC	1 cut(s)	598
PciI	ACATGT	2 cut(s)	412, 959
PctI	GAATGC	2 cut(s)	89, 160
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	308, 1064
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	3 cut(s)	575, 649, 679
PleI	GAGTC	3 cut(s)	232, 529, 972
PmaCI	CACGTG	2 cut(s)	1034, 1052
PmlI	CACGTG	2 cut(s)	1034, 1052
PpsI	GAGTC	3 cut(s)	232, 529, 972
Ppu21I	YACGTR	2 cut(s)	1034, 1052
PpuMI	RGGWCCY	2 cut(s)	22, 887
PscI	ACATGT	2 cut(s)	412, 959
PsiI	TTATAA	1 cut(s)	1028
Psp5II	RGGWCCY	2 cut(s)	22, 887
Psp6I	CCWGG	1 cut(s)	610
PspCI	CACGTG	2 cut(s)	1034, 1052
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	810, 888
PspPI	GGNCC	2 cut(s)	22, 887
PspPPI	RGGWCCY	2 cut(s)	22, 887
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PstI	CTGCAG	1 cut(s)	235
PvuII	CAGCTG	3 cut(s)	119, 359, 775
RsaI	GTAC	4 cut(s)	257, 417, 456, 932
RsaNI	GTAC	4 cut(s)	256, 416, 455, 931
SaqAI	TTAA	3 cut(s)	138, 635, 909
SatI	GCNGC	3 cut(s)	574, 648, 678
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	22, 887
SchI	GAGTC	3 cut(s)	233, 530, 972
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	9 cut(s)	52, 97, 262, 466, 488, 494, 659, 843, 980
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	22, 887
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
SpeI	ACTAGT	1 cut(s)	1004
Sse9I	AATT	4 cut(s)	127, 174, 637, 690
SsiI	CCGC	2 cut(s)	506, 858
SspMI	CTAG	2 cut(s)	1005, 1072
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	1036, 1054
TaqI	TCGA	2 cut(s)	222, 306
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	4 cut(s)	127, 174, 637, 690
TatI	WGTACW	2 cut(s)	415, 454
TfiI	GAWTC	2 cut(s)	308, 1064
Tru1I	TTAA	3 cut(s)	138, 635, 909
Tru9I	TTAA	3 cut(s)	138, 635, 909
TscAI	CASTG	2 cut(s)	468, 679
TseFI	GTSAC	4 cut(s)	557, 670, 710, 777
TseI	GCWGC	3 cut(s)	573, 647, 677
Tsp45I	GTSAC	4 cut(s)	557, 670, 710, 777
TspDTI	ATGAA	5 cut(s)	96, 156, 300, 532, 656
TspGWI	ACGGA	2 cut(s)	176, 804
TspRI	CASTG	2 cut(s)	468, 679
Van91I	CCANNNNNTGG	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	22, 887
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	3 cut(s)	247, 416, 963
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	1005, 1072
Zsp2I	ATGCAT	2 cut(s)	481, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.