Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

54404298 .. 54407700

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCATTCAGACATTCAGTGGAAGGTCCAGTTCCGGCCTGCTACTGCGCTAACAATCAATGACAGAATATCAGATAAGAACAAGATGTCAAAGTTGATTTCTCCCTTGGAGGATTACAAAGTCGATATTGACTTCGAGTCGGAGAAATGTGGATGGTCTTTTGACGGTCGACGTCTTGCGAGGGCTGATAGTTGGACGGAGCTTGATTGGCCTAGGCCTAACTTCGTAGCAACCAGTTACTATAAGACGCTGAATTTTAGGACATGCAACTATATTGAGCAATCTGGGGACTTAGTTGAAGATGCTACAAAGACTGCAGTAGGCGCTGGGGAAACTCTGGAATATTGCGAAGAGCAAAAGTACTTTGACTTACCAGAGCAGTATGAGATGGAAGCAAAGATAATGATCAAATATCTTCTGATTGATCAATGTGGAGGGACTTCAAGTTGGGCACACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

153

Amino Acids

17.8

Weight (kDa)

4.79

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	299, 444
AhdI	GACNNNNNGTC	1 cut(s)	136
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
AoxI	GGCC	3 cut(s)	35, 209, 215
ApoI	RAATTY	1 cut(s)	253
AspA2I	CCTAGG	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	49, 326
AspS9I	GGNCC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	25
AvrII	CCTAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	454
BccI	CCATC	2 cut(s)	147, 382
BclI	TGATCA	2 cut(s)	405, 424
BfaI	CTAG	2 cut(s)	213, 460
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	327
BlnI	CCTAGG	1 cut(s)	212
BmcAI	AGTACT	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	25
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	25
BmsI	GCATC	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	105, 212
Bse1I	ACTGG	2 cut(s)	28, 234
Bse8I	GATNNNNATC	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	105, 212
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	28, 234
BseSI	GKGCMC	1 cut(s)	454
BseYI	CCCAGC	1 cut(s)	326
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	37, 211, 217
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	302, 451
BsmFI	GGGAC	2 cut(s)	302, 451
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	37, 211, 217
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	405, 424
BspANI	GGCC	3 cut(s)	37, 211, 217
BspMAI	CTGCAG	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	28, 234
BssECI	CCNNGG	2 cut(s)	105, 212
BssMI	GATC	2 cut(s)	405, 424
BssNI	GRCGYC	1 cut(s)	172
BssT1I	CCWWGG	2 cut(s)	105, 212
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	49, 326
BstKTI	GATC	2 cut(s)	408, 427
BstMBI	GATC	2 cut(s)	405, 424
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 323
BstNSI	RCATGY	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	37, 211, 217
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	2 cut(s)	49, 326
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	5 cut(s)	37, 185, 202, 211, 217
CviKI_1	RGCY	5 cut(s)	37, 185, 202, 211, 217
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	2 cut(s)	407, 426
DpnII	GATC	2 cut(s)	405, 424
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	105, 212
Eco147I	AGGCCT	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	105, 212
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	105, 212
FaeI	CATG	1 cut(s)	267
FaiI	YATR	4 cut(s)	243, 265, 273, 384
FaqI	GGGAC	2 cut(s)	302, 451
FatI	CATG	1 cut(s)	263
FbaI	TGATCA	2 cut(s)	405, 424
FblI	GTMKAC	1 cut(s)	169
FokI	GGATG	1 cut(s)	165
FspBI	CTAG	2 cut(s)	213, 460
GlaI	GCGC	2 cut(s)	48, 325
GsaI	CCCAGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	37, 211, 217
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	49, 326
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	267
Hin6I	GCGC	2 cut(s)	47, 324
HinP1I	GCGC	2 cut(s)	47, 324
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	4 cut(s)	10, 73, 142, 420
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	170
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	4, 267, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 323
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	267
HspAI	GCGC	2 cut(s)	47, 324
Ksp22I	TGATCA	2 cut(s)	405, 424
Kzo9I	GATC	2 cut(s)	405, 424
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	41, 47, 51, 247, 270, 312, 323, 387
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	213, 460
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	407, 426
MboI	GATC	2 cut(s)	405, 424
MboII	GAAGA	3 cut(s)	311, 362, 407
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	120, 173
MnlI	CCTC	3 cut(s)	103, 174, 428
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	4
MwoI	GCNNNNNNNGC	2 cut(s)	208, 323
NdeII	GATC	2 cut(s)	405, 424
NlaIII	CATG	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	345
PctI	GAATGC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	405, 424
Sau96I	GGNCC	1 cut(s)	25
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	3 cut(s)	27, 175, 204
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	253
SseBI	AGGCCT	1 cut(s)	217
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	213, 460
StuI	AGGCCT	1 cut(s)	217
StyI	CCWWGG	2 cut(s)	105, 212
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	123, 135, 169
TasI	AATT	1 cut(s)	253
TatI	WGTACW	1 cut(s)	360
TscAI	CASTG	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	267
XmaJI	CCTAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	2 cut(s)	213, 460
ZraI	GACGTC	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.