Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Reverse (-)

41190312 .. 41195296

Gene Structure 4985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGGCCGTCAGTCTTCGCAATCGCTCGCTCCCGGGTTCCGATTCCACCCCACCGACGAAGAGCTTGTCTGGTACTACCTGAAGCGCAAGGTCGCCGGAAAATCTTTCCGCTTCGACGCGATCTCCGTCGTCGATATCTACAAGATCGAGCCTTGGGACCTCCCTGGGAAGTCGAAGCTGAAAAGCAGGGACACGGAATGGTACTTCTTCAGTCTTCTGGACAAGAAGTATGGCAATTCGTCGAGGACGAATCGGGCTACCGAAAAAGGGTACTGGAAGACTACTGGGAAGGATCGCCCCGTTTGCCATAATTCCAGGGCTGTGGGGATGAAGAAGACCCTTGTCTTCCACAGTGGCCGGGCCCCCAAAGGTGCCAGGACCAATTGGGTTATGCATGAGTACCGCCTCGATAACCAGGAATTGGAGAAAGCTGGAATAATAGAGAAAGATGCATATGTGCTCTGTAGGATATTCCAGAAGAGTGGTACTGGGCCCAAGAATGGGGAGCAGTATGGTGCTCCATTTATTGAGGAGGAATGGGACGAAGAAGATGAGGTTTATGGACCTGGAGAAGAGGCTACTGCTAATGAAGTAGCAGTCAGCGGTGGGCCGTATACTGAAGCGAATGAACTCAGTGATGGGGGATATGTTGAGGCAATTGACCTTGATGAGAATATTGACACAGGTGTTCCTGAAAGTGGTCCTCGTCCATTGAACTTCTATCATGGGGAGACAAGCAACTATATTGAGCAATCTGGGGATTTTGTTGAAGATGCTGCAGAGACTGCAGTAGGCGCTGGGGAAACTCTGGAATATTGTGAAGAGCAGAAGTACTTTGACTTACCAGAGCAGTATGAGATGGATGCAAAGCCTGTCAAAGTTGAATACTTAACTTCGGAATACGATGACAACCAGAACTTCTTCAACTTACCAGAGTATTATGAGACTGACACAAAAGCGGTCAAAGATGAATATGTTGAACCAAGCCATAATATGAATCCTGTGGATGTCAGCTACTCACTCAATGATCCATATTTAAATGCTACTGAAAACCCGCCATTTGGTGACGGGCAATTCTTAGAAACTAATGATCTTTCAATTCCAGCCAATCCTGTTGAGCCAAATTCTGCAGGCTTTGATATGCTTGATGAGTACCTTACATACTTTGATGCGGATGATGACATCTCTCAGTACATTGATTTTGATTCTTGTGGAATGCTGGGGAATGAAAATACTGTTCCTAGTGAACCTCTGGTTGAGCAGTCTGTTATGGGTGAAACTCAGCCACTATCCACAGGAAGCCAACATCTTGTAGAGGCACATGATGCCAATGATGCATCTTCATCAAAACAAAAGCCGGACGTGAAATTTGGATCAGATGGCAAGTTTCCATTCATCACAAAGGCGAGTCACATGTTGGGCAGTATACCTGCTCCTCCTGCATTTGCTTCTGAGTTCCCTCCTAAAGATGCAATCCTTCGGTTGAATTCTGAAGTAGCATCCTCAAGTTCAGTTCATGCTGGCATGATCAGAATAAGAGACATAACTTCAAGCGACAACAGGGTGGAGTGGTCTATTGGTAAGGACGGGGTTGTCAACCTTGTGTTTTCTGTTCAGCTGCCGCATAGTGATGTCACTTCTTCCAACCTGGTACCAATGGGCGGCTCAGTCTCTGGCAAGACGGGATCTGTGGTCATGCGGGGCTGGTTTTTGTTCATGTTCTTCTGGGTCCTATTCATTACCATCAGTTTCAAAATCAGGAGCTATATATATGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

593

Amino Acids

66.34

Weight (kDa)

4.6

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	11 - 136	1.4e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1592
Acc36I	ACCTGC	1 cut(s)	1438
Acc65I	GGTACC	1 cut(s)	1651
AccB1I	GGYRCC	2 cut(s)	371, 1651
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccI	GTMKAC	2 cut(s)	614, 1426
AccII	CGCG	1 cut(s)	119
AciI	CCGC	9 cut(s)	109, 403, 603, 959, 1055, 1172, 1622, 1662, 1699
AclWI	GGATC	4 cut(s)	300, 1022, 1381, 1693
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	1123, 1367, 1486
AcuI	CTGAAG	4 cut(s)	101, 193, 639, 1512
AfaI	GTAC	9 cut(s)	74, 203, 272, 401, 487, 833, 1154, 1193, 1653
AfiI	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 698, 1061, 1661
AflIII	ACRYGT	1 cut(s)	1413
AgsI	TTSAA	9 cut(s)	715, 770, 884, 925, 980, 1098, 1486, 1551, 1753
AjiI	CACGTC	1 cut(s)	1363
AjnI	CCWGG	6 cut(s)	163, 314, 374, 414, 565, 1647
AluBI	AGCT	6 cut(s)	64, 178, 431, 1014, 1618, 1764
AluI	AGCT	6 cut(s)	64, 178, 431, 1014, 1618, 1764
Alw21I	GWGCWC	2 cut(s)	462, 520
Alw26I	GTCTC	5 cut(s)	725, 776, 938, 1533, 1675
AlwI	GGATC	4 cut(s)	300, 1022, 1381, 1693
AlwNI	CAGNNNCTG	2 cut(s)	785, 1673
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	5 cut(s)	4, 355, 360, 491, 608
ApaI	GGGCCC	2 cut(s)	364, 495
ApeKI	GCWGC	2 cut(s)	776, 1618
ApoI	RAATTY	3 cut(s)	1123, 1367, 1486
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 83, 1352, 1384
Asp700I	GAANNNNTTC	1 cut(s)	920
Asp718I	GGTACC	1 cut(s)	1651
AspLEI	GCGC	2 cut(s)	87, 797
AsuC2I	CCSGG	3 cut(s)	33, 34, 359
AsuHPI	GGTGA	2 cut(s)	1076, 1286
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	5 cut(s)	157, 378, 563, 701, 1729
BaeGI	GKGCMC	2 cut(s)	364, 495
BanI	GGYRCC	2 cut(s)	371, 1651
BanII	GRGCYC	2 cut(s)	364, 495
BbsI	GAAGAC	5 cut(s)	6, 206, 284, 337, 341
Bbv12I	GWGCWC	2 cut(s)	462, 520
BbvI	GCAGC	2 cut(s)	763, 1605
BccI	CCATC	4 cut(s)	632, 853, 1373, 1751
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	6 cut(s)	165, 316, 376, 416, 567, 1649
BclI	TGATCA	1 cut(s)	1527
BcnI	CCSGG	3 cut(s)	33, 34, 359
BcoDI	GTCTC	5 cut(s)	725, 776, 938, 1533, 1675
BfaI	CTAG	1 cut(s)	1242
BfmI	CTRYAG	4 cut(s)	463, 777, 786, 1128
BfoI	RGCGCY	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	1438
BisI	GCNGC	4 cut(s)	777, 1619, 1622, 1663
BlsI	GCNGC	4 cut(s)	778, 1620, 1623, 1664
BmcAI	AGTACT	1 cut(s)	833
Bme1390I	CCNGG	9 cut(s)	33, 34, 165, 316, 359, 376, 416, 567, 1649
Bme18I	GGWCC	5 cut(s)	157, 378, 563, 701, 1729
BmeT110I	CYCGRG	1 cut(s)	32
BmgBI	CACGTC	1 cut(s)	1363
BmiI	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1653, 1730
BmrFI	CCNGG	9 cut(s)	33, 34, 165, 316, 359, 376, 416, 567, 1649
BmrI	ACTGGG	2 cut(s)	294, 498
BmsI	GCATC	9 cut(s)	439, 763, 853, 1159, 1315, 1324, 1346, 1459, 1508
BmuI	ACTGGG	2 cut(s)	294, 498
BoxI	GACNNNNGTC	1 cut(s)	341
BpiI	GAAGAC	5 cut(s)	6, 206, 284, 337, 341
BpmI	CTGGAG	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	1489
BpuMI	CCSGG	3 cut(s)	33, 34, 359
BsaJI	CCNNGG	5 cut(s)	32, 152, 163, 164, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 698, 1061, 1661
Bse1I	ACTGG	3 cut(s)	278, 289, 493
BseBI	CCWGG	6 cut(s)	165, 316, 376, 416, 567, 1649
BseDI	CCNNGG	5 cut(s)	32, 152, 163, 164, 315
BseGI	GGATG	5 cut(s)	333, 868, 1012, 1180, 1499
BseLI	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 698, 1061, 1661
BseMII	CTCAG	5 cut(s)	646, 1202, 1295, 1443, 1680
BseNI	ACTGG	3 cut(s)	278, 289, 493
BseRI	GAGGAG	2 cut(s)	545, 1425
BseSI	GKGCMC	2 cut(s)	364, 495
BseXI	GCAGC	2 cut(s)	763, 1605
BseYI	CCCAGC	2 cut(s)	797, 1219
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BshNI	GGYRCC	2 cut(s)	371, 1651
BsiHKAI	GWGCWC	2 cut(s)	462, 520
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	4 cut(s)	33, 96, 358, 1358
BslFI	GGGAC	3 cut(s)	170, 203, 554
BslI	CCNNNNNNNGG	7 cut(s)	267, 421, 500, 501, 698, 1061, 1661
BsmAI	GTCTC	5 cut(s)	725, 776, 938, 1533, 1675
BsmFI	GGGAC	3 cut(s)	170, 203, 554
BsmI	GAATGC	1 cut(s)	1221
BsnI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BsoBI	CYCGRG	1 cut(s)	32
Bsp120I	GGGCCC	2 cut(s)	360, 491
Bsp1286I	GDGCHC	4 cut(s)	364, 462, 495, 520
Bsp143I	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
BspACI	CCGC	9 cut(s)	109, 403, 603, 959, 1055, 1172, 1622, 1662, 1699
BspANI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BspCNI	CTCAG	5 cut(s)	645, 1201, 1294, 1444, 1679
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1653, 1730
BspMAI	CTGCAG	3 cut(s)	781, 790, 1132
BspMI	ACCTGC	1 cut(s)	1438
BspPI	GGATC	4 cut(s)	300, 1022, 1381, 1693
BspQI	GCTCTTC	2 cut(s)	54, 816
BspT107I	GGYRCC	2 cut(s)	371, 1651
BsrI	ACTGG	3 cut(s)	278, 289, 493
BssECI	CCNNGG	5 cut(s)	32, 152, 163, 164, 315
BssMI	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
BssNAI	GTATAC	2 cut(s)	615, 1427
BssT1I	CCWWGG	1 cut(s)	152
Bst1107I	GTATAC	2 cut(s)	615, 1427
Bst2UI	CCWGG	6 cut(s)	165, 316, 376, 416, 567, 1649
Bst4CI	ACNGT	2 cut(s)	353, 1237
Bst6I	CTCTTC	4 cut(s)	54, 473, 567, 816
BstAPI	GCANNNNNTGC	2 cut(s)	785, 1325
BstC8I	GCNNGC	3 cut(s)	27, 1132, 1522
BstDEI	CTNAG	6 cut(s)	632, 1078, 1188, 1281, 1452, 1666
BstF5I	GGATG	5 cut(s)	333, 868, 1012, 1180, 1499
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	2 cut(s)	87, 797
BstKTI	GATC	8 cut(s)	123, 147, 295, 1030, 1093, 1376, 1530, 1688
BstMAI	GTCTC	5 cut(s)	725, 776, 938, 1533, 1675
BstMBI	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
BstMWI	GCNNNNNNNGC	6 cut(s)	303, 785, 794, 1325, 1334, 1439
BstNI	CCWGG	6 cut(s)	165, 316, 376, 416, 567, 1649
BstNSI	RCATGY	1 cut(s)	1417
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	9 cut(s)	31, 32, 163, 314, 357, 374, 414, 565, 1647
BstSFI	CTRYAG	4 cut(s)	463, 777, 786, 1128
BstSLI	GKGCMC	2 cut(s)	364, 495
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	763, 1605
BstV2I	GAAGAC	5 cut(s)	6, 206, 284, 337, 341
BstX2I	RGATCY	1 cut(s)	1685
BstXI	CCANNNNNNTGG	2 cut(s)	322, 482
BstYI	RGATCY	1 cut(s)	1685
BstZ17I	GTATAC	2 cut(s)	615, 1427
BsuRI	GGCC	5 cut(s)	6, 357, 362, 493, 610
BtrI	CACGTC	1 cut(s)	1363
BtsCI	GGATG	5 cut(s)	333, 868, 1012, 1180, 1499
BtsIMutI	CAGTG	2 cut(s)	358, 640
BveI	ACCTGC	1 cut(s)	1438
Cac8I	GCNNGC	3 cut(s)	27, 1132, 1522
CaiI	CAGNNNCTG	2 cut(s)	785, 1673
CfoI	GCGC	2 cut(s)	87, 797
Cfr9I	CCCGGG	1 cut(s)	32
CseI	GACGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	1647
Csp6I	GTAC	9 cut(s)	73, 202, 271, 400, 486, 832, 1153, 1192, 1652
CviAII	CATG	8 cut(s)	395, 725, 1322, 1414, 1517, 1525, 1696, 1717
CviQI	GTAC	9 cut(s)	73, 202, 271, 400, 486, 832, 1153, 1192, 1652
DdeI	CTNAG	6 cut(s)	632, 1078, 1188, 1281, 1452, 1666
DpnI	GATC	8 cut(s)	122, 146, 294, 1029, 1092, 1375, 1529, 1687
DpnII	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
DraI	TTTAAA	1 cut(s)	1038
DrdI	GACNNNNNNGTC	1 cut(s)	1592
DseDI	GACNNNNNNGTC	1 cut(s)	1592
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	4 cut(s)	54, 473, 567, 816
EarI	CTCTTC	4 cut(s)	54, 473, 567, 816
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	2 cut(s)	364, 495
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	5 cut(s)	157, 378, 563, 701, 1729
Eco57I	CTGAAG	4 cut(s)	101, 193, 639, 1512
Eco88I	CYCGRG	1 cut(s)	32
EcoO109I	RGGNCCY	3 cut(s)	157, 361, 1729
EcoRI	GAATTC	1 cut(s)	1486
EcoRII	CCWGG	6 cut(s)	163, 314, 374, 414, 565, 1647
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	3 cut(s)	396, 454, 1339
EcoT38I	GRGCYC	2 cut(s)	364, 495
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	8 cut(s)	398, 728, 1325, 1417, 1520, 1528, 1699, 1720
FaqI	GGGAC	3 cut(s)	170, 203, 554
FatI	CATG	8 cut(s)	394, 724, 1321, 1413, 1516, 1524, 1695, 1716
FauI	CCCGC	2 cut(s)	1062, 1692
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	1527
FblI	GTMKAC	2 cut(s)	614, 1426
Fnu4HI	GCNGC	4 cut(s)	777, 1619, 1622, 1663
FokI	GGATG	5 cut(s)	340, 875, 1019, 1187, 1486
FriOI	GRGCYC	2 cut(s)	364, 495
Fsp4HI	GCNGC	4 cut(s)	777, 1619, 1622, 1663
FspBI	CTAG	1 cut(s)	1242
GlaI	GCGC	2 cut(s)	86, 796
GluI	GCNGC	4 cut(s)	777, 1619, 1622, 1663
GsaI	CCCAGC	2 cut(s)	801, 1223
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	5 cut(s)	6, 357, 362, 493, 610
HapII	CCGG	4 cut(s)	33, 96, 358, 1358
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	87, 797
Hin1II	CATG	8 cut(s)	398, 728, 1325, 1417, 1520, 1528, 1699, 1720
Hin6I	GCGC	2 cut(s)	85, 795
HinP1I	GCGC	2 cut(s)	85, 795
HincII	GTYRAC	1 cut(s)	1597
HindII	GTYRAC	1 cut(s)	1597
HinfI	GANTC	5 cut(s)	42, 250, 997, 1205, 1408
HpaII	CCGG	4 cut(s)	33, 96, 358, 1358
HphI	GGTGA	2 cut(s)	1076, 1286
Hpy166II	GTNNAC	4 cut(s)	615, 1247, 1427, 1597
Hpy188I	TCNGA	6 cut(s)	41, 898, 1378, 1453, 1492, 1532
Hpy188III	TCNNGA	5 cut(s)	218, 475, 692, 809, 1759
Hpy8I	GTNNAC	4 cut(s)	615, 1247, 1427, 1597
Hpy99I	CGWCG	5 cut(s)	59, 119, 131, 134, 244
HpyAV	CCTTC	2 cut(s)	283, 1487
HpyCH4III	ACNGT	2 cut(s)	353, 1237
HpyCH4IV	ACGT	1 cut(s)	1362
HpyCH4V	TGCA	9 cut(s)	394, 452, 779, 788, 866, 1130, 1337, 1442, 1472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	303, 785, 794, 1325, 1334, 1439
HpyF3I	CTNAG	6 cut(s)	632, 1078, 1188, 1281, 1452, 1666
HpySE526I	ACGT	1 cut(s)	1362
Hsp92II	CATG	8 cut(s)	398, 728, 1325, 1417, 1520, 1528, 1699, 1720
HspAI	GCGC	2 cut(s)	85, 795
KpnI	GGTACC	1 cut(s)	1655
Ksp22I	TGATCA	1 cut(s)	1527
Kzo9I	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
LguI	GCTCTTC	2 cut(s)	54, 816
LmnI	GCTCC	5 cut(s)	34, 505, 523, 1438, 1761
Lsp1109I	GCAGC	2 cut(s)	763, 1605
LweI	GCATC	9 cut(s)	439, 763, 853, 1159, 1315, 1324, 1346, 1459, 1508
MabI	ACCWGGT	1 cut(s)	1647
MaeI	CTAG	1 cut(s)	1242
MaeII	ACGT	1 cut(s)	1362
MaeIII	GTNAC	3 cut(s)	1064, 1409, 1633
MalI	GATC	8 cut(s)	122, 146, 294, 1029, 1092, 1375, 1529, 1687
MboI	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
MfeI	CAATTG	2 cut(s)	382, 657
MflI	RGATCY	1 cut(s)	1685
MhlI	GDGCHC	4 cut(s)	364, 462, 495, 520
MlyI	GAGTC	1 cut(s)	1417
MmeI	TCCRAC	1 cut(s)	1668
Mph1103I	ATGCAT	3 cut(s)	396, 454, 1339
MroXI	GAANNNNTTC	1 cut(s)	920
MseI	TTAA	2 cut(s)	890, 1037
MslI	CAYNNNNRTG	1 cut(s)	1629
MspA1I	CMGCKG	2 cut(s)	603, 1618
MspI	CCGG	4 cut(s)	33, 96, 358, 1358
MspR9I	CCNGG	9 cut(s)	33, 34, 165, 316, 359, 376, 416, 567, 1649
MunI	CAATTG	2 cut(s)	382, 657
Mva1269I	GAATGC	1 cut(s)	1221
MvaI	CCWGG	6 cut(s)	165, 316, 376, 416, 567, 1649
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	6 cut(s)	303, 785, 794, 1325, 1334, 1439
NciI	CCSGG	3 cut(s)	33, 34, 359
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
NlaIII	CATG	8 cut(s)	398, 728, 1325, 1417, 1520, 1528, 1699, 1720
NlaIV	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1653, 1730
NmuCI	GTSAC	3 cut(s)	1064, 1409, 1633
NsiI	ATGCAT	3 cut(s)	396, 454, 1339
NspI	RCATGY	1 cut(s)	1417
PasI	CCCWGGG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	1413
PciSI	GCTCTTC	2 cut(s)	54, 816
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 245
PctI	GAATGC	1 cut(s)	1221
PdmI	GAANNNNTTC	1 cut(s)	920
PfeI	GAWTC	4 cut(s)	42, 250, 997, 1205
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	778, 1620, 1623, 1664
PleI	GAGTC	1 cut(s)	1416
PpsI	GAGTC	1 cut(s)	1416
PpuMI	RGGWCCY	2 cut(s)	157, 1729
PscI	ACATGT	1 cut(s)	1413
PshAI	GACNNNNGTC	1 cut(s)	341
Psp5II	RGGWCCY	2 cut(s)	157, 1729
Psp6I	CCWGG	6 cut(s)	163, 314, 374, 414, 565, 1647
PspFI	CCCAGC	2 cut(s)	797, 1219
PspGI	CCWGG	6 cut(s)	163, 314, 374, 414, 565, 1647
PspN4I	GGNNCC	8 cut(s)	38, 158, 362, 363, 373, 493, 1653, 1730
PspOMI	GGGCCC	2 cut(s)	360, 491
PspPPI	RGGWCCY	2 cut(s)	157, 1729
PstI	CTGCAG	3 cut(s)	781, 790, 1132
PstNI	CAGNNNCTG	2 cut(s)	785, 1673
PsuI	RGATCY	1 cut(s)	1685
PvuII	CAGCTG	1 cut(s)	1618
RsaI	GTAC	9 cut(s)	74, 203, 272, 401, 487, 833, 1154, 1193, 1653
RsaNI	GTAC	9 cut(s)	73, 202, 271, 400, 486, 832, 1153, 1192, 1652
RseI	CAYNNNNRTG	1 cut(s)	1629
SapI	GCTCTTC	2 cut(s)	54, 816
SaqAI	TTAA	2 cut(s)	890, 1037
SatI	GCNGC	4 cut(s)	777, 1619, 1622, 1663
Sau3AI	GATC	8 cut(s)	120, 144, 292, 1027, 1090, 1373, 1527, 1685
ScaI	AGTACT	1 cut(s)	833
SchI	GAGTC	1 cut(s)	1417
ScrFI	CCNGG	9 cut(s)	33, 34, 165, 316, 359, 376, 416, 567, 1649
SduI	GDGCHC	4 cut(s)	364, 462, 495, 520
SexAI	ACCWGGT	1 cut(s)	1647
SfaNI	GCATC	9 cut(s)	439, 763, 853, 1159, 1315, 1324, 1346, 1459, 1508
SfcI	CTRYAG	4 cut(s)	463, 777, 786, 1128
SinI	GGWCC	5 cut(s)	157, 378, 563, 701, 1729
SmaI	CCCGGG	1 cut(s)	34
SmiI	ATTTAAAT	1 cut(s)	1038
SmiMI	CAYNNNNRTG	1 cut(s)	1629
SmlI	CTYRAG	1 cut(s)	1504
SmoI	CTYRAG	1 cut(s)	1504
SsiI	CCGC	9 cut(s)	109, 403, 603, 959, 1055, 1172, 1622, 1662, 1699
SspI	AATATT	2 cut(s)	676, 815
SspMI	CTAG	1 cut(s)	1242
StyD4I	CCNGG	9 cut(s)	31, 32, 163, 314, 357, 374, 414, 565, 1647
StyI	CCWWGG	1 cut(s)	152
SwaI	ATTTAAAT	1 cut(s)	1038
TaaI	ACNGT	2 cut(s)	353, 1237
TaiI	ACGT	1 cut(s)	1365
TaqI	TCGA	6 cut(s)	114, 132, 147, 173, 242, 408
TatI	WGTACW	2 cut(s)	831, 1191
TauI	GCSGC	2 cut(s)	1624, 1665
TfiI	GAWTC	4 cut(s)	42, 250, 997, 1205
Tru1I	TTAA	2 cut(s)	890, 1037
Tru9I	TTAA	2 cut(s)	890, 1037
TscAI	CASTG	2 cut(s)	358, 640
TseFI	GTSAC	3 cut(s)	1064, 1409, 1633
TseI	GCWGC	2 cut(s)	776, 1618
Tsp45I	GTSAC	3 cut(s)	1064, 1409, 1633
TspGWI	ACGGA	2 cut(s)	115, 209
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	2 cut(s)	358, 640
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	5 cut(s)	157, 378, 563, 701, 1729
XapI	RAATTY	3 cut(s)	1123, 1367, 1486
XceI	RCATGY	1 cut(s)	1417
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	2 cut(s)	614, 1426
XmnI	GAANNNNTTC	1 cut(s)	920
XspI	CTAG	1 cut(s)	1242
ZrmI	AGTACT	1 cut(s)	833
Zsp2I	ATGCAT	3 cut(s)	396, 454, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.