Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004124

Physical Location & Seq

Genomic Coordinates Forward (+)

4940738 .. 4941476

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAGGCGATCATCTTGTACAACCAGAGCCACAACCAATGGGAGGCGAACATCTTGTACAACCAGAGGATACTGATGATGCATCTTTGTCAAAGAAAATACCCGAGTGCAAGTTTGAATCAGATGGTAACTATCCCTTCATCAAAAAGGCAAGTCACATGATGTTGGGCAGCATACCTGCTCCACCTGCGTTTGCTTCAGAGTTCCCTGCTAAAGAAGCAATGCTTCGGTTAAATTCTGGTGCATCGTCTTCCAGTTCGGTTCATGTTACTGCAGCCATGATTAGAATTAGAGACATAACTTCAAGTGACAACAGGATGGACTGGTCTTTTGGAAAGGATGGGGTGGTCAACCTTGTGTTTTCTGTTCAGCTGTCGCAGAATGACGGAAACTCTGGCAATCTGGTGCCGGTCGGTGGCTCACTCTCTGGAAAGACAGGATGTGTGGTGATGCGGGGATGGTTTTTGTTTATGTTTCTCTGGGTTCTGTTTCTTTCTATGAGTTTCAAAATCGGGAGCTACATCTGTACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

179

Amino Acids

19.31

Weight (kDa)

6.05

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10500 AT3G10500 AT5G04410
fragaria_vesca	FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501 FvH4_7g06501
malus_domestica	MD02G1243200.v1.1 MD02G1243600.v1.1 MD02G1243800.v1.1 MD07G1073200.v1.1
prunus_persica	Prupe.2G091500_v2.0.a1
pyrus_communis	pycom02g20980 pycom07g05650 pycom07g05660 pycom07g05670
rosa_chinensis	RchiOBHm_Chr1g0334901
rosa_laevigata	RLG00000029411
rosa_multiflora	Rmu_co8457141.1_g000001 Rmu_sc0000574.1_g000049
rosa_roxburghii	Rroxscaffold_1G00037320 Rroxscaffold_4G00316370
rosa_rugosa	Rorug01G0117800
rosa_samantha	Rh1AG141300 Rh1BG108800 Rh1CG133200 Rh1DG145700 Rh5CG119700 Rh5DG106800
rosa_wichuraiana	Rw1G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	2 cut(s)	187, 196
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	21, 60, 529
AfiI	CCNNNNNNNGG	2 cut(s)	44, 416
AgsI	TTSAA	3 cut(s)	119, 306, 508
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	2 cut(s)	373, 519
AluI	AGCT	2 cut(s)	373, 519
Alw26I	GTCTC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	171, 275
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AsuHPI	GGTGA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	104
BaeI	ACNNNNGTAYC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	183, 287
BccI	CCATC	4 cut(s)	119, 313, 335, 453
BciT130I	CCWGG	1 cut(s)	532
BciVI	GTATCC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	2 cut(s)	187, 196
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	172, 276
BlsI	GCNGC	2 cut(s)	173, 277
Bme1390I	CCNGG	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	4 cut(s)	70, 92, 254, 441
BpiI	GAAGAC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 416
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	255, 329
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	532
BseGI	GGATG	4 cut(s)	324, 346, 446, 464
BseLI	CCNNNNNNNGG	2 cut(s)	44, 416
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	255, 329
BseXI	GCAGC	2 cut(s)	183, 287
Bsh1285I	CGRYCG	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	406
BsiEI	CGRYCG	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	44, 416
BsmAI	GTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	104
Bsp1407I	TGTACA	2 cut(s)	19, 58
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	2 cut(s)	187, 196
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	409
BsrGI	TGTACA	2 cut(s)	19, 58
BsrI	ACTGG	2 cut(s)	255, 329
BssAI	RCCGGY	1 cut(s)	409
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	532
BstAUI	TGTACA	2 cut(s)	19, 58
BstF5I	GGATG	4 cut(s)	324, 346, 446, 464
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	10
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 218
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	183, 287
BstV2I	GAAGAC	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	324, 346, 446, 464
BveI	ACCTGC	2 cut(s)	187, 196
Cfr10I	RCCGGY	1 cut(s)	409
CsiI	ACCWGGT	1 cut(s)	530
Csp6I	GTAC	3 cut(s)	20, 59, 528
CviAII	CATG	3 cut(s)	160, 266, 280
CviJI	RGCY	5 cut(s)	31, 278, 373, 420, 519
CviKI_1	RGCY	5 cut(s)	31, 278, 373, 420, 519
CviQI	GTAC	3 cut(s)	20, 59, 528
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	530
EcoT22I	ATGCAT	1 cut(s)	85
FaeI	CATG	3 cut(s)	163, 269, 283
FaiI	YATR	7 cut(s)	161, 176, 267, 281, 299, 473, 500
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	159, 265, 279
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	172, 276
FokI	GGATG	4 cut(s)	331, 353, 453, 471
Fsp4HI	GCNGC	2 cut(s)	172, 276
GluI	GCNGC	2 cut(s)	172, 276
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	3 cut(s)	163, 269, 283
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	124, 202
Hpy188III	TCNNGA	2 cut(s)	429, 514
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	83, 111, 245, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 218
Hsp92II	CATG	3 cut(s)	163, 269, 283
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	187, 516
Lsp1109I	GCAGC	2 cut(s)	183, 287
LweI	GCATC	4 cut(s)	70, 92, 254, 441
MabI	ACCWGGT	1 cut(s)	530
MaeIII	GTNAC	4 cut(s)	128, 155, 268, 308
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	243
MluCI	AATT	2 cut(s)	235, 288
MnlI	CCTC	2 cut(s)	38, 61
Mph1103I	ATGCAT	1 cut(s)	85
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	188, 218
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	163, 269, 283
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	155, 308
NsiI	ATGCAT	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	173, 277
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	408
PsrI	GAACNNNNNNTAC	2 cut(s)	42, 74
PstI	CTGCAG	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	3 cut(s)	21, 60, 529
RsaNI	GTAC	3 cut(s)	20, 59, 528
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	2 cut(s)	172, 276
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	532
SetI	ASST	6 cut(s)	181, 190, 357, 375, 521, 536
SexAI	ACCWGGT	1 cut(s)	530
SfaNI	GCATC	4 cut(s)	70, 92, 254, 441
SfcI	CTRYAG	1 cut(s)	273
Sse9I	AATT	2 cut(s)	235, 288
SsiI	CCGC	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	530
TasI	AATT	2 cut(s)	235, 288
TatI	WGTACW	2 cut(s)	19, 58
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	155, 308
TseI	GCWGC	2 cut(s)	171, 275
Tsp45I	GTSAC	2 cut(s)	155, 308
TspDTI	ATGAA	2 cut(s)	130, 254
TspGWI	ACGGA	1 cut(s)	402
XapI	RAATTY	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.