Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

5692607 .. 5694181

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACTCCAACGACCAGGATCCGATTCCGTTCAGACCCGAAGACAACAACTTCTCCGGTTCCAAAACCTACGCCATGAGCGGCAAAATCATGCTAAGTGCAATAGTAATCCTCTTCTTCGTCGTCATTTTAATGGTCTTCCTCCATCTTTACGCTCGTTGGTATCTCCTCCGTGCTCGTAGACGTCATCTCCGTCGTCGTAGCCGTAACCGTCGCGCTACGATGGTTTTCTTCACCGCTGATCCTTCCACCGCCGCAACTTCCGTCGTCGCTTCACGTGGACTTGATCCAAACGTTATTAAATCTCTTCCTGTTTTCACTTTCTCCGACGAGACTCATAAAGATCCGATCGAATGCGCCGTTTGTTTATCGGAATTCGAAGAGAGCGAGACGGGTCGGGTTTTGCCCAATTGTCAACATACTTTTCATGTTGATTGTATTGATATGTGGTTTCATTCTCATTCCACTTGTCCTCTTTGTCGATCTCTCGTTGAGTCTCTCGCCGGGATTGAATCAACGGCGGCGGCGAGGGAGAGGGAAGTTGTGATTGCGGTTGATTCTGATCCGGTTTTGGTAATTGAACCGAGTTCTAGCTCTGGATTGACGGATGAACCACATGGATCTGGATCTTCTCAGATGCTGAGGGAAGATTCCGGGAGAAAACCGGCGGCGATTGAGGTTCCGAGGAGGACTTTTAGCGAGTTTGAAGATGAGTTGACTCGGAGAGACTCGCCGGCGAGTCAGTCGTTTAGGTCTCCGATGAGTCGGATGTTATCTTTCACTCGGATGTTGAGTAGAGATAGAAGAAGCGCTTCGTCTCCTATCGCCGGAGCTCCGCCGCTATCGCCGACGTTAAGCTGCCGGATACAGATGACCGAGTCAGATATCGAACGGGGAGGAGAAGAGAGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005798 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030100 GO:0030163 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0032879 GO:0033554 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048364 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051301 GO:0051603 GO:0051716 GO:0060627 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071214 GO:0071470 GO:0071704 GO:0071944 GO:0080134 GO:0097708 GO:0099402 GO:0104004 GO:0140096 GO:1901000 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

304

Amino Acids

34.05

Weight (kDa)

6.47

Isoelectric Point (pI)

85.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 161	2.7e-13	Ring finger domain
zf-RING_11	PF17123	118 - 147	5.8e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	118 - 160	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	119 - 160	9.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	120 - 161	1.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	1 cut(s)	216
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	8 cut(s)	14, 27, 236, 281, 338, 557, 628, 634
AcsI	RAATTY	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	184
AfeI	AGCGCT	1 cut(s)	811
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgsI	TTSAA	3 cut(s)	512, 581, 707
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	3 cut(s)	594, 833, 858
AluI	AGCT	3 cut(s)	594, 833, 858
Alw21I	GWGCWC	2 cut(s)	178, 835
Alw26I	GTCTC	6 cut(s)	326, 383, 501, 720, 759, 822
AlwI	GGATC	8 cut(s)	14, 27, 236, 281, 338, 557, 628, 634
AlwNI	CAGNNNCTG	1 cut(s)	640
Aor51HI	AGCGCT	1 cut(s)	811
ApeKI	GCWGC	1 cut(s)	858
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	811
AspLEI	GCGC	3 cut(s)	218, 359, 812
AsuC2I	CCSGG	2 cut(s)	505, 655
AsuHPI	GGTGA	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	835
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	48, 130
Bbv12I	GWGCWC	2 cut(s)	178, 835
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	2 cut(s)	153, 217
BceAI	ACGGC	3 cut(s)	189, 344, 534
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	858
BcnI	CCSGG	2 cut(s)	505, 655
BcoDI	GTCTC	6 cut(s)	326, 383, 501, 720, 759, 822
BfaI	CTAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	813
BfuI	GTATCC	1 cut(s)	858
BisI	GCNGC	7 cut(s)	82, 255, 522, 525, 669, 839, 859
BlsI	GCNGC	7 cut(s)	83, 256, 523, 526, 670, 840, 860
Bme1390I	CCNGG	3 cut(s)	17, 505, 655
BmiI	GGNNCC	3 cut(s)	21, 61, 681
BmrFI	CCNGG	3 cut(s)	17, 505, 655
BmsI	GCATC	1 cut(s)	627
BpiI	GAAGAC	2 cut(s)	48, 130
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	505, 655
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	2 cut(s)	561, 625
BsaHI	GRCGYC	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	759
BsaJI	CCNNGG	1 cut(s)	683
BsaWI	WCCGGW	2 cut(s)	56, 565
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	2 cut(s)	664, 733
Bse8I	GATNNNNATC	2 cut(s)	561, 625
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	3 cut(s)	613, 774, 792
BseJI	GATNNNNATC	2 cut(s)	561, 625
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMII	CTCAG	2 cut(s)	632, 647
BseRI	GAGGAG	3 cut(s)	158, 700, 912
BseXI	GCAGC	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	178, 835
BsiSI	CCGG	8 cut(s)	57, 504, 566, 654, 665, 734, 828, 862
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	6 cut(s)	326, 383, 501, 720, 759, 822
BsmBI	CGTCTC	2 cut(s)	383, 822
BsmI	GAATGC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	759
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	178, 835
Bsp143I	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
BspCNI	CTCAG	2 cut(s)	633, 646
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	21, 61, 681
BspPI	GGATC	8 cut(s)	14, 27, 236, 281, 338, 557, 628, 634
BspT104I	TTCGAA	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	759
BsrBI	CCGCTC	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	664, 733
BssAI	RCCGGY	2 cut(s)	664, 733
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
BssNI	GRCGYC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	4 cut(s)	119, 312, 375, 897
BstACI	GRCGYC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	3 cut(s)	95, 633, 641
BstF5I	GGATG	3 cut(s)	613, 774, 792
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	3 cut(s)	218, 359, 812
BstKTI	GATC	9 cut(s)	22, 244, 289, 346, 351, 485, 565, 623, 629
BstMAI	GTCTC	6 cut(s)	326, 383, 501, 720, 759, 822
BstMBI	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	15, 503, 653
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	845
BstV2I	GAAGAC	2 cut(s)	48, 130
BstX2I	RGATCY	4 cut(s)	19, 343, 620, 626
BstYI	RGATCY	4 cut(s)	19, 343, 620, 626
BsuI	GTATCC	1 cut(s)	858
BtsCI	GGATG	3 cut(s)	613, 774, 792
Cac8I	GCNNGC	1 cut(s)	735
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	3 cut(s)	218, 359, 812
Cfr10I	RCCGGY	2 cut(s)	664, 733
CviAII	CATG	4 cut(s)	76, 91, 428, 617
CviJI	RGCY	4 cut(s)	204, 594, 833, 858
CviKI_1	RGCY	4 cut(s)	204, 594, 833, 858
DdeI	CTNAG	3 cut(s)	95, 633, 641
DpnI	GATC	9 cut(s)	21, 243, 288, 345, 350, 484, 564, 622, 628
DpnII	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
Eam1104I	CTCTTC	4 cut(s)	119, 312, 375, 897
EarI	CTCTTC	4 cut(s)	119, 312, 375, 897
EciI	GGCGGA	1 cut(s)	825
Ecl136II	GAGCTC	1 cut(s)	833
Eco24I	GRGCYC	1 cut(s)	835
Eco31I	GGTCTC	1 cut(s)	759
Eco32I	GATATC	1 cut(s)	886
Eco47III	AGCGCT	1 cut(s)	811
Eco53kI	GAGCTC	1 cut(s)	833
Eco72I	CACGTG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	835
Esp3I	CGTCTC	2 cut(s)	383, 822
FaeI	CATG	4 cut(s)	79, 94, 431, 620
FaiI	YATR	7 cut(s)	77, 92, 339, 420, 429, 446, 618
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FatI	CATG	4 cut(s)	75, 90, 427, 616
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	7 cut(s)	82, 255, 522, 525, 669, 839, 859
FokI	GGATG	3 cut(s)	620, 781, 799
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	7 cut(s)	82, 255, 522, 525, 669, 839, 859
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	3 cut(s)	217, 358, 811
GluI	GCNGC	7 cut(s)	82, 255, 522, 525, 669, 839, 859
HaeII	RGCGCY	1 cut(s)	813
HapII	CCGG	8 cut(s)	57, 504, 566, 654, 665, 734, 828, 862
HhaI	GCGC	3 cut(s)	218, 359, 812
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	79, 94, 431, 620
Hin6I	GCGC	3 cut(s)	216, 357, 810
HinP1I	GCGC	3 cut(s)	216, 357, 810
HincII	GTYRAC	2 cut(s)	416, 717
HindII	GTYRAC	2 cut(s)	416, 717
HpaII	CCGG	8 cut(s)	57, 504, 566, 654, 665, 734, 828, 862
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	4 cut(s)	182, 281, 416, 717
Hpy188III	TCNNGA	2 cut(s)	597, 624
Hpy8I	GTNNAC	4 cut(s)	182, 281, 416, 717
Hpy99I	CGWCG	8 cut(s)	125, 198, 201, 216, 269, 272, 332, 853
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	4 cut(s)	184, 277, 294, 851
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	3 cut(s)	95, 633, 641
HpySE526I	ACGT	4 cut(s)	184, 277, 294, 851
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	79, 94, 431, 620
HspAI	GCGC	3 cut(s)	216, 357, 810
KroI	GCCGGC	1 cut(s)	733
KroNI	GCCGGC	1 cut(s)	735
Kzo9I	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
LmnI	GCTCC	2 cut(s)	830, 838
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	1 cut(s)	627
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	4 cut(s)	184, 277, 294, 851
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	9 cut(s)	21, 243, 288, 345, 350, 484, 564, 622, 628
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
MfeI	CAATTG	1 cut(s)	409
MflI	RGATCY	4 cut(s)	19, 343, 620, 626
MhlI	GDGCHC	2 cut(s)	178, 835
MluCI	AATT	3 cut(s)	374, 409, 576
MlyI	GAGTC	7 cut(s)	328, 503, 712, 722, 748, 772, 887
MmeI	TCCRAC	3 cut(s)	33, 351, 746
MreI	CGCCGGCG	1 cut(s)	733
MroNI	GCCGGC	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	811
MseI	TTAA	3 cut(s)	131, 300, 854
MslI	CAYNNNNRTG	2 cut(s)	131, 785
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	8 cut(s)	57, 504, 566, 654, 665, 734, 828, 862
MspR9I	CCNGG	3 cut(s)	17, 505, 655
MunI	CAATTG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	844
NaeI	GCCGGC	1 cut(s)	735
NciI	CCSGG	2 cut(s)	505, 655
NdeII	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
NgoMIV	GCCGGC	1 cut(s)	733
NlaIII	CATG	4 cut(s)	79, 94, 431, 620
NlaIV	GGNNCC	3 cut(s)	21, 61, 681
NspV	TTCGAA	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	5 cut(s)	190, 202, 357, 384, 524
PctI	GAATGC	1 cut(s)	359
PdiI	GCCGGC	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	811
PfeI	GAWTC	4 cut(s)	25, 512, 557, 650
PflFI	GACNNNGTC	1 cut(s)	877
PfoI	TCCNGGA	1 cut(s)	653
PkrI	GCNGC	7 cut(s)	83, 256, 523, 526, 670, 840, 860
Ple19I	CGATCG	1 cut(s)	351
PleI	GAGTC	7 cut(s)	328, 502, 712, 722, 747, 771, 886
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	7 cut(s)	328, 502, 712, 722, 747, 771, 886
Ppu21I	YACGTR	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	835
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	15
PspCI	CACGTG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	21, 61, 681
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	4 cut(s)	19, 343, 620, 626
PsyI	GACNNNGTC	1 cut(s)	877
PvuI	CGATCG	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	131, 785
SacI	GAGCTC	1 cut(s)	835
SaqAI	TTAA	3 cut(s)	131, 300, 854
SatI	GCNGC	7 cut(s)	82, 255, 522, 525, 669, 839, 859
Sau3AI	GATC	9 cut(s)	19, 241, 286, 343, 348, 482, 562, 620, 626
SchI	GAGTC	7 cut(s)	328, 503, 712, 722, 748, 772, 887
ScrFI	CCNGG	3 cut(s)	17, 505, 655
SduI	GDGCHC	2 cut(s)	178, 835
SfaNI	GCATC	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	378
SgrAI	CRCCGGYG	1 cut(s)	733
SmiMI	CAYNNNNRTG	2 cut(s)	131, 785
Sse9I	AATT	3 cut(s)	374, 409, 576
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	835
StyD4I	CCNGG	3 cut(s)	15, 503, 653
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	4 cut(s)	187, 280, 297, 854
TaqI	TCGA	4 cut(s)	351, 378, 481, 888
TaqII	GACCGA	1 cut(s)	890
TasI	AATT	3 cut(s)	374, 409, 576
TauI	GCSGC	6 cut(s)	84, 257, 524, 527, 671, 841
TfiI	GAWTC	4 cut(s)	25, 512, 557, 650
Tru1I	TTAA	3 cut(s)	131, 300, 854
Tru9I	TTAA	3 cut(s)	131, 300, 854
TseI	GCWGC	1 cut(s)	858
TspDTI	ATGAA	4 cut(s)	17, 416, 443, 624
TspGWI	ACGGA	5 cut(s)	18, 161, 182, 253, 620
Tth111I	GACNNNGTC	1 cut(s)	877
XapI	RAATTY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.