Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

58337 .. 60222

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgagtgttcgggtttggctcctttccgtgcatggagtcgtttgtcctctcaatggcggccagttgaggcgcagatcgagttgtgcggcggctgcggtggttgttcgtagtgagacatacggcggtggccaccagacatgcagcagtggtgcggactacgtgttgcacaggcaaattcccactagcagacaagaattcggtgagtccaagtctccaactgagagagaactagacaggaaactagtaatttcgacccgagtaagggccagggaagtaatttcccctcctccgcgtcaaccctgcggaagccgcagaggttctaagttcgagtctcccatgactatgtccggcttgtctagcttcaacgatgtccgcccggatgtgtctacacactccactcccccgtcggagccctacaagacgtcgtcgtttgggccgagaaggaaaccgatggatatcgcggtgccgagtcggcacgagagctttgggaggtcggaggctgagtcgccgtcgggtcaggcgtttcggtcgccgatgactcggatgctgtcgtttaaacggatgctgagcagagacaaaagaaacggcggcgtttcgccttccgggaatcccagttgtagctccgtcgccgagttggatattgagcgaggacgagaaggggctgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

222

Amino Acids

24.28

Weight (kDa)

10.16

Isoelectric Point (pI)

76.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	2 cut(s)	292, 461
AcoI	YGGCCR	2 cut(s)	58, 127
AcsI	RAATTY	2 cut(s)	174, 194
AcyI	GRCGYC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	53, 261, 262
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	364
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	360, 483, 621
AluI	AGCT	3 cut(s)	360, 483, 621
Alw26I	GTCTC	4 cut(s)	107, 216, 336, 567
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	4 cut(s)	58, 127, 264, 434
ApeKI	GCWGC	2 cut(s)	92, 141
ApoI	RAATTY	2 cut(s)	174, 194
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	264, 434
AsuC2I	CCSGG	2 cut(s)	377, 604
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	414
BauI	CACGAG	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	79, 153
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	3 cut(s)	136, 493, 601
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	377, 604
BcoDI	GTCTC	4 cut(s)	107, 216, 336, 567
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	4 cut(s)	183, 230, 242, 357
BglI	GCCNNNNNGGC	1 cut(s)	472
BisI	GCNGC	7 cut(s)	58, 87, 90, 93, 142, 310, 589
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	7 cut(s)	59, 88, 91, 94, 143, 311, 590
Bme1390I	CCNGG	3 cut(s)	268, 377, 604
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	264, 434
BmiI	GGNNCC	3 cut(s)	20, 411, 465
BmrFI	CCNGG	3 cut(s)	268, 377, 604
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	534, 552
BmuI	ACTGGG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	566
BpuMI	CCSGG	2 cut(s)	377, 604
BsaAI	YACGTR	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 261, 262
Bse1I	ACTGG	2 cut(s)	61, 612
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	385, 549, 567
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	53, 261, 262
BseMII	CTCAG	4 cut(s)	210, 492, 557, 654
BseNI	ACTGG	2 cut(s)	61, 612
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	79, 153
Bsh1236I	CGCG	2 cut(s)	292, 461
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	4 cut(s)	60, 129, 266, 436
BshNI	GGYRCC	1 cut(s)	463
BsiEI	CGRYCG	1 cut(s)	530
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	348, 377, 603
BslI	CCNNNNNNNGG	3 cut(s)	53, 261, 262
BsmAI	GTCTC	4 cut(s)	107, 216, 336, 567
BsnI	GGCC	4 cut(s)	60, 129, 266, 436
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	74
Bsp1720I	GCTNAGC	1 cut(s)	566
BspANI	GGCC	4 cut(s)	60, 129, 266, 436
BspCNI	CTCAG	4 cut(s)	211, 493, 558, 655
BspFNI	CGCG	2 cut(s)	292, 461
BspLI	GGNNCC	3 cut(s)	20, 411, 465
BspT107I	GGYRCC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	61, 612
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	219, 321, 501, 566, 663
BstF5I	GGATG	3 cut(s)	385, 549, 567
BstFNI	CGCG	2 cut(s)	292, 461
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	4 cut(s)	107, 216, 336, 567
BstMBI	GATC	1 cut(s)	74
BstMCI	CGRYCG	1 cut(s)	530
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 309, 357, 472
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	266, 375, 602
BstUI	CGCG	2 cut(s)	292, 461
BstV1I	GCAGC	2 cut(s)	79, 153
BsuRI	GGCC	4 cut(s)	60, 129, 266, 436
BtsCI	GGATG	3 cut(s)	385, 549, 567
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	264, 434
CseI	GACGC	1 cut(s)	281
CviAII	CATG	3 cut(s)	32, 138, 337
DdeI	CTNAG	5 cut(s)	219, 321, 501, 566, 663
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
DraI	TTTAAA	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	58, 127
EciI	GGCGGA	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	3 cut(s)	35, 141, 340
FaiI	YATR	5 cut(s)	33, 118, 139, 338, 344
FatI	CATG	3 cut(s)	31, 137, 336
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	7 cut(s)	58, 87, 90, 93, 142, 310, 589
FokI	GGATG	3 cut(s)	392, 556, 574
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	7 cut(s)	58, 87, 90, 93, 142, 310, 589
FspBI	CTAG	4 cut(s)	183, 230, 242, 357
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	7 cut(s)	58, 87, 90, 93, 142, 310, 589
HaeIII	GGCC	4 cut(s)	60, 129, 266, 436
HapII	CCGG	3 cut(s)	348, 377, 603
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	35, 141, 340
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HinfI	GANTC	7 cut(s)	36, 203, 329, 469, 503, 538, 607
HpaII	CCGG	3 cut(s)	348, 377, 603
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	296, 387
Hpy188I	TCNGA	3 cut(s)	409, 496, 543
Hpy8I	GTNNAC	2 cut(s)	296, 387
Hpy99I	CGWCG	5 cut(s)	409, 427, 430, 514, 629
HpyAV	CCTTC	3 cut(s)	435, 609, 650
HpyCH4IV	ACGT	2 cut(s)	159, 422
HpyCH4V	TGCA	3 cut(s)	31, 141, 166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 309, 357, 472
HpyF3I	CTNAG	5 cut(s)	219, 321, 501, 566, 663
HpySE526I	ACGT	2 cut(s)	159, 422
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	3 cut(s)	35, 141, 340
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	3 cut(s)	24, 409, 626
Lsp1109I	GCAGC	2 cut(s)	79, 153
LweI	GCATC	2 cut(s)	534, 552
MaeI	CTAG	4 cut(s)	183, 230, 242, 357
MaeII	ACGT	2 cut(s)	159, 422
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	4 cut(s)	174, 194, 246, 276
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	6 cut(s)	45, 212, 338, 478, 512, 532
MmeI	TCCRAC	4 cut(s)	239, 387, 474, 615
MnlI	CCTC	8 cut(s)	57, 60, 294, 297, 308, 483, 490, 641
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	3 cut(s)	348, 377, 603
MspR9I	CCNGG	3 cut(s)	268, 377, 604
MssI	GTTTAAAC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	2 cut(s)	292, 461
MwoI	GCNNNNNNNGC	4 cut(s)	92, 309, 357, 472
NciI	CCSGG	2 cut(s)	377, 604
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	35, 141, 340
NlaIV	GGNNCC	3 cut(s)	20, 411, 465
NmeAIII	GCCGAG	3 cut(s)	462, 492, 655
NspI	RCATGY	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	2 cut(s)	434, 518
PfeI	GAWTC	1 cut(s)	607
PflFI	GACNNNGTC	2 cut(s)	343, 424
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	7 cut(s)	59, 88, 91, 94, 143, 311, 590
PleI	GAGTC	6 cut(s)	44, 211, 337, 477, 511, 532
PmeI	GTTTAAAC	1 cut(s)	556
PpsI	GAGTC	6 cut(s)	44, 211, 337, 477, 511, 532
Ppu21I	YACGTR	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	20, 411, 465
PspPI	GGNCC	2 cut(s)	264, 434
PsyI	GACNNNGTC	2 cut(s)	343, 424
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	7 cut(s)	58, 87, 90, 93, 142, 310, 589
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	2 cut(s)	264, 434
SchI	GAGTC	6 cut(s)	45, 212, 338, 478, 512, 532
ScrFI	CCNGG	3 cut(s)	268, 377, 604
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	7 cut(s)	162, 319, 362, 425, 485, 494, 623
SfaNI	GCATC	2 cut(s)	534, 552
SmiMI	CAYNNNNRTG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	4 cut(s)	174, 194, 246, 276
SspMI	CTAG	4 cut(s)	183, 230, 242, 357
StyD4I	CCNGG	3 cut(s)	266, 375, 602
TaiI	ACGT	2 cut(s)	162, 425
TaqI	TCGA	3 cut(s)	77, 251, 327
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	4 cut(s)	174, 194, 246, 276
TauI	GCSGC	5 cut(s)	60, 89, 92, 312, 591
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	2 cut(s)	92, 141
TspGWI	ACGGA	3 cut(s)	16, 574, 613
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	2 cut(s)	343, 424
XapI	RAATTY	2 cut(s)	174, 194
XceI	RCATGY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	4 cut(s)	183, 230, 242, 357
ZraI	GACGTC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.