pycom16g13940

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
9991843 .. 9992790
948 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g13940.1

Sequence Viewer

Length: 948 bp
ATGGGCCGCCGCCTGGAGCCCGAGCAGATCGACCCCAACGGCCCGCCGTTCAAGCATCACTACACCGCCCGCCTGCCGCCCGAGCAGTACGGCCCCGCCCCCCGGCAGGGATACGCCCTCAGCGGCAAGATCATGCTCAGCGCCATCGTCATCCTCTTTTTCGTCGTCATCCTCATGGTCTGCCTCCACCTCTACGCCCGCTGGTACCTTCTTCACGCCCGCCGCCGCCGTCTCCGCCGCAACCACAGAAACCGCCGCACCCACATCGTCTTTCACGAGGACGCCGCTGCCCTATCCGCCGCCCCCATGCGTGGCCTCGACGCGTCCGTCCTCAACTCCCTCCCCGTATTTGTTTATTCGTCGAAATCGGATCAGACGGCGTTGTTTCAGCAGCAGCCGATTTTGGAGTGCGCCGTCTGCTTGTCGGAATTCGAGGACGACGAAACGGGGCGTTTGCTTCCGAAGTGTAAGCACAGCTTCCACATCGAGTGTATTGATATGTGGTTCCATTCTCACTCCACGTGTCCCCTTTGCCGGGCCCCCGTGGAACTGAGCCCGGAGTCTGAAACCCGGCCCGACGTGCTTCTTAGTGTCTGCGAACCTGAAGGAGGCGAACCGGGTCCGAGCTCCGATTTGTGCTCGGAGTGTTGCAATTACGAGACGACGTCGTCAGGGGCGTGGAGAAAGCCGTCGAATATCGTGGTTCCGAGAAGGAACGAGAGTTTCGGGAGGGGGGAGGACTCCGGACGCGGCGAATCACCTGCAGGTCAGTCTTTTAGGTCGCCGATGAGTCGGATGTTGTCGTTTAGGAGAATACTAAGCCGGGAAAGACGAAACGGCGGCGTTTCACCTTCGGGAGTAAACGCGGGGAGTTGCAGTTCGGTGGCCGAGTCGGGTATCGAACTCGGTGGCCGACAAGGGACCACCGAGTGCACTCGGAGGGAGTAA

Protein Analysis

316

Amino Acids

35.16

Weight (kDa)

8.43

Isoelectric Point (pI)

86.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 136 - 179 9.6e-13 Ring finger domain
zf-RING_11 PF17123 136 - 165 1.3e-09 RING-like zinc finger
zf-rbx1 PF12678 136 - 179 4.6e-08 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 136 - 178 4.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 137 - 178 1.8e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 769
AasI GACNNNNNNGTC 2 cut(s) 326, 667
AatII GACGTC 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 755, 769
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AccII CGCG 3 cut(s) 323, 750, 866
AccIII TCCGGA 1 cut(s) 743
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 2 cut(s) 885, 910
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 624
AcvI CACGTG 1 cut(s) 522
AcyI GRCGYC 2 cut(s) 282, 665
AdeI CACNNNGTG 1 cut(s) 930
AfaI GTAC 2 cut(s) 89, 206
AfiI CCNNNNNNNGG 8 cut(s) 13, 102, 106, 107, 311, 534, 535, 608
AflIII ACRYGT 2 cut(s) 321, 521
AgsI TTSAA 1 cut(s) 52
AjiI CACGTC 1 cut(s) 580
AjnI CCWGG 1 cut(s) 12
AloI GAACNNNNNNTCC 2 cut(s) 862, 894
AluBI AGCT 2 cut(s) 477, 627
AluI AGCT 2 cut(s) 477, 627
Alw21I GWGCWC 3 cut(s) 629, 641, 935
Alw26I GTCTC 2 cut(s) 236, 653
Alw44I GTGCAC 1 cut(s) 931
AlwI GGATC 1 cut(s) 378
Ama87I CYCGRG 2 cut(s) 20, 80
Aor13HI TCCGGA 1 cut(s) 743
AoxI GGCC 8 cut(s) 4, 40, 91, 313, 537, 572, 885, 910
ApaI GGGCCC 1 cut(s) 541
ApaLI GTGCAC 1 cut(s) 931
ApeKI GCWGC 3 cut(s) 287, 391, 394
ApoI RAATTY 1 cut(s) 428
Asp718I GGTACC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 143, 413
AspS9I GGNCC 8 cut(s) 4, 41, 92, 537, 538, 573, 620, 921
AsuC2I CCSGG 6 cut(s) 103, 536, 557, 571, 618, 824
AsuHPI GGTGA 2 cut(s) 750, 840
AvaI CYCGRG 2 cut(s) 20, 80
AvaII GGWCC 2 cut(s) 620, 921
BaeGI GKGCMC 2 cut(s) 541, 935
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 4 cut(s) 21, 541, 557, 629
BauI CACGAG 1 cut(s) 275
BbrPI CACGTG 1 cut(s) 522
Bbv12I GWGCWC 3 cut(s) 629, 641, 935
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 274, 403, 406
BccI CCATC 1 cut(s) 152
BceAI ACGGC 8 cut(s) 31, 55, 106, 213, 393, 398, 673, 853
BcgI CGANNNNNNTGC 4 cut(s) 247, 281, 743, 777
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 6 cut(s) 103, 536, 557, 571, 618, 824
BcoDI GTCTC 2 cut(s) 236, 653
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 2 cut(s) 755, 769
BfuI GTATCC 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 137
Bme1390I CCNGG 7 cut(s) 14, 103, 536, 557, 571, 618, 824
Bme18I GGWCC 2 cut(s) 620, 921
BmeT110I CYCGRG 2 cut(s) 20, 80
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 8 cut(s) 4, 41, 92, 537, 538, 573, 620, 921
BmiI GGNNCC 9 cut(s) 18, 94, 206, 506, 539, 540, 621, 705, 922
BmrFI CCNGG 7 cut(s) 14, 103, 536, 557, 571, 618, 824
BmsI GCATC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 137
BpuMI CCSGG 6 cut(s) 103, 536, 557, 571, 618, 824
BsaAI YACGTR 1 cut(s) 522
BsaHI GRCGYC 2 cut(s) 282, 665
BsaJI CCNNGG 2 cut(s) 101, 543
BsaWI WCCGGW 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 8 cut(s) 13, 102, 106, 107, 311, 534, 535, 608
BseAI TCCGGA 1 cut(s) 743
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 101, 543
BseGI GGATG 3 cut(s) 150, 168, 801
BseLI CCNNNNNNNGG 8 cut(s) 13, 102, 106, 107, 311, 534, 535, 608
BseMII CTCAG 3 cut(s) 133, 151, 542
BseSI GKGCMC 2 cut(s) 541, 935
BseXI GCAGC 3 cut(s) 274, 403, 406
Bsh1236I CGCG 3 cut(s) 323, 750, 866
BshFI GGCC 8 cut(s) 6, 42, 93, 315, 539, 574, 887, 912
BshNI GGYRCC 1 cut(s) 204
BsiHKAI GWGCWC 3 cut(s) 629, 641, 935
BsiHKCI CYCGRG 2 cut(s) 20, 80
BsiSI CCGG 7 cut(s) 103, 535, 557, 571, 617, 744, 823
BslFI GGGAC 2 cut(s) 510, 934
BslI CCNNNNNNNGG 8 cut(s) 13, 102, 106, 107, 311, 534, 535, 608
BsmAI GTCTC 2 cut(s) 236, 653
BsmBI CGTCTC 2 cut(s) 236, 653
BsmFI GGGAC 2 cut(s) 510, 934
BsnI GGCC 8 cut(s) 6, 42, 93, 315, 539, 574, 887, 912
BsoBI CYCGRG 2 cut(s) 20, 80
Bsp120I GGGCCC 1 cut(s) 537
Bsp1286I GDGCHC 6 cut(s) 21, 541, 557, 629, 641, 935
Bsp13I TCCGGA 1 cut(s) 743
Bsp143I GATC 3 cut(s) 27, 129, 370
Bsp1720I GCTNAGC 1 cut(s) 137
BspANI GGCC 8 cut(s) 6, 42, 93, 315, 539, 574, 887, 912
BspCNI CTCAG 3 cut(s) 132, 150, 543
BspEI TCCGGA 1 cut(s) 743
BspFNI CGCG 3 cut(s) 323, 750, 866
BspLI GGNNCC 9 cut(s) 18, 94, 206, 506, 539, 540, 621, 705, 922
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 2 cut(s) 755, 769
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 101, 543
BssMI GATC 3 cut(s) 27, 129, 370
BssNI GRCGYC 2 cut(s) 282, 665
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 14
BstACI GRCGYC 2 cut(s) 282, 665
BstBAI YACGTR 1 cut(s) 522
BstC8I GCNNGC 5 cut(s) 44, 70, 74, 199, 220
BstDEI CTNAG 5 cut(s) 119, 137, 551, 587, 818
BstDSI CCRYGG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 150, 168, 801
BstFNI CGCG 3 cut(s) 323, 750, 866
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 413
BstKTI GATC 3 cut(s) 30, 132, 373
BstMAI GTCTC 2 cut(s) 236, 653
BstMBI GATC 3 cut(s) 27, 129, 370
BstMWI GCNNNNNNNGC 6 cut(s) 52, 82, 234, 296, 417, 580
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 7 cut(s) 12, 101, 534, 555, 569, 616, 822
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 2 cut(s) 541, 935
BstUI CGCG 3 cut(s) 323, 750, 866
BstV1I GCAGC 3 cut(s) 274, 403, 406
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 8 cut(s) 6, 42, 93, 315, 539, 574, 887, 912
BtgI CCRYGG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 150, 168, 801
BveI ACCTGC 2 cut(s) 755, 769
Cac8I GCNNGC 5 cut(s) 44, 70, 74, 199, 220
CfoI GCGC 2 cut(s) 143, 413
Cfr13I GGNCC 8 cut(s) 4, 41, 92, 537, 538, 573, 620, 921
CseI GACGC 4 cut(s) 290, 312, 329, 756
Csp6I GTAC 2 cut(s) 88, 205
CviAII CATG 3 cut(s) 133, 175, 307
CviQI GTAC 2 cut(s) 88, 205
DdeI CTNAG 5 cut(s) 119, 137, 551, 587, 818
DpnI GATC 3 cut(s) 29, 131, 372
DpnII GATC 3 cut(s) 27, 129, 370
DraIII CACNNNGTG 1 cut(s) 930
DrdI GACNNNNNNGTC 2 cut(s) 326, 667
DseDI GACNNNNNNGTC 2 cut(s) 326, 667
EaeI YGGCCR 2 cut(s) 885, 910
EciI GGCGGA 2 cut(s) 224, 286
Ecl136II GAGCTC 1 cut(s) 627
Eco24I GRGCYC 4 cut(s) 21, 541, 557, 629
Eco47I GGWCC 2 cut(s) 620, 921
Eco53kI GAGCTC 1 cut(s) 627
Eco57I CTGAAG 1 cut(s) 624
Eco72I CACGTG 1 cut(s) 522
Eco88I CYCGRG 2 cut(s) 20, 80
EcoICRI GAGCTC 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 4 cut(s) 21, 541, 557, 629
Esp3I CGTCTC 2 cut(s) 236, 653
FaeI CATG 3 cut(s) 136, 178, 310
FaiI YATR 4 cut(s) 134, 176, 308, 500
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 2 cut(s) 510, 934
FatI CATG 3 cut(s) 132, 174, 306
FauI CCCGC 6 cut(s) 51, 77, 103, 206, 227, 859
FokI GGATG 3 cut(s) 137, 155, 808
FriOI GRGCYC 4 cut(s) 21, 541, 557, 629
GlaI GCGC 2 cut(s) 142, 412
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 8 cut(s) 6, 42, 93, 315, 539, 574, 887, 912
HapII CCGG 7 cut(s) 103, 535, 557, 571, 617, 744, 823
HgaI GACGC 4 cut(s) 290, 312, 329, 756
HhaI GCGC 2 cut(s) 143, 413
Hin1I GRCGYC 2 cut(s) 282, 665
Hin1II CATG 3 cut(s) 136, 178, 310
Hin6I GCGC 2 cut(s) 141, 411
HinP1I GCGC 2 cut(s) 141, 411
HinfI GANTC 5 cut(s) 560, 740, 755, 790, 890
HpaII CCGG 7 cut(s) 103, 535, 557, 571, 617, 744, 823
HphI GGTGA 2 cut(s) 750, 840
Hpy166II GTNNAC 2 cut(s) 862, 933
Hpy188III TCNNGA 4 cut(s) 275, 727, 744, 855
Hpy8I GTNNAC 2 cut(s) 862, 933
Hpy99I CGWCG 8 cut(s) 167, 323, 364, 443, 581, 667, 670, 694
HpyAV CCTTC 4 cut(s) 218, 599, 705, 861
HpyCH4IV ACGT 3 cut(s) 521, 579, 665
HpyCH4V TGCA 4 cut(s) 651, 764, 876, 933
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 82, 234, 296, 417, 580
HpyF3I CTNAG 5 cut(s) 119, 137, 551, 587, 818
HpySE526I ACGT 3 cut(s) 521, 579, 665
Hsp92I GRCGYC 2 cut(s) 282, 665
Hsp92II CATG 3 cut(s) 136, 178, 310
HspAI GCGC 2 cut(s) 141, 411
Kpn2I TCCGGA 1 cut(s) 743
KpnI GGTACC 1 cut(s) 208
Kzo9I GATC 3 cut(s) 27, 129, 370
LmnI GCTCC 2 cut(s) 16, 632
Lsp1109I GCAGC 3 cut(s) 274, 403, 406
LweI GCATC 1 cut(s) 64
MaeII ACGT 3 cut(s) 521, 579, 665
MalI GATC 3 cut(s) 29, 131, 372
MboI GATC 3 cut(s) 27, 129, 370
MboII GAAGA 1 cut(s) 203
MhlI GDGCHC 6 cut(s) 21, 541, 557, 629, 641, 935
MluCI AATT 2 cut(s) 428, 652
MluI ACGCGT 1 cut(s) 321
MlyI GAGTC 4 cut(s) 569, 734, 799, 899
MmeI TCCRAC 2 cut(s) 405, 773
MroI TCCGGA 1 cut(s) 743
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 3 cut(s) 123, 201, 287
MspI CCGG 7 cut(s) 103, 535, 557, 571, 617, 744, 823
MspR9I CCNGG 7 cut(s) 14, 103, 536, 557, 571, 618, 824
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 3 cut(s) 323, 750, 866
MwoI GCNNNNNNNGC 6 cut(s) 52, 82, 234, 296, 417, 580
NciI CCSGG 6 cut(s) 103, 536, 557, 571, 618, 824
NdeII GATC 3 cut(s) 27, 129, 370
NlaIII CATG 3 cut(s) 136, 178, 310
NlaIV GGNNCC 9 cut(s) 18, 94, 206, 506, 539, 540, 621, 705, 922
NmeAIII GCCGAG 1 cut(s) 913
PaqCI CACCTGC 1 cut(s) 769
PcsI WCGNNNNNNNCGW 4 cut(s) 273, 324, 438, 674
PfeI GAWTC 1 cut(s) 755
PflFI GACNNNGTC 2 cut(s) 664, 667
PleI GAGTC 4 cut(s) 568, 734, 798, 898
PmaCI CACGTG 1 cut(s) 522
PmlI CACGTG 1 cut(s) 522
PpsI GAGTC 4 cut(s) 568, 734, 798, 898
Ppu21I YACGTR 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 12
PspCI CACGTG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 9 cut(s) 18, 94, 206, 506, 539, 540, 621, 705, 922
PspOMI GGGCCC 1 cut(s) 537
PspPI GGNCC 8 cut(s) 4, 41, 92, 537, 538, 573, 620, 921
PstI CTGCAG 1 cut(s) 766
PsyI GACNNNGTC 2 cut(s) 664, 667
RsaI GTAC 2 cut(s) 89, 206
RsaNI GTAC 2 cut(s) 88, 205
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 629
Sau3AI GATC 3 cut(s) 27, 129, 370
Sau96I GGNCC 8 cut(s) 4, 41, 92, 537, 538, 573, 620, 921
SbfI CCTGCAGG 1 cut(s) 766
SchI GAGTC 4 cut(s) 569, 734, 799, 899
ScrFI CCNGG 7 cut(s) 14, 103, 536, 557, 571, 618, 824
SdaI CCTGCAGG 1 cut(s) 766
SduI GDGCHC 6 cut(s) 21, 541, 557, 629, 641, 935
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 2 cut(s) 620, 921
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse8387I CCTGCAGG 1 cut(s) 766
Sse9I AATT 2 cut(s) 428, 652
SstI GAGCTC 1 cut(s) 629
StyD4I CCNGG 7 cut(s) 12, 101, 534, 555, 569, 616, 822
TaiI ACGT 3 cut(s) 524, 582, 668
TaqI TCGA 7 cut(s) 30, 318, 362, 432, 486, 692, 900
TasI AATT 2 cut(s) 428, 652
TfiI GAWTC 1 cut(s) 755
TseI GCWGC 3 cut(s) 287, 391, 394
TspGWI ACGGA 1 cut(s) 316
Tth111I GACNNNGTC 2 cut(s) 664, 667
VneI GTGCAC 1 cut(s) 931
VpaK11BI GGWCC 2 cut(s) 620, 921
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 1 cut(s) 428
ZraI GACGTC 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.