Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

22490634 .. 22492631

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCTAGTATCATAAACCGACATGGGGAAGGGAACACAAACGAAGACACATTCGGGCCGGAGCCCTACAAGGGCTACGCGCTGAGCGGCAAGATCATGCTCAGCGCCATAGTCGTCCTGTTTTTCGTTGTCATTCTAATGGTGTGTCTCCATCTCTACGCGCGGTGGTATCTTCTCCGTGCGCGTCGCCGCAACCTCCGCCGTAACCGCCGCAGCCGCCGCACGCATATGTTGTTCCACGACGAAAACGCGGCCGGGGTCTCGGCCGCCACGCGCGGCCTCGACGAGTCGGTTTTAAAGTCGCTGCCGGTGTTCGTGTACGACTCGAAGACCCACCCGGAGGCGGTTCTGGAGTGCGCCGTGTGTTTGTCGGAGTTTGAGGAGAACGAAACGGGTCGGGTTCTGCCGAAATGTAAGCACAGCTTCCATATCGAGTGTATTGATATGTGGTTTCATTCCCACTCCACGTGTCCGCTCTGTCGGTGCGCCGTGGAGCCCGGACCCGAGTCCGATAACCCGGGCGACGTGGTGTTGAATGTGTGCGAACCGGAGGTTAACGAACCGGGTTCGAGCTCCGGGTTGTGCTCCGAGTGTTCCGGGTCGAGGTCGTTGAGGCAGACGTCGTCGTTTGGGCCGAGAAGGAAACCGATGGATATTGCGGTGCCGAGTCGGCACGAGAGCTTTGGGAGGTCGGAGGCGGAGTCGCCGTCGGGTCAGGCGTTCCGATCGCCGATGAGCCGGATGCTTTCGTTTAAACGGATTCTGAGCAGAGACAGACGAAACGGCGGCGTTTCGCCATCCGGGAACGCGAGTTGTAGCTCGGTCGCCGAGTTGGATATTGAGCGAGGGCGAGAAGGGGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

289

Amino Acids

31.99

Weight (kDa)

7.99

Isoelectric Point (pI)

78.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 161	6.9e-13	Ring finger domain
zf-RING_11	PF17123	118 - 147	4.3e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	118 - 160	3e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	119 - 161	1e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	119 - 160	2.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	623
AccB1I	GGYRCC	1 cut(s)	661
AccBSI	CCGCTC	2 cut(s)	87, 475
AccII	CGCG	8 cut(s)	80, 161, 163, 184, 251, 274, 276, 809
AcoI	YGGCCR	2 cut(s)	252, 264
AcvI	CACGTG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	5 cut(s)	25, 71, 340, 343, 603
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	526
AluBI	AGCT	4 cut(s)	423, 573, 681, 819
AluI	AGCT	4 cut(s)	423, 573, 681, 819
Alw21I	GWGCWC	2 cut(s)	575, 587
Alw26I	GTCTC	3 cut(s)	152, 265, 765
Ama87I	CYCGRG	2 cut(s)	503, 517
AoxI	GGCC	6 cut(s)	56, 252, 264, 277, 632, 858
ApeKI	GCWGC	2 cut(s)	213, 304
AspLEI	GCGC	7 cut(s)	82, 107, 163, 184, 276, 359, 488
AspS9I	GGNCC	4 cut(s)	56, 500, 632, 858
AsuC2I	CCSGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
AvaI	CYCGRG	2 cut(s)	503, 517
AvaII	GGWCC	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	3 cut(s)	66, 498, 575
BauI	CACGAG	1 cut(s)	674
BbrPI	CACGTG	1 cut(s)	468
BbsI	GAAGAC	2 cut(s)	51, 335
Bbv12I	GWGCWC	2 cut(s)	575, 587
BbvI	GCAGC	2 cut(s)	225, 291
BccI	CCATC	3 cut(s)	159, 643, 805
BceAI	ACGGC	5 cut(s)	186, 344, 473, 691, 799
BcnI	CCSGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
BcoDI	GTCTC	3 cut(s)	152, 265, 765
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	670
BlpI	GCTNAGC	2 cut(s)	83, 101
Bme1390I	CCNGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	2 cut(s)	503, 517
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	4 cut(s)	56, 500, 632, 858
BmiI	GGNNCC	5 cut(s)	63, 495, 502, 663, 859
BmrFI	CCNGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
BmsI	GCATC	1 cut(s)	732
BoxI	GACNNNNGTC	1 cut(s)	505
BpiI	GAAGAC	2 cut(s)	51, 335
BpmI	CTGGAG	1 cut(s)	371
Bpu1102I	GCTNAGC	2 cut(s)	83, 101
BpuMI	CCSGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
BsaAI	YACGTR	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	255, 489, 517
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	686, 692, 716, 722
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 71, 340, 343, 603
Bse118I	RCCGGY	1 cut(s)	307
BseDI	CCNNGG	3 cut(s)	255, 489, 517
BseGI	GGATG	2 cut(s)	747, 797
BseLI	CCNNNNNNNGG	5 cut(s)	25, 71, 340, 343, 603
BseMII	CTCAG	3 cut(s)	74, 115, 755
BseRI	GAGGAG	1 cut(s)	395
BseX3I	CGGCCG	2 cut(s)	252, 264
BseXI	GCAGC	2 cut(s)	225, 291
Bsh1236I	CGCG	8 cut(s)	80, 161, 163, 184, 251, 274, 276, 809
Bsh1285I	CGRYCG	4 cut(s)	255, 267, 728, 825
BshFI	GGCC	6 cut(s)	58, 254, 266, 279, 634, 860
BshNI	GGYRCC	1 cut(s)	661
BsiEI	CGRYCG	4 cut(s)	255, 267, 728, 825
BsiHKAI	GWGCWC	2 cut(s)	575, 587
BsiHKCI	CYCGRG	2 cut(s)	503, 517
BslI	CCNNNNNNNGG	5 cut(s)	25, 71, 340, 343, 603
BsmAI	GTCTC	3 cut(s)	152, 265, 765
BsnI	GGCC	6 cut(s)	58, 254, 266, 279, 634, 860
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	2 cut(s)	503, 517
Bsp1286I	GDGCHC	4 cut(s)	66, 498, 575, 587
Bsp143I	GATC	2 cut(s)	93, 725
Bsp1720I	GCTNAGC	2 cut(s)	83, 101
BspANI	GGCC	6 cut(s)	58, 254, 266, 279, 634, 860
BspCNI	CTCAG	3 cut(s)	75, 114, 756
BspFNI	CGCG	8 cut(s)	80, 161, 163, 184, 251, 274, 276, 809
BspLI	GGNNCC	5 cut(s)	63, 495, 502, 663, 859
BspT107I	GGYRCC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	265
BsrBI	CCGCTC	2 cut(s)	87, 475
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	255, 489, 517
BssMI	GATC	2 cut(s)	93, 725
BssNI	GRCGYC	1 cut(s)	620
BssSI	CACGAG	1 cut(s)	674
Bst2BI	CACGAG	1 cut(s)	674
BstACI	GRCGYC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	83, 101, 764
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	747, 797
BstFNI	CGCG	8 cut(s)	80, 161, 163, 184, 251, 274, 276, 809
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	7 cut(s)	82, 107, 163, 184, 276, 359, 488
BstKTI	GATC	2 cut(s)	96, 728
BstMAI	GTCTC	3 cut(s)	152, 265, 765
BstMBI	GATC	2 cut(s)	93, 725
BstMCI	CGRYCG	4 cut(s)	255, 267, 728, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 207, 216, 219, 670
BstPAI	GACNNNNGTC	1 cut(s)	505
BstSCI	CCNGG	9 cut(s)	254, 336, 496, 516, 517, 562, 575, 596, 800
BstUI	CGCG	8 cut(s)	80, 161, 163, 184, 251, 274, 276, 809
BstV1I	GCAGC	2 cut(s)	225, 291
BstV2I	GAAGAC	2 cut(s)	51, 335
BstZI	CGGCCG	2 cut(s)	252, 264
BsuRI	GGCC	6 cut(s)	58, 254, 266, 279, 634, 860
BtgI	CCRYGG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	747, 797
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	7 cut(s)	82, 107, 163, 184, 276, 359, 488
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	4 cut(s)	56, 500, 632, 858
Cfr9I	CCCGGG	1 cut(s)	517
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	23, 97
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	3 cut(s)	83, 101, 764
DpnI	GATC	2 cut(s)	95, 727
DpnII	GATC	2 cut(s)	93, 725
DraI	TTTAAA	2 cut(s)	297, 754
EaeI	YGGCCR	2 cut(s)	252, 264
EagI	CGGCCG	2 cut(s)	252, 264
EciI	GGCGGA	2 cut(s)	188, 713
Ecl136II	GAGCTC	1 cut(s)	573
EclXI	CGGCCG	2 cut(s)	252, 264
Eco24I	GRGCYC	3 cut(s)	66, 498, 575
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	500
Eco52I	CGGCCG	2 cut(s)	252, 264
Eco53kI	GAGCTC	1 cut(s)	573
Eco72I	CACGTG	1 cut(s)	468
Eco88I	CYCGRG	2 cut(s)	503, 517
EcoICRI	GAGCTC	1 cut(s)	573
EcoT38I	GRGCYC	3 cut(s)	66, 498, 575
FaeI	CATG	2 cut(s)	26, 100
FaiI	YATR	8 cut(s)	14, 24, 98, 110, 228, 230, 429, 446
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	2 cut(s)	22, 96
FauNDI	CATATG	1 cut(s)	228
FokI	GGATG	2 cut(s)	754, 784
FriOI	GRGCYC	3 cut(s)	66, 498, 575
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	7 cut(s)	81, 106, 162, 183, 275, 358, 487
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	6 cut(s)	58, 254, 266, 279, 634, 860
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	7 cut(s)	82, 107, 163, 184, 276, 359, 488
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	2 cut(s)	26, 100
Hin6I	GCGC	7 cut(s)	80, 105, 161, 182, 274, 357, 486
HinP1I	GCGC	7 cut(s)	80, 105, 161, 182, 274, 357, 486
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	6 cut(s)	287, 323, 506, 667, 701, 760
HpaI	GTTAAC	1 cut(s)	556
Hpy166II	GTNNAC	2 cut(s)	319, 556
Hpy188I	TCNGA	6 cut(s)	373, 511, 589, 694, 725, 765
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	2 cut(s)	319, 556
Hpy99I	CGWCG	7 cut(s)	189, 245, 287, 527, 625, 628, 712
HpyAV	CCTTC	3 cut(s)	23, 633, 848
HpyCH4IV	ACGT	3 cut(s)	467, 525, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 207, 216, 219, 670
HpyF3I	CTNAG	3 cut(s)	83, 101, 764
HpySE526I	ACGT	3 cut(s)	467, 525, 620
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	2 cut(s)	26, 100
HspAI	GCGC	7 cut(s)	80, 105, 161, 182, 274, 357, 486
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	93, 725
LmnI	GCTCC	4 cut(s)	61, 493, 578, 590
Lsp1109I	GCAGC	2 cut(s)	225, 291
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	3 cut(s)	467, 525, 620
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	95, 727
MbiI	CCGCTC	2 cut(s)	87, 475
MboI	GATC	2 cut(s)	93, 725
MboII	GAAGA	3 cut(s)	56, 164, 340
MhlI	GDGCHC	4 cut(s)	66, 498, 575, 587
MlyI	GAGTC	5 cut(s)	296, 317, 515, 676, 710
MmeI	TCCRAC	3 cut(s)	351, 672, 813
MseI	TTAA	3 cut(s)	296, 555, 753
MslI	CAYNNNNRTG	2 cut(s)	137, 227
MspR9I	CCNGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
MssI	GTTTAAAC	1 cut(s)	754
MvnI	CGCG	8 cut(s)	80, 161, 163, 184, 251, 274, 276, 809
MwoI	GCNNNNNNNGC	5 cut(s)	198, 207, 216, 219, 670
NciI	CCSGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	2 cut(s)	93, 725
NlaIII	CATG	2 cut(s)	26, 100
NlaIV	GGNNCC	5 cut(s)	63, 495, 502, 663, 859
NmeAIII	GCCGAG	4 cut(s)	242, 660, 690, 853
PcsI	WCGNNNNNNNCGW	2 cut(s)	632, 716
PfeI	GAWTC	1 cut(s)	760
PflFI	GACNNNGTC	1 cut(s)	622
PfoI	TCCNGGA	1 cut(s)	800
Ple19I	CGATCG	1 cut(s)	728
PleI	GAGTC	5 cut(s)	295, 317, 514, 675, 709
PmaCI	CACGTG	1 cut(s)	468
PmeI	GTTTAAAC	1 cut(s)	754
PmlI	CACGTG	1 cut(s)	468
PpsI	GAGTC	5 cut(s)	295, 317, 514, 675, 709
Ppu21I	YACGTR	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	575
PspCI	CACGTG	1 cut(s)	468
PspN4I	GGNNCC	5 cut(s)	63, 495, 502, 663, 859
PspPI	GGNCC	4 cut(s)	56, 500, 632, 858
PsyI	GACNNNGTC	1 cut(s)	622
PvuI	CGATCG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	137, 227
SacI	GAGCTC	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	296, 555, 753
Sau3AI	GATC	2 cut(s)	93, 725
Sau96I	GGNCC	4 cut(s)	56, 500, 632, 858
SchI	GAGTC	5 cut(s)	296, 317, 515, 676, 710
ScrFI	CCNGG	9 cut(s)	256, 338, 498, 518, 519, 564, 577, 598, 802
SduI	GDGCHC	4 cut(s)	66, 498, 575, 587
SfaNI	GCATC	1 cut(s)	732
SinI	GGWCC	1 cut(s)	500
SmaI	CCCGGG	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	137, 227
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	575
StyD4I	CCNGG	9 cut(s)	254, 336, 496, 516, 517, 562, 575, 596, 800
TaiI	ACGT	3 cut(s)	470, 528, 623
TaqI	TCGA	5 cut(s)	282, 326, 432, 569, 602
TaqII	GACCGA	1 cut(s)	811
TauI	GCSGC	9 cut(s)	90, 192, 213, 219, 222, 254, 269, 279, 789
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	3 cut(s)	296, 555, 753
Tru9I	TTAA	3 cut(s)	296, 555, 753
TseI	GCWGC	2 cut(s)	213, 304
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	167, 772
TspMI	CCCGGG	1 cut(s)	517
Tth111I	GACNNNGTC	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	500
XmaI	CCCGGG	1 cut(s)	517
XspI	CTAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.