Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Reverse (-)

13038358 .. 13039248

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1165000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGACCGCCGCCCGCACGCCGACCATCTCGACGCCTCCCCGATGCAGCCCTACAACGGCTACGAGCTCAGCGGCAAGATCATGCTCAGCGCCATCGTCATCCTCTTCTTCGTCGTCGTCCTCATGCTCTGCCTCCACCTCTACGCGCGTTGGTACCTCCTCCGCGCCCGCCGCCTCCATGTCCGCCGCAATCGCCGGAACCGCCGCACCCATATTGTCTTTCACGAGGACGCGGCCGCCCTCTCCGCCGTCCCCACCCGCAGCCTTGACGCCTCCACCCTTAATTCCCTCCCTGTATTCGTTTACTCGTCCAAATCGAGTCAAATGGAGCAGTTTCGGCAGCAGCCCATTTTGGAGTGCGCCGTCTGCTTGTCGGAATTCGAGGACGACGAAACGGGGCGTTTGCTTCCCAAGTGTAAGCACAGCTTCCATATCGAGTGTATTGATATGTGGTTCCAATCTCACTCCACGTGTCCCCTCTGCCGGGCACCCGTGGAACCGGGCCCGGAGTCCGAAACCCGGGCCGACGTGGTTCTGAATGTCTGCGAACCGGACGAGCCGGGTCCGAGCTCCTATTTGTGCTCGGAGTGTTGTAATTCCGAGACGGCGTCGTCTGGGGCGCGGAGAAAGCCGTCGAACATCGTGATTCCGAGAAGGAACGAGAGTTTGGGGAAGGGGGACGGCTCGGGATGTGGCGAATCGCCGGCCGGTCAATCATTTAGGTCTCCGATGAGTCGGATGTTGTCGTTTAGGACAATGCTAAGTAGGGAAAAACGGAACGGCGGCGTTTCGCCTTCGGGAGGAAACGGGGGGAGTTCCAGTTCGGTGGCGGGGTCGGATATCGAACTCGGTGGACGACAAGGGACCAGCGAGTGCACTCGGAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

297

Amino Acids

32.76

Weight (kDa)

8.23

Isoelectric Point (pI)

82.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	119 - 162	2.8e-13	Ring finger domain
zf-RING_11	PF17123	119 - 148	1.2e-09	RING-like zinc finger
zf-rbx1	PF12678	119 - 162	1.2e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	119 - 161	9.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	120 - 161	3.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	2 cut(s)	153, 487
AccII	CGCG	5 cut(s)	146, 148, 165, 233, 622
AcoI	YGGCCR	2 cut(s)	234, 705
AcsI	RAATTY	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	471
AcyI	GRCGYC	3 cut(s)	33, 270, 608
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	5 cut(s)	56, 483, 484, 519, 800
AflIII	ACRYGT	1 cut(s)	470
AjiI	CACGTC	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	805, 837
AluBI	AGCT	3 cut(s)	67, 426, 570
AluI	AGCT	3 cut(s)	67, 426, 570
Alw21I	GWGCWC	4 cut(s)	69, 572, 584, 878
Alw26I	GTCTC	2 cut(s)	596, 729
Alw44I	GTGCAC	1 cut(s)	874
Ama87I	CYCGRG	2 cut(s)	519, 685
AoxI	GGCC	4 cut(s)	234, 502, 522, 705
ApaI	GGGCCC	1 cut(s)	506
ApaLI	GTGCAC	1 cut(s)	874
ApeKI	GCWGC	4 cut(s)	46, 261, 340, 343
ApoI	RAATTY	1 cut(s)	377
Asp718I	GGTACC	1 cut(s)	153
AspLEI	GCGC	5 cut(s)	92, 148, 167, 362, 622
AspS9I	GGNCC	6 cut(s)	4, 502, 503, 522, 563, 864
AsuC2I	CCSGG	6 cut(s)	485, 501, 506, 520, 521, 561
AvaI	CYCGRG	2 cut(s)	519, 685
AvaII	GGWCC	3 cut(s)	4, 563, 864
BaeGI	GKGCMC	3 cut(s)	490, 506, 878
BanI	GGYRCC	2 cut(s)	153, 487
BanII	GRGCYC	3 cut(s)	69, 506, 572
BauI	CACGAG	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	471
Bbv12I	GWGCWC	4 cut(s)	69, 572, 584, 878
BbvI	GCAGC	4 cut(s)	58, 273, 352, 355
BccI	CCATC	2 cut(s)	33, 101
BceAI	ACGGC	7 cut(s)	73, 233, 347, 616, 621, 697, 796
BcnI	CCSGG	6 cut(s)	485, 501, 506, 520, 521, 561
BcoDI	GTCTC	2 cut(s)	596, 729
BfoI	RGCGCY	1 cut(s)	93
BlpI	GCTNAGC	2 cut(s)	68, 86
Bme1390I	CCNGG	6 cut(s)	485, 501, 506, 520, 521, 561
Bme18I	GGWCC	3 cut(s)	4, 563, 864
BmeT110I	CYCGRG	2 cut(s)	519, 685
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	6 cut(s)	4, 502, 503, 522, 563, 864
BmiI	GGNNCC	8 cut(s)	155, 200, 455, 489, 498, 504, 564, 865
BmrFI	CCNGG	6 cut(s)	485, 501, 506, 520, 521, 561
BmsI	GCATC	1 cut(s)	33
Bpu1102I	GCTNAGC	2 cut(s)	68, 86
BpuMI	CCSGG	6 cut(s)	485, 501, 506, 520, 521, 561
BsaAI	YACGTR	1 cut(s)	471
BsaHI	GRCGYC	3 cut(s)	33, 270, 608
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	492, 519
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 483, 484, 519, 800
Bse118I	RCCGGY	2 cut(s)	703, 707
Bse1I	ACTGG	1 cut(s)	819
BseDI	CCNNGG	2 cut(s)	492, 519
BseGI	GGATG	3 cut(s)	99, 695, 744
BseLI	CCNNNNNNNGG	5 cut(s)	56, 483, 484, 519, 800
BseMII	CTCAG	2 cut(s)	82, 100
BseNI	ACTGG	1 cut(s)	819
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	3 cut(s)	490, 506, 878
BseX3I	CGGCCG	2 cut(s)	234, 705
BseXI	GCAGC	4 cut(s)	58, 273, 352, 355
Bsh1236I	CGCG	5 cut(s)	146, 148, 165, 233, 622
Bsh1285I	CGRYCG	2 cut(s)	237, 708
BshFI	GGCC	4 cut(s)	236, 504, 524, 707
BshNI	GGYRCC	2 cut(s)	153, 487
BsiEI	CGRYCG	2 cut(s)	237, 708
BsiHKAI	GWGCWC	4 cut(s)	69, 572, 584, 878
BsiHKCI	CYCGRG	2 cut(s)	519, 685
BsiSI	CCGG	9 cut(s)	196, 484, 500, 506, 520, 551, 560, 704, 708
BslFI	GGGAC	4 cut(s)	236, 459, 692, 877
BslI	CCNNNNNNNGG	5 cut(s)	56, 483, 484, 519, 800
BsmAI	GTCTC	2 cut(s)	596, 729
BsmBI	CGTCTC	1 cut(s)	596
BsmFI	GGGAC	4 cut(s)	236, 459, 692, 877
BsnI	GGCC	4 cut(s)	236, 504, 524, 707
Bso31I	GGTCTC	1 cut(s)	729
BsoBI	CYCGRG	2 cut(s)	519, 685
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	6 cut(s)	69, 490, 506, 572, 584, 878
Bsp143I	GATC	1 cut(s)	78
Bsp1720I	GCTNAGC	2 cut(s)	68, 86
BspANI	GGCC	4 cut(s)	236, 504, 524, 707
BspCNI	CTCAG	2 cut(s)	81, 99
BspFNI	CGCG	5 cut(s)	146, 148, 165, 233, 622
BspLI	GGNNCC	8 cut(s)	155, 200, 455, 489, 498, 504, 564, 865
BspT107I	GGYRCC	2 cut(s)	153, 487
BspTNI	GGTCTC	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	703, 707
BsrI	ACTGG	1 cut(s)	819
BssAI	RCCGGY	2 cut(s)	703, 707
BssECI	CCNNGG	2 cut(s)	492, 519
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	3 cut(s)	33, 270, 608
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	3 cut(s)	33, 270, 608
BstBAI	YACGTR	1 cut(s)	471
BstC8I	GCNNGC	4 cut(s)	14, 18, 169, 705
BstDEI	CTNAG	3 cut(s)	68, 86, 761
BstDSI	CCRYGG	1 cut(s)	492
BstENI	CCTNNNNNAGG	1 cut(s)	798
BstF5I	GGATG	3 cut(s)	99, 695, 744
BstFNI	CGCG	5 cut(s)	146, 148, 165, 233, 622
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	5 cut(s)	92, 148, 167, 362, 622
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	596, 729
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	2 cut(s)	237, 708
BstMWI	GCNNNNNNNGC	7 cut(s)	171, 192, 201, 245, 337, 366, 628
BstSCI	CCNGG	6 cut(s)	483, 499, 504, 518, 519, 559
BstSLI	GKGCMC	3 cut(s)	490, 506, 878
BstUI	CGCG	5 cut(s)	146, 148, 165, 233, 622
BstV1I	GCAGC	4 cut(s)	58, 273, 352, 355
BstXI	CCANNNNNNTGG	1 cut(s)	826
BstZI	CGGCCG	2 cut(s)	234, 705
BsuRI	GGCC	4 cut(s)	236, 504, 524, 707
BtgI	CCRYGG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	99, 695, 744
Cac8I	GCNNGC	4 cut(s)	14, 18, 169, 705
CciNI	GCGGCCGC	1 cut(s)	234
CfoI	GCGC	5 cut(s)	92, 148, 167, 362, 622
Cfr10I	RCCGGY	2 cut(s)	703, 707
Cfr13I	GGNCC	6 cut(s)	4, 502, 503, 522, 563, 864
Cfr9I	CCCGGG	1 cut(s)	519
CseI	GACGC	4 cut(s)	41, 239, 278, 597
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	82, 124, 179
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	3 cut(s)	68, 86, 761
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	2 cut(s)	234, 705
EagI	CGGCCG	2 cut(s)	234, 705
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	2 cut(s)	173, 235
Ecl136II	GAGCTC	2 cut(s)	67, 570
EclXI	CGGCCG	2 cut(s)	234, 705
Eco24I	GRGCYC	3 cut(s)	69, 506, 572
Eco31I	GGTCTC	1 cut(s)	729
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	3 cut(s)	4, 563, 864
Eco52I	CGGCCG	2 cut(s)	234, 705
Eco53kI	GAGCTC	2 cut(s)	67, 570
Eco72I	CACGTG	1 cut(s)	471
Eco88I	CYCGRG	2 cut(s)	519, 685
EcoICRI	GAGCTC	2 cut(s)	67, 570
EcoNI	CCTNNNNNAGG	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	377
EcoRV	GATATC	1 cut(s)	841
EcoT38I	GRGCYC	3 cut(s)	69, 506, 572
Esp3I	CGTCTC	1 cut(s)	596
FaeI	CATG	3 cut(s)	85, 127, 182
FaiI	YATR	6 cut(s)	83, 125, 180, 213, 432, 449
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	4 cut(s)	236, 459, 692, 877
FatI	CATG	3 cut(s)	81, 123, 178
FauI	CCCGC	4 cut(s)	21, 176, 266, 823
FokI	GGATG	3 cut(s)	86, 702, 751
FriOI	GRGCYC	3 cut(s)	69, 506, 572
GlaI	GCGC	5 cut(s)	91, 147, 166, 361, 621
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	4 cut(s)	236, 504, 524, 707
HapII	CCGG	9 cut(s)	196, 484, 500, 506, 520, 551, 560, 704, 708
HgaI	GACGC	4 cut(s)	41, 239, 278, 597
HhaI	GCGC	5 cut(s)	92, 148, 167, 362, 622
Hin1I	GRCGYC	3 cut(s)	33, 270, 608
Hin1II	CATG	3 cut(s)	85, 127, 182
Hin6I	GCGC	5 cut(s)	90, 146, 165, 360, 620
HinP1I	GCGC	5 cut(s)	90, 146, 165, 360, 620
HinfI	GANTC	5 cut(s)	319, 509, 646, 698, 733
HpaII	CCGG	9 cut(s)	196, 484, 500, 506, 520, 551, 560, 704, 708
Hpy166II	GTNNAC	3 cut(s)	304, 854, 876
Hpy188III	TCNNGA	5 cut(s)	29, 224, 643, 687, 798
Hpy8I	GTNNAC	3 cut(s)	304, 854, 876
Hpy99I	CGWCG	7 cut(s)	35, 116, 119, 392, 530, 613, 637
HpyAV	CCTTC	3 cut(s)	648, 667, 804
HpyCH4IV	ACGT	2 cut(s)	470, 528
HpyCH4V	TGCA	2 cut(s)	46, 876
HpyF10VI	GCNNNNNNNGC	7 cut(s)	171, 192, 201, 245, 337, 366, 628
HpyF3I	CTNAG	3 cut(s)	68, 86, 761
HpySE526I	ACGT	2 cut(s)	470, 528
Hsp92I	GRCGYC	3 cut(s)	33, 270, 608
Hsp92II	CATG	3 cut(s)	85, 127, 182
HspAI	GCGC	5 cut(s)	90, 146, 165, 360, 620
KpnI	GGTACC	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	703
KroNI	GCCGGC	1 cut(s)	705
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	328, 575
Lsp1109I	GCAGC	4 cut(s)	58, 273, 352, 355
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	2 cut(s)	470, 528
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	97, 100
MhlI	GDGCHC	6 cut(s)	69, 490, 506, 572, 584, 878
MluCI	AATT	3 cut(s)	283, 377, 595
MlyI	GAGTC	3 cut(s)	328, 518, 742
MmeI	TCCRAC	3 cut(s)	354, 716, 816
MroNI	GCCGGC	1 cut(s)	703
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	9 cut(s)	196, 484, 500, 506, 520, 551, 560, 704, 708
MspR9I	CCNGG	6 cut(s)	485, 501, 506, 520, 521, 561
MvnI	CGCG	5 cut(s)	146, 148, 165, 233, 622
MwoI	GCNNNNNNNGC	7 cut(s)	171, 192, 201, 245, 337, 366, 628
NaeI	GCCGGC	1 cut(s)	705
NciI	CCSGG	6 cut(s)	485, 501, 506, 520, 521, 561
NdeII	GATC	1 cut(s)	78
NgoMIV	GCCGGC	1 cut(s)	703
NlaIII	CATG	3 cut(s)	85, 127, 182
NlaIV	GGNNCC	8 cut(s)	155, 200, 455, 489, 498, 504, 564, 865
NotI	GCGGCCGC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	2 cut(s)	314, 387
PdiI	GCCGGC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	646, 698
PflFI	GACNNNGTC	1 cut(s)	607
PleI	GAGTC	3 cut(s)	327, 517, 741
PmaCI	CACGTG	1 cut(s)	471
PmlI	CACGTG	1 cut(s)	471
PpsI	GAGTC	3 cut(s)	327, 517, 741
Ppu21I	YACGTR	1 cut(s)	471
Psp124BI	GAGCTC	2 cut(s)	69, 572
PspCI	CACGTG	1 cut(s)	471
PspN4I	GGNNCC	8 cut(s)	155, 200, 455, 489, 498, 504, 564, 865
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	6 cut(s)	4, 502, 503, 522, 563, 864
PsyI	GACNNNGTC	1 cut(s)	607
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	2 cut(s)	69, 572
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	6 cut(s)	4, 502, 503, 522, 563, 864
SchI	GAGTC	3 cut(s)	328, 518, 742
ScrFI	CCNGG	6 cut(s)	485, 501, 506, 520, 521, 561
SduI	GDGCHC	6 cut(s)	69, 490, 506, 572, 584, 878
SetI	ASST	8 cut(s)	69, 141, 159, 428, 473, 531, 572, 725
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	3 cut(s)	4, 563, 864
SmaI	CCCGGG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	283, 377, 595
SstI	GAGCTC	2 cut(s)	69, 572
StyD4I	CCNGG	6 cut(s)	483, 499, 504, 518, 519, 559
TaiI	ACGT	2 cut(s)	473, 531
TaqI	TCGA	6 cut(s)	30, 317, 381, 435, 635, 843
TasI	AATT	3 cut(s)	283, 377, 595
TauI	GCSGC	8 cut(s)	12, 75, 174, 189, 207, 236, 239, 786
TfiI	GAWTC	2 cut(s)	646, 698
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	4 cut(s)	46, 261, 340, 343
TspGWI	ACGGA	1 cut(s)	790
TspMI	CCCGGG	1 cut(s)	519
Tth111I	GACNNNGTC	1 cut(s)	607
VneI	GTGCAC	1 cut(s)	874
VpaK11BI	GGWCC	3 cut(s)	4, 563, 864
XagI	CCTNNNNNAGG	1 cut(s)	798
XapI	RAATTY	1 cut(s)	377
XmaI	CCCGGG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.