Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

42089039 .. 42090939

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG251200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCTATTTCCGGCATGTCTGGCTTCAACGAGTTACCCCACCGCCCGGATTTGTCTACATACTCCACTCCCCCGCCGGAGCCCTACAAGGGCTACGAGCTCAGCGGCAAGATTATGCTGAGCGCCATCGTCATCCTCTTCTTCGTCGTTATTCTAATGGTGTGTCTCCACCTCTACGCGCGCTGGTACCTCCTCCGAGCCCGCCGCCGCAACCTCCGCAGAAACCGCCGCAACCGCCGCAACTTGATCTTCCACGAGGACGAGGCCGCCGCCGCCGTCTCGGCCGCCATGCGCGGCCTCGACGAGTCGGTGCTCAAGTCGCTGCCGGTGTTCGTCTACGACTCGAAGACCCACCCGGAGCCGATTCTGGAGTGCGCCGTGTGCTTGTCGGAGTTCGAAGAGAACGAAACGGGTCGGGTTCTCCCGAAATGTAAGCACAGCTTCCATATCGAGTGTATCGACATGTGGTTCCACTCGCACTCCACGTGCCCGCTCTGTCGGTGCGCGGTGGAGCCCCAACCCGAGTCCGAGAACCCGGGAGATGTGGTGTTGAATGTGTGCGAACCCGAGAGTAACGAACCGGGTTCGAGCTCCGGGTTGTGCTCTGAGTGTTCCGGGTCGAGGTCGTTACGGCAGACGTCGTCGTTTGGGCCGAGAAGGAAACCGATGGATATCGCGGTGCCGAGTCGGCACGAGAGCTTTGGGAGGTCGGAGGCGGAGTCGCCGTCGGGTCAGGCGTTTCGGTCGCCGATGAGTCGGATGCTGTCGTTTAAACGGATGCTGAGCAGAGACAAAAGAAACGGCGGCGGTTCGCCTTCCGGGAATGCCAGTTGTAGCTCCGTCGCCGAGTTGGATATTGAGCGAGGACGAGAAGGGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

294

Amino Acids

32.79

Weight (kDa)

7.56

Isoelectric Point (pI)

82.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	124 - 167	7.1e-13	Ring finger domain
zf-RING_11	PF17123	124 - 153	4.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	124 - 166	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	125 - 167	8.7e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	125 - 166	2.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	641
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	186, 679
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	56, 336
AccII	CGCG	5 cut(s)	179, 181, 294, 506, 677
AcoI	YGGCCR	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	46, 89, 621
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	28, 553
AluBI	AGCT	5 cut(s)	100, 441, 591, 699, 837
AluI	AGCT	5 cut(s)	100, 441, 591, 699, 837
Alw21I	GWGCWC	4 cut(s)	102, 315, 593, 605
Alw26I	GTCTC	3 cut(s)	170, 283, 783
Ama87I	CYCGRG	3 cut(s)	521, 535, 566
AoxI	GGCC	4 cut(s)	264, 282, 295, 650
ApeKI	GCWGC	1 cut(s)	322
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	6 cut(s)	125, 181, 183, 294, 377, 506
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
AsuII	TTCGAA	1 cut(s)	396
AvaI	CYCGRG	3 cut(s)	521, 535, 566
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	2 cut(s)	186, 679
BanII	GRGCYC	5 cut(s)	84, 102, 202, 516, 593
BauI	CACGAG	2 cut(s)	254, 692
BbrPI	CACGTG	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	4 cut(s)	102, 315, 593, 605
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	134, 661
BceAI	ACGGC	5 cut(s)	260, 362, 647, 709, 817
BcnI	CCSGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
BcoDI	GTCTC	3 cut(s)	170, 283, 783
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	2 cut(s)	281, 688
BlpI	GCTNAGC	3 cut(s)	101, 119, 782
Bme1390I	CCNGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
BmeT110I	CYCGRG	3 cut(s)	521, 535, 566
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	6 cut(s)	81, 188, 360, 470, 513, 681
BmrFI	CCNGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
BmsI	GCATC	2 cut(s)	750, 768
BpiI	GAAGAC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	389
Bpu1102I	GCTNAGC	3 cut(s)	101, 119, 782
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
BsaAI	YACGTR	1 cut(s)	486
BsaBI	GATNNNNATC	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	638
BsaJI	CCNNGG	1 cut(s)	535
BsaXI	ACNNNNNCTCC	8 cut(s)	464, 494, 531, 561, 704, 710, 734, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 89, 621
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	828
Bse8I	GATNNNNATC	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	132, 765, 783
BseJI	GATNNNNATC	1 cut(s)	671
BseLI	CCNNNNNNNGG	3 cut(s)	46, 89, 621
BseMII	CTCAG	5 cut(s)	110, 115, 597, 773, 870
BseNI	ACTGG	1 cut(s)	828
BsePI	GCGCGC	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	491
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	309
Bsh1236I	CGCG	5 cut(s)	179, 181, 294, 506, 677
Bsh1285I	CGRYCG	2 cut(s)	285, 746
BshFI	GGCC	4 cut(s)	266, 284, 297, 652
BshNI	GGYRCC	2 cut(s)	186, 679
BsiEI	CGRYCG	2 cut(s)	285, 746
BsiHKAI	GWGCWC	4 cut(s)	102, 315, 593, 605
BsiHKCI	CYCGRG	3 cut(s)	521, 535, 566
BslI	CCNNNNNNNGG	3 cut(s)	46, 89, 621
BsmAI	GTCTC	3 cut(s)	170, 283, 783
BsmBI	CGTCTC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	4 cut(s)	266, 284, 297, 652
BsoBI	CYCGRG	3 cut(s)	521, 535, 566
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	8 cut(s)	84, 102, 202, 315, 491, 516, 593, 605
Bsp143I	GATC	1 cut(s)	246
Bsp1720I	GCTNAGC	3 cut(s)	101, 119, 782
BspANI	GGCC	4 cut(s)	266, 284, 297, 652
BspCNI	CTCAG	5 cut(s)	111, 114, 598, 774, 871
BspFNI	CGCG	5 cut(s)	179, 181, 294, 506, 677
BspLI	GGNNCC	6 cut(s)	81, 188, 360, 470, 513, 681
BspT104I	TTCGAA	1 cut(s)	396
BspT107I	GGYRCC	2 cut(s)	186, 679
BsrBI	CCGCTC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	828
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	535
BssHII	GCGCGC	1 cut(s)	179
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	638
BssSI	CACGAG	2 cut(s)	254, 692
Bst2BI	CACGAG	2 cut(s)	254, 692
Bst6I	CTCTTC	2 cut(s)	143, 393
BstACI	GRCGYC	1 cut(s)	638
BstBAI	YACGTR	1 cut(s)	486
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	3 cut(s)	181, 202, 491
BstDEI	CTNAG	5 cut(s)	101, 119, 606, 782, 879
BstF5I	GGATG	3 cut(s)	132, 765, 783
BstFNI	CGCG	5 cut(s)	179, 181, 294, 506, 677
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	6 cut(s)	125, 181, 183, 294, 377, 506
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	3 cut(s)	170, 283, 783
BstMBI	GATC	1 cut(s)	246
BstMCI	CGRYCG	2 cut(s)	285, 746
BstNSI	RCATGY	2 cut(s)	19, 466
BstSCI	CCNGG	8 cut(s)	45, 354, 534, 535, 580, 593, 614, 818
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	5 cut(s)	179, 181, 294, 506, 677
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	353
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	266, 284, 297, 652
BtsCI	GGATG	3 cut(s)	132, 765, 783
Cac8I	GCNNGC	3 cut(s)	181, 202, 491
CfoI	GCGC	6 cut(s)	125, 181, 183, 294, 377, 506
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	650
Cfr9I	CCCGGG	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	16, 289, 463
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	5 cut(s)	101, 119, 606, 782, 879
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraI	TTTAAA	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	143, 393
EarI	CTCTTC	2 cut(s)	143, 393
EciI	GGCGGA	1 cut(s)	731
Ecl136II	GAGCTC	2 cut(s)	100, 591
EclXI	CGGCCG	1 cut(s)	282
Eco24I	GRGCYC	5 cut(s)	84, 102, 202, 516, 593
Eco32I	GATATC	1 cut(s)	673
Eco52I	CGGCCG	1 cut(s)	282
Eco53kI	GAGCTC	2 cut(s)	100, 591
Eco72I	CACGTG	1 cut(s)	486
Eco88I	CYCGRG	3 cut(s)	521, 535, 566
EcoICRI	GAGCTC	2 cut(s)	100, 591
EcoRV	GATATC	1 cut(s)	673
EcoT38I	GRGCYC	5 cut(s)	84, 102, 202, 516, 593
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	3 cut(s)	19, 292, 466
FaiI	YATR	6 cut(s)	17, 61, 116, 290, 447, 464
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	3 cut(s)	15, 288, 462
FauI	CCCGC	3 cut(s)	81, 209, 498
FblI	GTMKAC	2 cut(s)	56, 336
FokI	GGATG	3 cut(s)	119, 772, 790
FriOI	GRGCYC	5 cut(s)	84, 102, 202, 516, 593
GlaI	GCGC	6 cut(s)	124, 180, 182, 293, 376, 505
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	266, 284, 297, 652
HhaI	GCGC	6 cut(s)	125, 181, 183, 294, 377, 506
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	3 cut(s)	19, 292, 466
Hin6I	GCGC	6 cut(s)	123, 179, 181, 292, 375, 504
HinP1I	GCGC	6 cut(s)	123, 179, 181, 292, 375, 504
HinfI	GANTC	7 cut(s)	305, 341, 364, 524, 685, 719, 754
Hpy166II	GTNNAC	2 cut(s)	57, 337
Hpy188I	TCNGA	6 cut(s)	197, 391, 529, 607, 712, 759
Hpy188III	TCNNGA	2 cut(s)	368, 424
Hpy8I	GTNNAC	2 cut(s)	57, 337
Hpy99I	CGWCG	6 cut(s)	149, 305, 643, 646, 730, 845
HpyAV	CCTTC	3 cut(s)	651, 825, 866
HpyCH4IV	ACGT	2 cut(s)	485, 638
HpyF3I	CTNAG	5 cut(s)	101, 119, 606, 782, 879
HpySE526I	ACGT	2 cut(s)	485, 638
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	3 cut(s)	19, 292, 466
HspAI	GCGC	6 cut(s)	123, 179, 181, 292, 375, 504
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	5 cut(s)	79, 358, 511, 596, 842
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	2 cut(s)	750, 768
MaeII	ACGT	2 cut(s)	485, 638
MaeIII	GTNAC	3 cut(s)	33, 572, 627
MalI	GATC	1 cut(s)	248
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	1 cut(s)	246
MboII	GAAGA	5 cut(s)	130, 133, 241, 358, 410
MhlI	GDGCHC	8 cut(s)	84, 102, 202, 315, 491, 516, 593, 605
MlyI	GAGTC	6 cut(s)	314, 335, 533, 694, 728, 763
MmeI	TCCRAC	4 cut(s)	369, 690, 737, 831
MseI	TTAA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	105
MspR9I	CCNGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
MssI	GTTTAAAC	1 cut(s)	772
Mva1269I	GAATGC	1 cut(s)	829
MvnI	CGCG	5 cut(s)	179, 181, 294, 506, 677
NciI	CCSGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	3 cut(s)	19, 292, 466
NlaIV	GGNNCC	6 cut(s)	81, 188, 360, 470, 513, 681
NmeAIII	GCCGAG	4 cut(s)	260, 678, 708, 871
NspI	RCATGY	2 cut(s)	19, 466
NspV	TTCGAA	1 cut(s)	396
PauI	GCGCGC	1 cut(s)	179
PciI	ACATGT	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	5 cut(s)	402, 456, 482, 650, 734
PctI	GAATGC	1 cut(s)	829
PfeI	GAWTC	1 cut(s)	364
PflFI	GACNNNGTC	1 cut(s)	640
PfoI	TCCNGGA	1 cut(s)	818
PleI	GAGTC	6 cut(s)	313, 335, 532, 693, 727, 762
PmaCI	CACGTG	1 cut(s)	486
PmeI	GTTTAAAC	1 cut(s)	772
PmlI	CACGTG	1 cut(s)	486
PpsI	GAGTC	6 cut(s)	313, 335, 532, 693, 727, 762
Ppu21I	YACGTR	1 cut(s)	486
PscI	ACATGT	1 cut(s)	462
Psp124BI	GAGCTC	2 cut(s)	102, 593
PspCI	CACGTG	1 cut(s)	486
PspN4I	GGNNCC	6 cut(s)	81, 188, 360, 470, 513, 681
PspPI	GGNCC	1 cut(s)	650
PsyI	GACNNNGTC	1 cut(s)	640
PteI	GCGCGC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	2 cut(s)	102, 593
SaqAI	TTAA	1 cut(s)	771
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	6 cut(s)	314, 335, 533, 694, 728, 763
ScrFI	CCNGG	8 cut(s)	47, 356, 536, 537, 582, 595, 616, 820
SduI	GDGCHC	8 cut(s)	84, 102, 202, 315, 491, 516, 593, 605
SfaNI	GCATC	2 cut(s)	750, 768
SfuI	TTCGAA	1 cut(s)	396
SmaI	CCCGGG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SstI	GAGCTC	2 cut(s)	102, 593
StyD4I	CCNGG	8 cut(s)	45, 354, 534, 535, 580, 593, 614, 818
TaiI	ACGT	2 cut(s)	488, 641
TaqI	TCGA	7 cut(s)	300, 344, 396, 450, 459, 587, 620
TaqII	GACCGA	1 cut(s)	732
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TseI	GCWGC	1 cut(s)	322
TspGWI	ACGGA	2 cut(s)	790, 829
TspMI	CCCGGG	1 cut(s)	535
Tth111I	GACNNNGTC	1 cut(s)	640
XceI	RCATGY	2 cut(s)	19, 466
XmaI	CCCGGG	1 cut(s)	535
XmiI	GTMKAC	2 cut(s)	56, 336
ZraI	GACGTC	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.