Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

32391496 .. 32401820

Gene Structure 10325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4023 bp

ATGAAGTCTATGCAGCCGCGCCACAACTTCTTACGGGAGACGACGGAGCCTCCGCAGTCGCCAAACCCTAGCTCCGGCAAGCCTAGGGTCCCGCGGAAGCATAAAGCCTCGAAGGAGAACGCGCCTCCGTCTTCAGATCTCAACTATACGGCCTTCGATTCGAAGCCTTCGCCCGCGGCCAAGCTGAAGAGTCCGCTGCCGCCTCGGCCGCCGCCGTCAAATCCTCTCAAACGGAAGCTCGAGATGCTCCCTGAGAACTCCGTCCATGGAGCCTCTGATTCTGGCGTCCAGGTAATCGTGAGAATGCGGCCGCCAAGAAAGGACAGGGATGAAGGAGAGATGATGGTGCAGAAAACTGCTGGTGATTCTTTGTCGATAAATGGACAAACCTTCACATTTGACTCAGTGGCCGACACAGATGCATCACAGCTAGATATTTTCCAGCTTGTAGGAGTACCACTGGTTGAAAATTGTATGGCTGGGTTCAACAGTTCTGTGTTTGCATACGGACAGACTGGAAGTGGAAAGACATACACTATGTGGGGTCCTGCAAATGCATTGTTGGATGAAAATTTATCAAGTGATCAACAAGGCTTAACTCCCCGTGTTCTCGAGCGTCTTTTTGCTCGCATAAATGAGGAGCAAATCAAGCATGCTGACAAACAACTCAAGTATCAGTGCCAGTGTTCTTTTTTAGAGATTTACAACGAACAAATCACAGATCTGTTGGATCCAAATCCAAAAAGTCTTCAGATAAGAGAAGATGTTAAATCAGGTGTCTATGTGGAAAATCTCACAGAGGAATGTGTGCGCACAATCAAAGATGTGACTCAGCTTTTGATAAAGGGGTTGTCAAACAGGAGGACTGGTTCAACTAGTATCAATGCGGACAGTTCTCGCTCACATACTGTTTTTACCTGTGTTGTTGAATCTCGATACAAGAGTGTGGCAGATGGTACAAGCAGCTTTAAAAGGAGTAGAATAAATCTTGTTGATCTAGCTGGATCAGAGCGCCAAAAGTTAACTGGTGCAGCTGGGGAGCGCTTGAAGGAAGCGGGCAATATCAATCGATCACTCTCACAGCTTGGGAATTTGATAAACATCCTTGCTGAAATTTCTCAGACAGGAAAGCAAAGGCATATCCCCTATAGAGATTCCAGGTTGACATTCTTACTTCAGGAGTCTCTTGGGGGGAATGCAAAGTTAGCAATGGTTTGTGCTGTTTCTCCAACACAGAGCTGTAAGAGTGAGACTTTCAGTACATTGAGATTTGCTCAGCGTGCCAAGGCTATCAAGAATAAGGCAGTTGTTAATGAAGTAATGCAGGATGATGTGAATCACTTGCGTGAAGTGATACGACAATTAAGGGATGAACTACAGCGAATCAAAGCAAATGGGAAGAATGCAGTTGATGCAAATGGAGGTCATTCAGCGGCGTGGTTTCGTCAAAGCTTGAATATACTAAAGGCTAGTCTTAACCGTCCAATGATGTCATCTCATATTGATGATGACGGTGATGAGGAGATGGAAATTGATGAGGAAGCTGTTGAGAGGCTATGTGATGAAGTGGCTAACCAATCAGTTGGCTGTTATGCAAGAAACCTATCTAATGTGAGCAATGTAGATACAAGTAAATCTCATTCCGAACTTATGGGTGTTCAAATTGGAAGCTCTGATGTTCCTCAGACCCACACATCTGGAAGTGGTTTTGTCACAGAACAAGGTTCAGATGATACAGATGTTAAAATGGAAGAAGAAATATCTGATGTTCCTCAGAAGCACACATTTGGAAGTGCTTGTATCACAGAACAAGGTCCTGATGATACAAATGTCAAAATGGAAGAAGAAATTTCTGAACAAGAAGAGTCCATGATTGTTGATTCTGTTGCTGACACCCCAGATATTACAAGTTCCTCCATCTGCAATTTGCTAACTGAAGAGTCAGCCAGTAAAAAAGTACACGATGACTCCTCGTGTGAAGCATCTGAACCGGCTGGTGTAGTATCTGAATATCTTTCAGTTGCAGATGAGCCCAATAAATCACAAAATGTTTCAGTAAATTGTGTTTCTCCGAGCCTCATGATAGTTCCATGTGATGTAACCCCAGTCCTAAAATCTCCTACTCCCAGTGTTTCACCTAGGGTGAACACCAGCAGGAAAAGTTTGAGGACCTCATCAATGATGACAGCTTCTCAGAAGGATCTTTTTGATGGCAGTCAATTAAGCCCAAAGGCCATGCACCTATCTGTGGAGAAACCTGAAAAAATACGCTCCTCTATTGATCCATCAACTCAGACATGTAAGAATTTTTCAGCACCAGCTGAACAGTTGGCAGCAAGCATTCGCCATGGCCTTGAAATTATTGGTAGTCAGCGCCATAGTTCAGCTTTGAGGAGATCAGCATTCAGGTTTTCACTGAAACCTTCAGAGTTGAGGCAGATTTTGCCAGTTCCCAAAGTTGATGCTGGTGTGCAAACTGTTGATGAGTTACCACAAGAAGATTCAGTGGACTATATTTGTAATAATTGCAAGAACAGAATGGATCTAGAGGGTAATAATGAACTTTCAAAAATGGAATTAGTACCTGTGGATGCATCAGAATTAGTACCTGTAGATGCATCAGAGCCTGCTGACAAATCCAGGATGCAGGTTCCAAAAGCCGTAGAAAAGGTGTTAGCCGGAGCCATCCGCAGAGAAATGGCATTAGAAGACATATGTGCCAAGAAAACTTCTGAGATAATGCAGCTTAACCGTTTGGTGCAGCAGTACAAGCATGAGAGGGAATGCAATGCTATTATATCCCAGACAAGGGAGGATAAGATTCTTCGCCTTGAGAGCCTTATGGATGGTGTTTTACCCACTGAGGAGTTCATGGAGGAAGAACTAGTGTCCCTCACACATGATTACAAGCTTTTGAAGGAGAAATACGAGAATCATCCAGAGCTTTTGAGGACAAAGATCGAGTTAAAAAGAGTTCAAGATGAGCTGGAAAATTTACGTAACTTTAATGATATGGGTGAAAGAGAGGTGTTGTTGGAAGAGATTCAAGATTTAAGAAGCCAGCTACAGTATTATGTGGACTCCTCATCCACATCATCCCGTACACGAAACTCTGTGCTGCAGTTGACCTATTCCTGTGAGCCAAAGTTGGCCCCTCTTAGTACAATTCAAGAGTCAAATGAGGGAAGCGTTGAGCAGAAATTTGAACAGGAGAGGAAACAGTGGACTGAGGTAGAGAGTACGTGGATTTGTCTTTCTGAGGAATTAAGAACTGAACTTGAGGCTAGCAGATCACTGGTTGAAAAGACAAAGCAGGAATTAGAAACAGAGAAGAAATGTGCTGAAGAGCTCAAGGAAGCAATGCAACGAGCAATGGAGGGGCAGTCGCGAATGTTGGAACAGTATGCAGATTTGGAAGAGAAACATATGGAACTTCTTATAAGGCATAGGAGGATCCGGGATGGAGTGGAAGATGTAAAGAAAGCAGCTGCTAAGGCTGGAGTTAGGGGTGCTGAGTCCAAGTTTATAAATTCTCTCGCTGCAGAAATTACAGCACTGAGATTAGAAAGAGAAAGAGAAAGGAGATATCTGAGGGATGAAAATAAGGGGCTTCAGGCTCAATTACAGGATACTGCTGAAGCTGTACAGGCTGCAGGTGAATTGCTGATACGACTCAAAGAAGCAGATGAGGCTGTTGCTATTGCTCAGAGACAAGCTACAGAGGCCCAGCAAGAAACAAACAAGGCTTACATCAAGATTGAAAAATTGAAGAAAAAACATGAAAAGGAGATAAGCAGTCTTAATGAGCTCCTTGCTCAGTCTCAGTTACCCAAAGAAGCGATCCGACCGGCTTATGATGAAGATTCTCATATCGCAAAATATGACGTAGGTGAACCCCATAGTTTGAGTGATCAGCGGTGGAAAGAGGAATTTGAGCCATTCTACAATGGGGAAGATGGCGAGTTACGAAAACTTGCTGAACCCTCATCATGGTTCTCTGGTTACGACCGATGCAACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

1340

Amino Acids

149.94

Weight (kDa)

5.28

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	96 - 243	5.5e-21	Microtubule binding
Kinesin	PF00225	122 - 431	1.8e-106	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3440, 3527
AarI	CACCTGC	1 cut(s)	3644
Acc16I	TGCGCA	1 cut(s)	812
Acc36I	ACCTGC	2 cut(s)	2638, 3644
AccII	CGCG	5 cut(s)	19, 94, 122, 176, 3388
AclWI	GGATC	9 cut(s)	725, 738, 1012, 2208, 2276, 2550, 3448, 3461, 3835
AcoI	YGGCCR	4 cut(s)	177, 206, 308, 408
AcsI	RAATTY	9 cut(s)	571, 1090, 1113, 1848, 2305, 2992, 3200, 3529, 3929
AcuI	CTGAAG	9 cut(s)	117, 206, 734, 1160, 1956, 2409, 3363, 3596, 3657
AcyI	GRCGYC	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	540
AfeI	AGCGCT	1 cut(s)	1043
AfiI	CCNNNNNNNGG	5 cut(s)	74, 2248, 2808, 2809, 3990
AflIII	ACRYGT	1 cut(s)	2297
AhlI	ACTAGT	2 cut(s)	875, 2884
AjnI	CCWGG	3 cut(s)	288, 1157, 2639
AleI	CACNNNNGTG	1 cut(s)	1344
AloI	GAACNNNNNNTCC	2 cut(s)	853, 885
Alw21I	GWGCWC	2 cut(s)	3351, 3810
Alw26I	GTCTC	5 cut(s)	32, 1188, 1244, 3703, 3825
AlwI	GGATC	9 cut(s)	725, 738, 1012, 2208, 2276, 2550, 3448, 3461, 3835
AlwNI	CAGNNNCTG	1 cut(s)	2627
Ama87I	CYCGRG	2 cut(s)	239, 611
Aor51HI	AGCGCT	1 cut(s)	1043
AoxI	GGCC	9 cut(s)	150, 177, 206, 308, 408, 2232, 2350, 3150, 3723
ApoI	RAATTY	9 cut(s)	571, 1090, 1113, 1848, 2305, 2992, 3200, 3529, 3929
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
Asp700I	GAANNNNTTC	1 cut(s)	3042
AspA2I	CCTAGG	2 cut(s)	83, 2138
AspLEI	GCGC	6 cut(s)	21, 124, 813, 1014, 1044, 2376
AspS9I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3151, 3724
AsuC2I	CCSGG	1 cut(s)	3458
AsuHPI	GGTGA	7 cut(s)	374, 1526, 2127, 2155, 3029, 3668, 3902
AsuII	TTCGAA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	3284
AvaI	CYCGRG	2 cut(s)	239, 611
AvaII	GGWCC	4 cut(s)	88, 545, 1814, 2169
AvrII	CCTAGG	2 cut(s)	83, 2138
BaeI	ACNNNNGTAYC	8 cut(s)	656, 689, 928, 961, 1725, 1758, 1815, 1848
BamHI	GGATCC	2 cut(s)	730, 3453
BanII	GRGCYC	3 cut(s)	2034, 3351, 3810
BarI	GAAGNNNNNNTAC	2 cut(s)	2909, 2941
BauI	CACGAG	1 cut(s)	1972
BbsI	GAAGAC	3 cut(s)	123, 740, 2715
Bbv12I	GWGCWC	2 cut(s)	3351, 3810
BceAI	ACGGC	3 cut(s)	165, 199, 2645
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	290, 1159, 2641
BciVI	GTATCC	1 cut(s)	3622
BclI	TGATCA	2 cut(s)	583, 3910
BcnI	CCSGG	1 cut(s)	3458
BcoDI	GTCTC	5 cut(s)	32, 1188, 1244, 3703, 3825
BcuI	ACTAGT	2 cut(s)	875, 2884
BfmI	CTRYAG	8 cut(s)	1147, 1376, 2610, 3065, 3119, 3540, 3651, 3717
BfoI	RGCGCY	3 cut(s)	1015, 1045, 2377
BfuAI	ACCTGC	2 cut(s)	2638, 3644
BfuI	GTATCC	1 cut(s)	3622
BglI	GCCNNNNNGGC	1 cut(s)	205
BglII	AGATCT	2 cut(s)	136, 721
BlnI	CCTAGG	2 cut(s)	83, 2138
BlpI	GCTNAGC	1 cut(s)	1275
Bme1390I	CCNGG	4 cut(s)	290, 1159, 2641, 3458
Bme18I	GGWCC	4 cut(s)	88, 545, 1814, 2169
BmeT110I	CYCGRG	2 cut(s)	239, 611
BmgT120I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3151, 3724
BmrFI	CCNGG	4 cut(s)	290, 1159, 2641, 3458
BmrI	ACTGGG	2 cut(s)	2099, 2121
BmtI	GCTAGC	1 cut(s)	3288
BmuI	ACTGGG	2 cut(s)	2099, 2121
BpiI	GAAGAC	3 cut(s)	123, 740, 2715
BplI	GAGNNNNNCTC	2 cut(s)	1258, 1290
BpmI	CTGGAG	1 cut(s)	3519
Bpu10I	CCTNAGC	1 cut(s)	3492
Bpu1102I	GCTNAGC	1 cut(s)	1275
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	4 cut(s)	653, 2852, 3299, 3335
BpuMI	CCSGG	1 cut(s)	3458
Bsa29I	ATCGAT	1 cut(s)	1069
BsaAI	YACGTR	2 cut(s)	2999, 3243
BsaBI	GATNNNNATC	3 cut(s)	735, 1100, 1335
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	8 cut(s)	83, 92, 174, 203, 265, 1284, 2138, 2347
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 2248, 2808, 2809, 3990
Bse118I	RCCGGY	2 cut(s)	1990, 3847
Bse3DI	GCAATG	5 cut(s)	1215, 1624, 2794, 3366, 3378
Bse8I	GATNNNNATC	3 cut(s)	735, 1100, 1335
BseBI	CCWGG	3 cut(s)	290, 1159, 2641
BseCI	ATCGAT	1 cut(s)	1069
BseDI	CCNNGG	8 cut(s)	83, 92, 174, 203, 265, 1284, 2138, 2347
BseJI	GATNNNNATC	3 cut(s)	735, 1100, 1335
BseLI	CCNNNNNNNGG	5 cut(s)	74, 2248, 2808, 2809, 3990
BseMI	GCAATG	5 cut(s)	1215, 1624, 2794, 3366, 3378
BseRI	GAGGAG	7 cut(s)	653, 1535, 1960, 2263, 2407, 2879, 3073
BseX3I	CGGCCG	2 cut(s)	206, 308
BseYI	CCCAGC	3 cut(s)	479, 1034, 3726
BsgI	GTGCAG	3 cut(s)	368, 1050, 2780
Bsh1236I	CGCG	5 cut(s)	19, 94, 122, 176, 3388
Bsh1285I	CGRYCG	4 cut(s)	209, 311, 3848, 4009
BshFI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3152, 3725
BshVI	ATCGAT	1 cut(s)	1069
BsiEI	CGRYCG	4 cut(s)	209, 311, 3848, 4009
BsiHKAI	GWGCWC	2 cut(s)	3351, 3810
BsiHKCI	CYCGRG	2 cut(s)	239, 611
BsiSI	CCGG	5 cut(s)	75, 1991, 2679, 3457, 3848
BslFI	GGGAC	2 cut(s)	74, 2875
BslI	CCNNNNNNNGG	5 cut(s)	74, 2248, 2808, 2809, 3990
BsmAI	GTCTC	5 cut(s)	32, 1188, 1244, 3703, 3825
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	74, 2875
BsmI	GAATGC	6 cut(s)	309, 1201, 1408, 2340, 2402, 2789
BsnI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3152, 3725
BsoBI	CYCGRG	2 cut(s)	239, 611
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	2034, 3351, 3810
Bsp1407I	TGTACA	1 cut(s)	3643
Bsp1720I	GCTNAGC	1 cut(s)	1275
Bsp19I	CCATGG	2 cut(s)	265, 2347
Bsp68I	TCGCGA	1 cut(s)	3388
BspANI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3152, 3725
BspDI	ATCGAT	1 cut(s)	1069
BspFNI	CGCG	5 cut(s)	19, 94, 122, 176, 3388
BspHI	TCATGA	1 cut(s)	2079
BspMAI	CTGCAG	3 cut(s)	3123, 3544, 3655
BspMI	ACCTGC	2 cut(s)	2638, 3644
BspOI	GCTAGC	1 cut(s)	3288
BspPI	GGATC	9 cut(s)	725, 738, 1012, 2208, 2276, 2550, 3448, 3461, 3835
BspQI	GCTCTTC	1 cut(s)	3339
BspT104I	TTCGAA	1 cut(s)	161
BsrDI	GCAATG	5 cut(s)	1215, 1624, 2794, 3366, 3378
BsrFI	RCCGGY	2 cut(s)	1990, 3847
BsrGI	TGTACA	1 cut(s)	3643
BssAI	RCCGGY	2 cut(s)	1990, 3847
BssECI	CCNNGG	8 cut(s)	83, 92, 174, 203, 265, 1284, 2138, 2347
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	1972
BssT1I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
Bst2BI	CACGAG	1 cut(s)	1972
Bst2UI	CCWGG	3 cut(s)	290, 1159, 2641
Bst6I	CTCTTC	6 cut(s)	182, 1857, 1932, 3033, 3339, 3411
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	2 cut(s)	1412, 2443
BstAUI	TGTACA	1 cut(s)	3643
BstBAI	YACGTR	2 cut(s)	2999, 3243
BstBI	TTCGAA	1 cut(s)	161
BstDSI	CCRYGG	4 cut(s)	92, 174, 265, 2347
BstFNI	CGCG	5 cut(s)	19, 94, 122, 176, 3388
BstH2I	RGCGCY	3 cut(s)	1015, 1045, 2377
BstHHI	GCGC	6 cut(s)	21, 124, 813, 1014, 1044, 2376
BstMAI	GTCTC	5 cut(s)	32, 1188, 1244, 3703, 3825
BstMCI	CGRYCG	4 cut(s)	209, 311, 3848, 4009
BstNI	CCWGG	3 cut(s)	290, 1159, 2641
BstNSI	RCATGY	2 cut(s)	656, 2301
BstSCI	CCNGG	4 cut(s)	288, 1157, 2639, 3456
BstSFI	CTRYAG	8 cut(s)	1147, 1376, 2610, 3065, 3119, 3540, 3651, 3717
BstSNI	TACGTA	1 cut(s)	2999
BstUI	CGCG	5 cut(s)	19, 94, 122, 176, 3388
BstV2I	GAAGAC	3 cut(s)	123, 740, 2715
BstX2I	RGATCY	6 cut(s)	136, 721, 730, 2200, 2542, 3453
BstXI	CCANNNNNNTGG	2 cut(s)	1583, 1697
BstYI	RGATCY	6 cut(s)	136, 721, 730, 2200, 2542, 3453
BstZI	CGGCCG	2 cut(s)	206, 308
Bsu15I	ATCGAT	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	3622
BsuRI	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3152, 3725
BsuTUI	ATCGAT	1 cut(s)	1069
BtgI	CCRYGG	4 cut(s)	92, 174, 265, 2347
BtuMI	TCGCGA	1 cut(s)	3388
BveI	ACCTGC	2 cut(s)	2638, 3644
CaiI	CAGNNNCTG	1 cut(s)	2627
CciI	TCATGA	1 cut(s)	2079
CciNI	GCGGCCGC	1 cut(s)	308
CfoI	GCGC	6 cut(s)	21, 124, 813, 1014, 1044, 2376
Cfr10I	RCCGGY	2 cut(s)	1990, 3847
Cfr13I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3151, 3724
Cfr42I	CCGCGG	2 cut(s)	95, 177
ClaI	ATCGAT	1 cut(s)	1069
CseI	GACGC	2 cut(s)	274, 605
DraI	TTTAAA	1 cut(s)	970
DraIII	CACNNNGTG	1 cut(s)	540
EaeI	YGGCCR	4 cut(s)	177, 206, 308, 408
EagI	CGGCCG	2 cut(s)	206, 308
Eam1104I	CTCTTC	6 cut(s)	182, 1857, 1932, 3033, 3339, 3411
EarI	CTCTTC	6 cut(s)	182, 1857, 1932, 3033, 3339, 3411
Ecl136II	GAGCTC	2 cut(s)	3349, 3808
EclXI	CGGCCG	2 cut(s)	206, 308
Eco105I	TACGTA	1 cut(s)	2999
Eco130I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
Eco24I	GRGCYC	3 cut(s)	2034, 3351, 3810
Eco32I	GATATC	1 cut(s)	3587
Eco47I	GGWCC	4 cut(s)	88, 545, 1814, 2169
Eco47III	AGCGCT	1 cut(s)	1043
Eco52I	CGGCCG	2 cut(s)	206, 308
Eco53kI	GAGCTC	2 cut(s)	3349, 3808
Eco57I	CTGAAG	9 cut(s)	117, 206, 734, 1160, 1956, 2409, 3363, 3596, 3657
Eco88I	CYCGRG	2 cut(s)	239, 611
EcoICRI	GAGCTC	2 cut(s)	3349, 3808
EcoO109I	RGGNCCY	4 cut(s)	88, 545, 1814, 2169
EcoRII	CCWGG	3 cut(s)	288, 1157, 2639
EcoRV	GATATC	1 cut(s)	3587
EcoT14I	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
EcoT22I	ATGCAT	4 cut(s)	424, 559, 2596, 2620
EcoT38I	GRGCYC	3 cut(s)	2034, 3351, 3810
ErhI	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
Esp3I	CGTCTC	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	74, 2875
FauI	CCCGC	3 cut(s)	99, 181, 1048
FauNDI	CATATG	2 cut(s)	2714, 3426
FbaI	TGATCA	2 cut(s)	583, 3910
FriOI	GRGCYC	3 cut(s)	2034, 3351, 3810
FspAI	RTGCGCAY	1 cut(s)	812
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	6 cut(s)	20, 123, 812, 1013, 1043, 2375
GsaI	CCCAGC	3 cut(s)	483, 1038, 3730
GsuI	CTGGAG	1 cut(s)	3519
HaeII	RGCGCY	3 cut(s)	1015, 1045, 2377
HaeIII	GGCC	9 cut(s)	152, 179, 208, 310, 410, 2234, 2352, 3152, 3725
HapII	CCGG	5 cut(s)	75, 1991, 2679, 3457, 3848
HgaI	GACGC	2 cut(s)	274, 605
HhaI	GCGC	6 cut(s)	21, 124, 813, 1014, 1044, 2376
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	6 cut(s)	19, 122, 811, 1012, 1042, 2374
HinP1I	GCGC	6 cut(s)	19, 122, 811, 1012, 1042, 2374
HincII	GTYRAC	3 cut(s)	1023, 1164, 3126
HindII	GTYRAC	3 cut(s)	1023, 1164, 3126
HindIII	AAGCTT	2 cut(s)	1450, 2909
HpaI	GTTAAC	1 cut(s)	1023
HpaII	CCGG	5 cut(s)	75, 1991, 2679, 3457, 3848
HphI	GGTGA	7 cut(s)	374, 1526, 2127, 2155, 3029, 3668, 3902
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	9 cut(s)	106, 163, 177, 326, 400, 1042, 2191, 2433, 2911
HpyCH4IV	ACGT	3 cut(s)	2998, 3242, 3885
HpySE526I	ACGT	3 cut(s)	2998, 3242, 3885
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	6 cut(s)	19, 122, 811, 1012, 1042, 2374
KflI	GGGWCCC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	583, 3910
KspAI	GTTAAC	1 cut(s)	1023
KspI	CCGCGG	2 cut(s)	95, 177
LguI	GCTCTTC	1 cut(s)	3339
LmnI	GCTCC	9 cut(s)	46, 77, 252, 269, 640, 1039, 2276, 2681, 3813
MaeII	ACGT	3 cut(s)	2998, 3242, 3885
MaeIII	GTNAC	8 cut(s)	826, 1711, 2098, 2487, 2999, 3825, 3963, 4001
MflI	RGATCY	6 cut(s)	136, 721, 730, 2200, 2542, 3453
MhlI	GDGCHC	3 cut(s)	2034, 3351, 3810
MmeI	TCCRAC	6 cut(s)	543, 708, 1253, 3015, 3375, 3868
Mph1103I	ATGCAT	4 cut(s)	424, 559, 2596, 2620
MroXI	GAANNNNTTC	1 cut(s)	3042
MslI	CAYNNNNRTG	2 cut(s)	1344, 1503
MspA1I	CMGCKG	8 cut(s)	94, 176, 196, 1034, 1433, 2321, 3488, 3916
MspI	CCGG	5 cut(s)	75, 1991, 2679, 3457, 3848
MspR9I	CCNGG	4 cut(s)	290, 1159, 2641, 3458
Mva1269I	GAATGC	6 cut(s)	309, 1201, 1408, 2340, 2402, 2789
MvaI	CCWGG	3 cut(s)	290, 1159, 2641
MvnI	CGCG	5 cut(s)	19, 94, 122, 176, 3388
NciI	CCSGG	1 cut(s)	3458
NcoI	CCATGG	2 cut(s)	265, 2347
NdeI	CATATG	2 cut(s)	2714, 3426
NheI	GCTAGC	1 cut(s)	3284
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	826, 1711
NotI	GCGGCCGC	1 cut(s)	308
NruI	TCGCGA	1 cut(s)	3388
NsbI	TGCGCA	1 cut(s)	812
NsiI	ATGCAT	4 cut(s)	424, 559, 2596, 2620
NspI	RCATGY	2 cut(s)	656, 2301
NspV	TTCGAA	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	1344
PaeI	GCATGC	1 cut(s)	656
PaeR7I	CTCGAG	2 cut(s)	239, 611
PagI	TCATGA	1 cut(s)	2079
PaqCI	CACCTGC	1 cut(s)	3644
PciI	ACATGT	1 cut(s)	2297
PciSI	GCTCTTC	1 cut(s)	3339
PctI	GAATGC	6 cut(s)	309, 1201, 1408, 2340, 2402, 2789
PdmI	GAANNNNTTC	1 cut(s)	3042
PfoI	TCCNGGA	2 cut(s)	2639, 3456
Ppu21I	YACGTR	2 cut(s)	2999, 3243
PpuMI	RGGWCCY	4 cut(s)	88, 545, 1814, 2169
PscI	ACATGT	1 cut(s)	2297
PsiI	TTATAA	2 cut(s)	3440, 3527
Psp124BI	GAGCTC	2 cut(s)	3351, 3810
Psp5II	RGGWCCY	4 cut(s)	88, 545, 1814, 2169
Psp6I	CCWGG	3 cut(s)	288, 1157, 2639
PspFI	CCCAGC	3 cut(s)	479, 1034, 3726
PspGI	CCWGG	3 cut(s)	288, 1157, 2639
PspPI	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3151, 3724
PspPPI	RGGWCCY	4 cut(s)	88, 545, 1814, 2169
PstI	CTGCAG	3 cut(s)	3123, 3544, 3655
PstNI	CAGNNNCTG	1 cut(s)	2627
PsuI	RGATCY	6 cut(s)	136, 721, 730, 2200, 2542, 3453
PvuII	CAGCTG	3 cut(s)	1034, 2321, 3488
RruI	TCGCGA	1 cut(s)	3388
RseI	CAYNNNNRTG	2 cut(s)	1344, 1503
SacI	GAGCTC	2 cut(s)	3351, 3810
SacII	CCGCGG	2 cut(s)	95, 177
SapI	GCTCTTC	1 cut(s)	3339
Sau96I	GGNCC	6 cut(s)	88, 545, 1814, 2169, 3151, 3724
ScrFI	CCNGG	4 cut(s)	290, 1159, 2641, 3458
SduI	GDGCHC	3 cut(s)	2034, 3351, 3810
SfcI	CTRYAG	8 cut(s)	1147, 1376, 2610, 3065, 3119, 3540, 3651, 3717
Sfr274I	CTCGAG	2 cut(s)	239, 611
Sfr303I	CCGCGG	2 cut(s)	95, 177
SfuI	TTCGAA	1 cut(s)	161
SgrBI	CCGCGG	2 cut(s)	95, 177
SinI	GGWCC	4 cut(s)	88, 545, 1814, 2169
SlaI	CTCGAG	2 cut(s)	239, 611
SmiMI	CAYNNNNRTG	2 cut(s)	1344, 1503
SmlI	CTYRAG	6 cut(s)	239, 611, 668, 2831, 3278, 3350
SmoI	CTYRAG	6 cut(s)	239, 611, 668, 2831, 3278, 3350
SnaBI	TACGTA	1 cut(s)	2999
SpeI	ACTAGT	2 cut(s)	875, 2884
SphI	GCATGC	1 cut(s)	656
SstI	GAGCTC	2 cut(s)	3351, 3810
StyD4I	CCNGG	4 cut(s)	288, 1157, 2639, 3456
StyI	CCWWGG	5 cut(s)	83, 265, 1284, 2138, 2347
TaiI	ACGT	3 cut(s)	3001, 3245, 3888
TaqI	TCGA	9 cut(s)	110, 156, 161, 240, 374, 612, 934, 1069, 2961
TaqII	GACCGA	1 cut(s)	4023
TatI	WGTACW	5 cut(s)	1259, 1957, 2766, 3161, 3643
TauI	GCSGC	8 cut(s)	19, 179, 202, 211, 214, 310, 313, 1436
TseFI	GTSAC	2 cut(s)	826, 1711
Tsp45I	GTSAC	2 cut(s)	826, 1711
TspGWI	ACGGA	5 cut(s)	59, 117, 247, 250, 522
VpaK11BI	GGWCC	4 cut(s)	88, 545, 1814, 2169
XapI	RAATTY	9 cut(s)	571, 1090, 1113, 1848, 2305, 2992, 3200, 3529, 3929
XbaI	TCTAGA	1 cut(s)	2545
XceI	RCATGY	2 cut(s)	656, 2301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XhoI	CTCGAG	2 cut(s)	239, 611
XmaJI	CCTAGG	2 cut(s)	83, 2138
XmnI	GAANNNNTTC	1 cut(s)	3042
Zsp2I	ATGCAT	4 cut(s)	424, 559, 2596, 2620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.