Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Reverse (-)

13650888 .. 13651835

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1164700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGCCGCCGCCTGGAGCCCGAGCAGTTCAACCCCGACCGCCCGCAGCCCGAGCAGCTCCACCCCTACCGCCCGCAGCCCGATCAGTACGGCCCCGACCCCCCGCAGGGATACGCCCTCAGCGGCAAGATTATGCTCAGCGCCATAGTCATCCTCTTTTTCGTCGTCATCCTCATGGTCTGCCTCCACCTCTACGCCCGCTGGTACCTTCATCGCGCCCGCCGCCGCCATCTCCGCCGCAACCACAGAAACCGCCGCACCCACATCGTCTTTCATGAGGACGCCGCTACCCTCTCCGCCGGCCCCACCCGCGGCCTCGACGCCTCCGTCCTCAACTCCCTCCCCGTATTTGTTTATTCGTCGAAATCGGATCAGACAGCGTTGTTTCAGCAGCAGCCGATTTTGGAGTGCGCCGTCTGCTTGTCGGAATTCGAGGACAACGAAACGGGGCGTTTGCTTCCGAAGTGTAAGCACAGTTTCCATATCGAGTGTATTGATATGTGGTTCCATTCTCACTCCACGTGTCCCCTTTGCCGGGCCCCCGTGGAACCGAGCCCGGAGTCTGAAACCCAGCCCGACGTGGTTCTTAGTGTCTGCGAACCTGACGGAGGCGAACCGGGCCCGAGCTCCGATTTGTGCTCGGAGTGTTGCAATTCCGAGACGACGTCGTCAGGGGCGTGGAGAAAGCCGTCGAACATCGTGGTTCCGAGAAGGAACGAGAGTTTCGGGAGGGGGGAGGACTCGGGACTCGGCGAATCGCCGGCAGGTCAGTCGTTTAGGTCGCCGATGAGTCGGATGTTGTCGTTTAGGAGAATTCTAAGCCGGGAAAAACGAAACGGCGGCGTTTCACCTTCGGGAGTAAACGCGGGGAGTTGCAGTTCGGTGGCCGAGTCGGATATCGAACTCGGTGGCCGACAAGGGACCACCGAGTGCACTCGGAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

316

Amino Acids

35.13

Weight (kDa)

6.83

Isoelectric Point (pI)

84.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	136 - 179	1.4e-12	Ring finger domain
zf-RING_11	PF17123	136 - 165	7.8e-10	RING-like zinc finger
zf-rbx1	PF12678	136 - 179	1.2e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	136 - 178	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	137 - 178	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	326, 667
AatII	GACGTC	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	755
Acc65I	GGTACC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	3 cut(s)	216, 312, 866
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	2 cut(s)	885, 910
AcsI	RAATTY	2 cut(s)	428, 813
AcvI	CACGTG	1 cut(s)	522
AcyI	GRCGYC	3 cut(s)	282, 321, 665
AdeI	CACNNNGTG	1 cut(s)	930
AfaI	GTAC	2 cut(s)	89, 206
AfiI	CCNNNNNNNGG	7 cut(s)	13, 106, 107, 311, 534, 535, 608
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	31
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	12
AloI	GAACNNNNNNTCC	2 cut(s)	862, 894
AluBI	AGCT	2 cut(s)	58, 627
AluI	AGCT	2 cut(s)	58, 627
Alw21I	GWGCWC	3 cut(s)	629, 641, 935
Alw26I	GTCTC	1 cut(s)	653
Alw44I	GTGCAC	1 cut(s)	931
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	4 cut(s)	20, 50, 622, 742
AoxI	GGCC	8 cut(s)	4, 91, 301, 313, 537, 619, 885, 910
ApaI	GGGCCC	2 cut(s)	541, 623
ApaLI	GTGCAC	1 cut(s)	931
ApeKI	GCWGC	5 cut(s)	46, 55, 76, 391, 394
ApoI	RAATTY	2 cut(s)	428, 813
Asp718I	GGTACC	1 cut(s)	204
AspLEI	GCGC	3 cut(s)	143, 218, 413
AspS9I	GGNCC	8 cut(s)	4, 92, 302, 537, 538, 619, 620, 921
AsuC2I	CCSGG	4 cut(s)	536, 557, 618, 824
AsuHPI	GGTGA	1 cut(s)	840
AvaI	CYCGRG	4 cut(s)	20, 50, 622, 742
AvaII	GGWCC	1 cut(s)	921
BaeGI	GKGCMC	3 cut(s)	541, 623, 935
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	5 cut(s)	21, 541, 557, 623, 629
BbrPI	CACGTG	1 cut(s)	522
Bbv12I	GWGCWC	3 cut(s)	629, 641, 935
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	5 cut(s)	58, 67, 88, 403, 406
BccI	CCATC	1 cut(s)	237
BceAI	ACGGC	4 cut(s)	106, 398, 673, 853
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 753, 787
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	104
BcnI	CCSGG	4 cut(s)	536, 557, 618, 824
BcoDI	GTCTC	1 cut(s)	653
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	137
Bme1390I	CCNGG	5 cut(s)	14, 536, 557, 618, 824
Bme18I	GGWCC	1 cut(s)	921
BmeT110I	CYCGRG	4 cut(s)	20, 50, 622, 742
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	8 cut(s)	4, 92, 302, 537, 538, 619, 620, 921
BmrFI	CCNGG	5 cut(s)	14, 536, 557, 618, 824
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	4 cut(s)	536, 557, 618, 824
BsaAI	YACGTR	1 cut(s)	522
BsaHI	GRCGYC	3 cut(s)	282, 321, 665
BsaJI	CCNNGG	2 cut(s)	310, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	862, 892
Bsc4I	CCNNNNNNNGG	7 cut(s)	13, 106, 107, 311, 534, 535, 608
Bse118I	RCCGGY	2 cut(s)	299, 760
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	310, 543
BseGI	GGATG	3 cut(s)	150, 168, 801
BseLI	CCNNNNNNNGG	7 cut(s)	13, 106, 107, 311, 534, 535, 608
BseMII	CTCAG	2 cut(s)	133, 151
BseSI	GKGCMC	3 cut(s)	541, 623, 935
BseXI	GCAGC	5 cut(s)	58, 67, 88, 403, 406
BseYI	CCCAGC	1 cut(s)	570
Bsh1236I	CGCG	3 cut(s)	216, 312, 866
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	8 cut(s)	6, 93, 303, 315, 539, 621, 887, 912
BshNI	GGYRCC	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	3 cut(s)	629, 641, 935
BsiHKCI	CYCGRG	4 cut(s)	20, 50, 622, 742
BsiSI	CCGG	6 cut(s)	300, 535, 557, 617, 761, 823
BslFI	GGGAC	3 cut(s)	510, 759, 934
BslI	CCNNNNNNNGG	7 cut(s)	13, 106, 107, 311, 534, 535, 608
BsmAI	GTCTC	1 cut(s)	653
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	3 cut(s)	510, 759, 934
BsnI	GGCC	8 cut(s)	6, 93, 303, 315, 539, 621, 887, 912
BsoBI	CYCGRG	4 cut(s)	20, 50, 622, 742
Bsp120I	GGGCCC	2 cut(s)	537, 619
Bsp1286I	GDGCHC	7 cut(s)	21, 541, 557, 623, 629, 641, 935
Bsp143I	GATC	2 cut(s)	82, 370
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	8 cut(s)	6, 93, 303, 315, 539, 621, 887, 912
BspCNI	CTCAG	2 cut(s)	132, 150
BspFNI	CGCG	3 cut(s)	216, 312, 866
BspHI	TCATGA	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	299, 760
BssAI	RCCGGY	2 cut(s)	299, 760
BssECI	CCNNGG	2 cut(s)	310, 543
BssMI	GATC	2 cut(s)	82, 370
BssNI	GRCGYC	3 cut(s)	282, 321, 665
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	476
BstACI	GRCGYC	3 cut(s)	282, 321, 665
BstBAI	YACGTR	1 cut(s)	522
BstC8I	GCNNGC	6 cut(s)	44, 74, 199, 220, 301, 762
BstDEI	CTNAG	4 cut(s)	119, 137, 587, 818
BstDSI	CCRYGG	2 cut(s)	310, 543
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	3 cut(s)	150, 168, 801
BstFNI	CGCG	3 cut(s)	216, 312, 866
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	3 cut(s)	143, 218, 413
BstKTI	GATC	2 cut(s)	85, 373
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	82, 370
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 55, 222, 234, 309, 417, 618
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	5 cut(s)	12, 534, 555, 616, 822
BstSLI	GKGCMC	3 cut(s)	541, 623, 935
BstUI	CGCG	3 cut(s)	216, 312, 866
BstV1I	GCAGC	5 cut(s)	58, 67, 88, 403, 406
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	8 cut(s)	6, 93, 303, 315, 539, 621, 887, 912
BtgI	CCRYGG	2 cut(s)	310, 543
BtgZI	GCGATG	1 cut(s)	197
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	3 cut(s)	150, 168, 801
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	6 cut(s)	44, 74, 199, 220, 301, 762
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	3 cut(s)	143, 218, 413
Cfr10I	RCCGGY	2 cut(s)	299, 760
Cfr13I	GGNCC	8 cut(s)	4, 92, 302, 537, 538, 619, 620, 921
Cfr42I	CCGCGG	1 cut(s)	313
CseI	GACGC	2 cut(s)	290, 329
Csp6I	GTAC	2 cut(s)	88, 205
CviAII	CATG	2 cut(s)	175, 275
CviQI	GTAC	2 cut(s)	88, 205
DdeI	CTNAG	4 cut(s)	119, 137, 587, 818
DpnI	GATC	2 cut(s)	84, 372
DpnII	GATC	2 cut(s)	82, 370
DraIII	CACNNNGTG	1 cut(s)	930
DrdI	GACNNNNNNGTC	2 cut(s)	326, 667
DseDI	GACNNNNNNGTC	2 cut(s)	326, 667
EaeI	YGGCCR	2 cut(s)	885, 910
EciI	GGCGGA	2 cut(s)	224, 286
Ecl136II	GAGCTC	1 cut(s)	627
Eco24I	GRGCYC	5 cut(s)	21, 541, 557, 623, 629
Eco32I	GATATC	1 cut(s)	898
Eco47I	GGWCC	1 cut(s)	921
Eco53kI	GAGCTC	1 cut(s)	627
Eco72I	CACGTG	1 cut(s)	522
Eco88I	CYCGRG	4 cut(s)	20, 50, 622, 742
EcoICRI	GAGCTC	1 cut(s)	627
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRI	GAATTC	2 cut(s)	428, 813
EcoRII	CCWGG	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	898
EcoT38I	GRGCYC	5 cut(s)	21, 541, 557, 623, 629
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	2 cut(s)	178, 278
FaiI	YATR	6 cut(s)	134, 146, 176, 276, 483, 500
FaqI	GGGAC	3 cut(s)	510, 759, 934
FatI	CATG	2 cut(s)	174, 274
FauI	CCCGC	7 cut(s)	51, 81, 111, 206, 227, 317, 859
FokI	GGATG	3 cut(s)	137, 155, 808
FriOI	GRGCYC	5 cut(s)	21, 541, 557, 623, 629
GlaI	GCGC	3 cut(s)	142, 217, 412
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	8 cut(s)	6, 93, 303, 315, 539, 621, 887, 912
HapII	CCGG	6 cut(s)	300, 535, 557, 617, 761, 823
HgaI	GACGC	2 cut(s)	290, 329
HhaI	GCGC	3 cut(s)	143, 218, 413
Hin1I	GRCGYC	3 cut(s)	282, 321, 665
Hin1II	CATG	2 cut(s)	178, 278
Hin6I	GCGC	3 cut(s)	141, 216, 411
HinP1I	GCGC	3 cut(s)	141, 216, 411
HinfI	GANTC	6 cut(s)	560, 740, 747, 755, 790, 890
HpaII	CCGG	6 cut(s)	300, 535, 557, 617, 761, 823
HphI	GGTGA	1 cut(s)	840
Hpy166II	GTNNAC	2 cut(s)	862, 933
Hpy188III	TCNNGA	4 cut(s)	275, 727, 744, 855
Hpy8I	GTNNAC	2 cut(s)	862, 933
Hpy99I	CGWCG	7 cut(s)	167, 323, 364, 581, 667, 670, 694
HpyAV	CCTTC	3 cut(s)	218, 705, 861
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	3 cut(s)	521, 579, 665
HpyCH4V	TGCA	3 cut(s)	651, 876, 933
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 55, 222, 234, 309, 417, 618
HpyF3I	CTNAG	4 cut(s)	119, 137, 587, 818
HpySE526I	ACGT	3 cut(s)	521, 579, 665
Hsp92I	GRCGYC	3 cut(s)	282, 321, 665
Hsp92II	CATG	2 cut(s)	178, 278
HspAI	GCGC	3 cut(s)	141, 216, 411
KpnI	GGTACC	1 cut(s)	208
KroI	GCCGGC	2 cut(s)	299, 760
KroNI	GCCGGC	2 cut(s)	301, 762
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	82, 370
LmnI	GCTCC	3 cut(s)	16, 63, 632
Lsp1109I	GCAGC	5 cut(s)	58, 67, 88, 403, 406
MaeII	ACGT	3 cut(s)	521, 579, 665
MalI	GATC	2 cut(s)	84, 372
MboI	GATC	2 cut(s)	82, 370
MhlI	GDGCHC	7 cut(s)	21, 541, 557, 623, 629, 641, 935
MluCI	AATT	3 cut(s)	428, 652, 813
MlyI	GAGTC	5 cut(s)	569, 734, 741, 799, 899
MmeI	TCCRAC	3 cut(s)	405, 773, 873
MroNI	GCCGGC	2 cut(s)	299, 760
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	3 cut(s)	123, 201, 312
MspI	CCGG	6 cut(s)	300, 535, 557, 617, 761, 823
MspR9I	CCNGG	5 cut(s)	14, 536, 557, 618, 824
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	3 cut(s)	216, 312, 866
MwoI	GCNNNNNNNGC	7 cut(s)	52, 55, 222, 234, 309, 417, 618
NaeI	GCCGGC	2 cut(s)	301, 762
NciI	CCSGG	4 cut(s)	536, 557, 618, 824
NdeII	GATC	2 cut(s)	82, 370
NgoMIV	GCCGGC	2 cut(s)	299, 760
NlaIII	CATG	2 cut(s)	178, 278
NmeAIII	GCCGAG	2 cut(s)	729, 913
PagI	TCATGA	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 438, 674
PdiI	GCCGGC	2 cut(s)	301, 762
PfeI	GAWTC	1 cut(s)	755
PflFI	GACNNNGTC	2 cut(s)	664, 667
PleI	GAGTC	5 cut(s)	568, 734, 741, 798, 898
PmaCI	CACGTG	1 cut(s)	522
PmlI	CACGTG	1 cut(s)	522
PpsI	GAGTC	5 cut(s)	568, 734, 741, 798, 898
Ppu21I	YACGTR	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	12
PspOMI	GGGCCC	2 cut(s)	537, 619
PspPI	GGNCC	8 cut(s)	4, 92, 302, 537, 538, 619, 620, 921
PsyI	GACNNNGTC	2 cut(s)	664, 667
RsaI	GTAC	2 cut(s)	89, 206
RsaNI	GTAC	2 cut(s)	88, 205
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	629
SacII	CCGCGG	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	82, 370
Sau96I	GGNCC	8 cut(s)	4, 92, 302, 537, 538, 619, 620, 921
SchI	GAGTC	5 cut(s)	569, 734, 741, 799, 899
ScrFI	CCNGG	5 cut(s)	14, 536, 557, 618, 824
SduI	GDGCHC	7 cut(s)	21, 541, 557, 623, 629, 641, 935
Sfr303I	CCGCGG	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	921
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	428, 652, 813
SstI	GAGCTC	1 cut(s)	629
StyD4I	CCNGG	5 cut(s)	12, 534, 555, 616, 822
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	3 cut(s)	524, 582, 668
TaqI	TCGA	6 cut(s)	318, 362, 432, 486, 692, 900
TasI	AATT	3 cut(s)	428, 652, 813
TfiI	GAWTC	1 cut(s)	755
TseI	GCWGC	5 cut(s)	46, 55, 76, 391, 394
TspDTI	ATGAA	2 cut(s)	200, 263
TspGWI	ACGGA	2 cut(s)	316, 621
Tth111I	GACNNNGTC	2 cut(s)	664, 667
VneI	GTGCAC	1 cut(s)	931
VpaK11BI	GGWCC	1 cut(s)	921
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	428, 813
ZraI	GACGTC	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.