Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Reverse (-)

18262891 .. 18263778

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007568

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCTACGTCTAGCATGTCTAGCTTCAACGAGTTACCCCACCGACCGGATTTTTCTACATACTCCACTCCCCCGCCGGAGCCCTACAAGGGCTACGCGCTCAGCGGCAAGATTATGCTGAGCGCCATCGTCATCCTCTTCTTCGTCGTCATTCTAATGGTGTGTCTCCACCTCTACGCGCGCTGGTACCTCCTCCGGGCGCGCCGCCGCAACCTCCGCAGAAACCGCCGCAACCGCCGGAACCACTTGATCTTCCACGAGGACGAGGCCAACGCCGCCGTCTCGGCCGCCATGCGCGGCCTCGACGAGTCGGTGCTCAAGTCGCTGCCGGTGTTCGTCTACGACTCGAAGACCCACCCGGAGCCGATTCTGGAGTGCGCCGTGTGCTTGTCGGAGTTCGAAGAGAACGAAACGGGTCGGGTTCTCCCGAAATGTAAGCATAGCTTCCATATCGAGTGTATCGACATGTGGTTCCACTCGCACTCCACGTGCCCCCTCTGTCGGTCGTTACGGCAGACGTCGTCGTTTGGGCCGAGAAGGAAACCGATGGATATCGCGGTGCCGAGTCGGCACGAGAGCTTTGGGAGATCGGAGGCCGAGTCGCCGTCGGGTCAGGCGTTTCGGTCGCCGATGAGTCGGATGCTGTCGTTTAAACGGATGCTGAGCAGAGACAAAAGAAACGGCGGCGTTTCGCCTTCCGGGAATGCGAGTTGTAGCTCGGTCGCCGAGTTGGATATTGAGCGAGGACGAGAAGGGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

255

Amino Acids

28.87

Weight (kDa)

9.31

Isoelectric Point (pI)

83.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	125 - 168	5.7e-13	Ring finger domain
zf-RING_11	PF17123	125 - 154	3.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	125 - 167	2.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	126 - 168	8.3e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	126 - 167	1.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	521
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	186, 559
AccI	GTMKAC	2 cut(s)	5, 339
AccII	CGCG	6 cut(s)	98, 179, 181, 202, 297, 557
AcoI	YGGCCR	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	46, 89, 196, 501
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	4 cut(s)	24, 444, 579, 717
AluI	AGCT	4 cut(s)	24, 444, 579, 717
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	3 cut(s)	170, 286, 663
AoxI	GGCC	5 cut(s)	267, 285, 298, 530, 594
ApeKI	GCWGC	1 cut(s)	325
AscI	GGCGCGCC	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	8 cut(s)	100, 125, 181, 183, 202, 204, 297, 380
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	3 cut(s)	197, 359, 700
AsuII	TTCGAA	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	494
BanI	GGYRCC	2 cut(s)	186, 559
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	2 cut(s)	257, 572
BbrPI	CACGTG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	2 cut(s)	134, 541
BceAI	ACGGC	5 cut(s)	263, 365, 527, 589, 697
BcnI	CCSGG	3 cut(s)	197, 359, 700
BcoDI	GTCTC	3 cut(s)	170, 286, 663
BfaI	CTAG	2 cut(s)	12, 21
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	2 cut(s)	284, 568
BisI	GCNGC	9 cut(s)	106, 205, 208, 229, 276, 288, 298, 326, 685
BlpI	GCTNAGC	3 cut(s)	101, 119, 662
BlsI	GCNGC	9 cut(s)	107, 206, 209, 230, 277, 289, 299, 327, 686
Bme1390I	CCNGG	3 cut(s)	197, 359, 700
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	6 cut(s)	81, 188, 242, 363, 473, 561
BmrFI	CCNGG	3 cut(s)	197, 359, 700
BmsI	GCATC	2 cut(s)	630, 648
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	3 cut(s)	101, 119, 662
Bpu14I	TTCGAA	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	197, 359, 700
BsaAI	YACGTR	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	4 cut(s)	467, 497, 584, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 89, 196, 501
Bse118I	RCCGGY	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	551
BseGI	GGATG	3 cut(s)	132, 645, 663
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	4 cut(s)	46, 89, 196, 501
BseMII	CTCAG	4 cut(s)	110, 115, 653, 750
BsePI	GCGCGC	2 cut(s)	179, 200
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	494
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	6 cut(s)	98, 179, 181, 202, 297, 557
Bsh1285I	CGRYCG	5 cut(s)	47, 288, 506, 626, 723
BshFI	GGCC	5 cut(s)	269, 287, 300, 532, 596
BshNI	GGYRCC	2 cut(s)	186, 559
BsiEI	CGRYCG	5 cut(s)	47, 288, 506, 626, 723
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	7 cut(s)	47, 77, 196, 238, 329, 359, 699
BslI	CCNNNNNNNGG	4 cut(s)	46, 89, 196, 501
BsmAI	GTCTC	3 cut(s)	170, 286, 663
BsmBI	CGTCTC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	5 cut(s)	269, 287, 300, 532, 596
Bsp119I	TTCGAA	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	84, 318, 494
Bsp143I	GATC	2 cut(s)	249, 587
Bsp1720I	GCTNAGC	3 cut(s)	101, 119, 662
BspANI	GGCC	5 cut(s)	269, 287, 300, 532, 596
BspCNI	CTCAG	4 cut(s)	111, 114, 654, 751
BspFNI	CGCG	6 cut(s)	98, 179, 181, 202, 297, 557
BspLI	GGNNCC	6 cut(s)	81, 188, 242, 363, 473, 561
BspT104I	TTCGAA	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	186, 559
BsrFI	RCCGGY	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	328
BssHII	GCGCGC	2 cut(s)	179, 200
BssMI	GATC	2 cut(s)	249, 587
BssNI	GRCGYC	1 cut(s)	518
BssSI	CACGAG	2 cut(s)	257, 572
Bst2BI	CACGAG	2 cut(s)	257, 572
Bst6I	CTCTTC	2 cut(s)	143, 396
BstACI	GRCGYC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	489
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	181, 202
BstDEI	CTNAG	4 cut(s)	101, 119, 662, 759
BstF5I	GGATG	3 cut(s)	132, 645, 663
BstFNI	CGCG	6 cut(s)	98, 179, 181, 202, 297, 557
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	8 cut(s)	100, 125, 181, 183, 202, 204, 297, 380
BstKTI	GATC	2 cut(s)	252, 590
BstMAI	GTCTC	3 cut(s)	170, 286, 663
BstMBI	GATC	2 cut(s)	249, 587
BstMCI	CGRYCG	5 cut(s)	47, 288, 506, 626, 723
BstMWI	GCNNNNNNNGC	9 cut(s)	21, 216, 225, 234, 275, 284, 322, 384, 568
BstNSI	RCATGY	2 cut(s)	19, 469
BstSCI	CCNGG	3 cut(s)	195, 357, 698
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	6 cut(s)	98, 179, 181, 202, 297, 557
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	356
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	269, 287, 300, 532, 596
BtsCI	GGATG	3 cut(s)	132, 645, 663
Cac8I	GCNNGC	2 cut(s)	181, 202
CfoI	GCGC	8 cut(s)	100, 125, 181, 183, 202, 204, 297, 380
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	16, 292, 466
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	101, 119, 662, 759
DpnI	GATC	2 cut(s)	251, 589
DpnII	GATC	2 cut(s)	249, 587
DraI	TTTAAA	1 cut(s)	652
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	143, 396
EarI	CTCTTC	2 cut(s)	143, 396
EclXI	CGGCCG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	553
Eco52I	CGGCCG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	489
EcoRV	GATATC	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	3 cut(s)	19, 295, 469
FaiI	YATR	7 cut(s)	17, 61, 116, 293, 441, 450, 467
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	15, 291, 465
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	2 cut(s)	5, 339
Fnu4HI	GCNGC	9 cut(s)	106, 205, 208, 229, 276, 288, 298, 326, 685
FokI	GGATG	3 cut(s)	119, 652, 670
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	9 cut(s)	106, 205, 208, 229, 276, 288, 298, 326, 685
FspBI	CTAG	2 cut(s)	12, 21
GlaI	GCGC	8 cut(s)	99, 124, 180, 182, 201, 203, 296, 379
GluI	GCNGC	9 cut(s)	106, 205, 208, 229, 276, 288, 298, 326, 685
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	5 cut(s)	269, 287, 300, 532, 596
HapII	CCGG	7 cut(s)	47, 77, 196, 238, 329, 359, 699
HhaI	GCGC	8 cut(s)	100, 125, 181, 183, 202, 204, 297, 380
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	3 cut(s)	19, 295, 469
Hin6I	GCGC	8 cut(s)	98, 123, 179, 181, 200, 202, 295, 378
HinP1I	GCGC	8 cut(s)	98, 123, 179, 181, 200, 202, 295, 378
HinfI	GANTC	6 cut(s)	308, 344, 367, 565, 599, 634
HpaII	CCGG	7 cut(s)	47, 77, 196, 238, 329, 359, 699
Hpy166II	GTNNAC	2 cut(s)	6, 340
Hpy188I	TCNGA	3 cut(s)	394, 592, 639
Hpy188III	TCNNGA	2 cut(s)	371, 427
Hpy8I	GTNNAC	2 cut(s)	6, 340
Hpy99I	CGWCG	5 cut(s)	149, 308, 523, 526, 610
HpyAV	CCTTC	3 cut(s)	531, 705, 746
HpyCH4IV	ACGT	3 cut(s)	8, 488, 518
HpyF10VI	GCNNNNNNNGC	9 cut(s)	21, 216, 225, 234, 275, 284, 322, 384, 568
HpyF3I	CTNAG	4 cut(s)	101, 119, 662, 759
HpySE526I	ACGT	3 cut(s)	8, 488, 518
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	3 cut(s)	19, 295, 469
HspAI	GCGC	8 cut(s)	98, 123, 179, 181, 200, 202, 295, 378
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	249, 587
LmnI	GCTCC	2 cut(s)	79, 361
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	2 cut(s)	630, 648
MaeI	CTAG	2 cut(s)	12, 21
MaeII	ACGT	3 cut(s)	8, 488, 518
MaeIII	GTNAC	2 cut(s)	33, 507
MalI	GATC	2 cut(s)	251, 589
MboI	GATC	2 cut(s)	249, 587
MboII	GAAGA	5 cut(s)	130, 133, 244, 361, 413
MhlI	GDGCHC	3 cut(s)	84, 318, 494
MlyI	GAGTC	5 cut(s)	317, 338, 574, 608, 643
MmeI	TCCRAC	3 cut(s)	372, 617, 711
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	7 cut(s)	47, 77, 196, 238, 329, 359, 699
MspR9I	CCNGG	3 cut(s)	197, 359, 700
MssI	GTTTAAAC	1 cut(s)	652
Mva1269I	GAATGC	1 cut(s)	709
MvnI	CGCG	6 cut(s)	98, 179, 181, 202, 297, 557
MwoI	GCNNNNNNNGC	9 cut(s)	21, 216, 225, 234, 275, 284, 322, 384, 568
NciI	CCSGG	3 cut(s)	197, 359, 700
NdeII	GATC	2 cut(s)	249, 587
NlaIII	CATG	3 cut(s)	19, 295, 469
NlaIV	GGNNCC	6 cut(s)	81, 188, 242, 363, 473, 561
NmeAIII	GCCGAG	5 cut(s)	263, 558, 588, 622, 751
NspI	RCATGY	2 cut(s)	19, 469
NspV	TTCGAA	1 cut(s)	399
PalAI	GGCGCGCC	1 cut(s)	200
PauI	GCGCGC	2 cut(s)	179, 200
PciI	ACATGT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	5 cut(s)	405, 459, 485, 530, 614
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	367
PflFI	GACNNNGTC	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	698
PkrI	GCNGC	9 cut(s)	107, 206, 209, 230, 277, 289, 299, 327, 686
PleI	GAGTC	5 cut(s)	316, 338, 573, 607, 642
PmaCI	CACGTG	1 cut(s)	489
PmeI	GTTTAAAC	1 cut(s)	652
PmlI	CACGTG	1 cut(s)	489
PpsI	GAGTC	5 cut(s)	316, 338, 573, 607, 642
Ppu21I	YACGTR	1 cut(s)	489
PscI	ACATGT	1 cut(s)	465
PspCI	CACGTG	1 cut(s)	489
PspN4I	GGNNCC	6 cut(s)	81, 188, 242, 363, 473, 561
PspPI	GGNCC	1 cut(s)	530
PsyI	GACNNNGTC	1 cut(s)	520
PteI	GCGCGC	2 cut(s)	179, 200
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	9 cut(s)	106, 205, 208, 229, 276, 288, 298, 326, 685
Sau3AI	GATC	2 cut(s)	249, 587
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	5 cut(s)	317, 338, 574, 608, 643
ScrFI	CCNGG	3 cut(s)	197, 359, 700
SduI	GDGCHC	3 cut(s)	84, 318, 494
SfaNI	GCATC	2 cut(s)	630, 648
SfuI	TTCGAA	1 cut(s)	399
SgsI	GGCGCGCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SspMI	CTAG	2 cut(s)	12, 21
StyD4I	CCNGG	3 cut(s)	195, 357, 698
TaiI	ACGT	3 cut(s)	11, 491, 521
TaqI	TCGA	5 cut(s)	303, 347, 399, 453, 462
TaqII	GACCGA	3 cut(s)	492, 612, 709
TauI	GCSGC	8 cut(s)	108, 207, 210, 231, 278, 290, 300, 687
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TseI	GCWGC	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	670
Tth111I	GACNNNGTC	1 cut(s)	520
XceI	RCATGY	2 cut(s)	19, 469
XmiI	GTMKAC	2 cut(s)	5, 339
XspI	CTAG	2 cut(s)	12, 21
ZraI	GACGTC	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.