Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Reverse (-)

9770166 .. 9771580

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTTTTTCCTTCAATGGACCAACGCCCAGACCCCGATCATCAAGACGCCTTCGCACCCCAACCCTATAAGGGCTACGCCGTCAGCGGTAAGATCATGCTCAGTGCCATCATCATCCTCTTCTTCGTCGTCATCCTCATGGTCTGCCTCCACCTCTACGCCCGCTGGTACCTCCTCCGCGCCCGCCGCCGCCATCTCCGTCGCAACCGCCGCAATCGCCGAACCCACATAATGTTTCACGAGGACCCATACGCCGCTACCCTTTCTACCCCCACACGCGGCCTCGACGCCTCCATCCTCAACTCCCTTCCCGTCTTCGTCTACTCCTCTAAATCGACTGAAACAACGCAGTTTCGTGAGCAGCCGATTTTGGAGTGCGCCGTCTGCTTGTCCGAGTTCGAGGACGGCGAGAAGGGCCGATTGCTTCCGAAATGTAAGCACAGCTTCCACATCGAGTGTATTGACATGTGGTTCCACTCTCACTCGACGTGCCCCCTTTGTCGGGCCCCGGTGGAACCGGGTCCGGAGTCGGAAACCCGCGCCGACGTGGTTTTGAATGTTTGCGAACTGGAAGGGGGTGAACCGGGTCCGAGTTCAGAGCTGTGCTCCGAGTGTTGTAATTCCGAAACTACGTCGTCGGGTTCGCGGAGAAAACCGCTGGACATCGTGGTTCCGAGAAGGAACCAGAGTTTTGGGAGGGGGGAGGACTCGGGCCGCGGCGACTCGCCGGCGAGCCAGGCGTTCAGGTCACCGATGAGTCGGATGCTGTCGTTTACGAGAATGCTCAGCAGAGACAAACGCAACGGCGGCGTTTCTCCATCGGGAGGGAACGCGGGCGGTTGTAGTTCGGTGGCCGAGTCGGAGGATATCGAGGTCGGTGGACGACAAGAGACTCGGAAAGAGTACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

305

Amino Acids

34.07

Weight (kDa)

8.22

Isoelectric Point (pI)

78.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	6 cut(s)	180, 279, 540, 646, 717, 833
AccIII	TCCGGA	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	852
AcyI	GRCGYC	2 cut(s)	48, 288
AfaI	GTAC	2 cut(s)	170, 905
AfiI	CCNNNNNNNGG	5 cut(s)	71, 278, 501, 502, 824
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	15, 556
AjiI	CACGTC	2 cut(s)	489, 547
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	2 cut(s)	444, 601
AluI	AGCT	2 cut(s)	444, 601
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	2 cut(s)	786, 884
Ama87I	CYCGRG	1 cut(s)	709
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	5 cut(s)	280, 415, 504, 712, 852
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	361
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	182, 380, 542
AspS9I	GGNCC	8 cut(s)	19, 244, 415, 504, 505, 521, 587, 712
AsuC2I	CCSGG	3 cut(s)	509, 519, 585
AsuHPI	GGTGA	2 cut(s)	590, 741
AvaI	CYCGRG	1 cut(s)	709
AvaII	GGWCC	4 cut(s)	19, 244, 521, 587
BaeGI	GKGCMC	2 cut(s)	494, 508
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	4 cut(s)	116, 201, 302, 826
BceAI	ACGGC	4 cut(s)	65, 365, 421, 820
BciT130I	CCWGG	1 cut(s)	737
BcnI	CCSGG	3 cut(s)	509, 519, 585
BcoDI	GTCTC	2 cut(s)	786, 884
BisI	GCNGC	9 cut(s)	187, 190, 211, 255, 280, 362, 715, 718, 808
BlpI	GCTNAGC	1 cut(s)	785
BlsI	GCNGC	9 cut(s)	188, 191, 212, 256, 281, 363, 716, 719, 809
Bme1390I	CCNGG	4 cut(s)	509, 519, 585, 737
Bme18I	GGWCC	4 cut(s)	19, 244, 521, 587
BmeT110I	CYCGRG	1 cut(s)	709
BmgBI	CACGTC	2 cut(s)	489, 547
BmgT120I	GGNCC	8 cut(s)	19, 244, 415, 504, 505, 521, 587, 712
BmrFI	CCNGG	4 cut(s)	509, 519, 585, 737
BmsI	GCATC	1 cut(s)	753
BpiI	GAAGAC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
Bpu1102I	GCTNAGC	1 cut(s)	785
BpuMI	CCSGG	3 cut(s)	509, 519, 585
BsaHI	GRCGYC	2 cut(s)	48, 288
BsaJI	CCNNGG	2 cut(s)	507, 715
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 278, 501, 502, 824
Bse118I	RCCGGY	1 cut(s)	727
Bse1I	ACTGG	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	2 cut(s)	507, 715
BseGI	GGATG	4 cut(s)	114, 132, 294, 768
BseLI	CCNNNNNNNGG	5 cut(s)	71, 278, 501, 502, 824
BseMII	CTCAG	2 cut(s)	115, 799
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	2 cut(s)	164, 316
BseSI	GKGCMC	2 cut(s)	494, 508
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	6 cut(s)	180, 279, 540, 646, 717, 833
BshFI	GGCC	5 cut(s)	282, 417, 506, 714, 854
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	608
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	5 cut(s)	509, 518, 524, 584, 728
BslI	CCNNNNNNNGG	5 cut(s)	71, 278, 501, 502, 824
BsmAI	GTCTC	2 cut(s)	786, 884
BsmI	GAATGC	1 cut(s)	786
BsnI	GGCC	5 cut(s)	282, 417, 506, 714, 854
BsoBI	CYCGRG	1 cut(s)	709
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	494, 508, 608
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	37, 93
Bsp1720I	GCTNAGC	1 cut(s)	785
BspANI	GGCC	5 cut(s)	282, 417, 506, 714, 854
BspCNI	CTCAG	2 cut(s)	114, 798
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	6 cut(s)	180, 279, 540, 646, 717, 833
BspT107I	GGYRCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	507, 715
BssMI	GATC	2 cut(s)	37, 93
BssNI	GRCGYC	2 cut(s)	48, 288
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	737
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	2 cut(s)	48, 288
BstC8I	GCNNGC	5 cut(s)	163, 184, 729, 733, 835
BstDEI	CTNAG	2 cut(s)	101, 785
BstDSI	CCRYGG	1 cut(s)	715
BstEII	GGTNACC	1 cut(s)	747
BstF5I	GGATG	4 cut(s)	114, 132, 294, 768
BstFNI	CGCG	6 cut(s)	180, 279, 540, 646, 717, 833
BstHHI	GCGC	3 cut(s)	182, 380, 542
BstKTI	GATC	2 cut(s)	40, 96
BstMAI	GTCTC	2 cut(s)	786, 884
BstMBI	GATC	2 cut(s)	37, 93
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 210, 216, 384, 414, 737, 807
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	469
BstPI	GGTNACC	1 cut(s)	747
BstSCI	CCNGG	4 cut(s)	507, 517, 583, 735
BstSLI	GKGCMC	2 cut(s)	494, 508
BstUI	CGCG	6 cut(s)	180, 279, 540, 646, 717, 833
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	692
BsuRI	GGCC	5 cut(s)	282, 417, 506, 714, 854
BtgI	CCRYGG	1 cut(s)	715
BtrI	CACGTC	2 cut(s)	489, 547
BtsCI	GGATG	4 cut(s)	114, 132, 294, 768
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	5 cut(s)	163, 184, 729, 733, 835
CfoI	GCGC	3 cut(s)	182, 380, 542
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	8 cut(s)	19, 244, 415, 504, 505, 521, 587, 712
Cfr42I	CCGCGG	1 cut(s)	718
CseI	GACGC	2 cut(s)	56, 296
Csp6I	GTAC	2 cut(s)	169, 904
CviAII	CATG	3 cut(s)	97, 139, 466
CviQI	GTAC	2 cut(s)	169, 904
DdeI	CTNAG	2 cut(s)	101, 785
DpnI	GATC	2 cut(s)	39, 95
DpnII	GATC	2 cut(s)	37, 93
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	868
Eco47I	GGWCC	4 cut(s)	19, 244, 521, 587
Eco88I	CYCGRG	1 cut(s)	709
Eco91I	GGTNACC	1 cut(s)	747
EcoO109I	RGGNCCY	2 cut(s)	244, 505
EcoO65I	GGTNACC	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	868
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	3 cut(s)	100, 142, 469
FaiI	YATR	6 cut(s)	69, 98, 140, 230, 250, 467
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	96, 138, 465
FauI	CCCGC	4 cut(s)	170, 191, 545, 826
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	9 cut(s)	187, 190, 211, 255, 280, 362, 715, 718, 808
FokI	GGATG	4 cut(s)	101, 119, 281, 775
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	9 cut(s)	187, 190, 211, 255, 280, 362, 715, 718, 808
GlaI	GCGC	3 cut(s)	181, 379, 541
GluI	GCNGC	9 cut(s)	187, 190, 211, 255, 280, 362, 715, 718, 808
HaeIII	GGCC	5 cut(s)	282, 417, 506, 714, 854
HapII	CCGG	5 cut(s)	509, 518, 524, 584, 728
HgaI	GACGC	2 cut(s)	56, 296
HhaI	GCGC	3 cut(s)	182, 380, 542
Hin1I	GRCGYC	2 cut(s)	48, 288
Hin1II	CATG	3 cut(s)	100, 142, 469
Hin6I	GCGC	3 cut(s)	180, 378, 540
HinP1I	GCGC	3 cut(s)	180, 378, 540
HinfI	GANTC	6 cut(s)	527, 707, 722, 757, 857, 892
HpaII	CCGG	5 cut(s)	509, 518, 524, 584, 728
HphI	GGTGA	2 cut(s)	590, 741
Hpy166II	GTNNAC	4 cut(s)	322, 581, 774, 881
Hpy188III	TCNNGA	5 cut(s)	44, 239, 356, 524, 822
Hpy8I	GTNNAC	4 cut(s)	322, 581, 774, 881
Hpy99I	CGWCG	7 cut(s)	131, 204, 290, 490, 548, 637, 640
HpyAV	CCTTC	6 cut(s)	21, 61, 317, 406, 566, 672
HpyCH4IV	ACGT	3 cut(s)	488, 546, 632
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 210, 216, 384, 414, 737, 807
HpyF3I	CTNAG	2 cut(s)	101, 785
HpySE526I	ACGT	3 cut(s)	488, 546, 632
Hsp92I	GRCGYC	2 cut(s)	48, 288
Hsp92II	CATG	3 cut(s)	100, 142, 469
HspAI	GCGC	3 cut(s)	180, 378, 540
Kpn2I	TCCGGA	1 cut(s)	523
KpnI	GGTACC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	727
KroNI	GCCGGC	1 cut(s)	729
KspI	CCGCGG	1 cut(s)	718
Kzo9I	GATC	2 cut(s)	37, 93
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	753
MaeII	ACGT	3 cut(s)	488, 546, 632
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	2 cut(s)	39, 95
MboI	GATC	2 cut(s)	37, 93
MboII	GAAGA	3 cut(s)	112, 115, 307
MhlI	GDGCHC	3 cut(s)	494, 508, 608
MluCI	AATT	1 cut(s)	619
MlyI	GAGTC	6 cut(s)	536, 701, 716, 766, 866, 886
MmeI	TCCRAC	3 cut(s)	510, 740, 840
MreI	CGCCGGCG	1 cut(s)	727
MroI	TCCGGA	1 cut(s)	523
MroNI	GCCGGC	1 cut(s)	727
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	4 cut(s)	87, 165, 658, 717
MspI	CCGG	5 cut(s)	509, 518, 524, 584, 728
MspR9I	CCNGG	4 cut(s)	509, 519, 585, 737
Mva1269I	GAATGC	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	737
MvnI	CGCG	6 cut(s)	180, 279, 540, 646, 717, 833
MwoI	GCNNNNNNNGC	7 cut(s)	186, 210, 216, 384, 414, 737, 807
NaeI	GCCGGC	1 cut(s)	729
NciI	CCSGG	3 cut(s)	509, 519, 585
NdeII	GATC	2 cut(s)	37, 93
NgoMIV	GCCGGC	1 cut(s)	727
NlaIII	CATG	3 cut(s)	100, 142, 469
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	1 cut(s)	747
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PctI	GAATGC	1 cut(s)	786
PdiI	GCCGGC	1 cut(s)	729
PkrI	GCNGC	9 cut(s)	188, 191, 212, 256, 281, 363, 716, 719, 809
PleI	GAGTC	6 cut(s)	535, 701, 716, 765, 865, 886
PpsI	GAGTC	6 cut(s)	535, 701, 716, 765, 865, 886
PpuMI	RGGWCCY	1 cut(s)	244
PscI	ACATGT	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	735
PspEI	GGTNACC	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	735
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	8 cut(s)	19, 244, 415, 504, 505, 521, 587, 712
PspPPI	RGGWCCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	170, 905
RsaNI	GTAC	2 cut(s)	169, 904
RseI	CAYNNNNRTG	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	718
SatI	GCNGC	9 cut(s)	187, 190, 211, 255, 280, 362, 715, 718, 808
Sau3AI	GATC	2 cut(s)	37, 93
Sau96I	GGNCC	8 cut(s)	19, 244, 415, 504, 505, 521, 587, 712
SchI	GAGTC	6 cut(s)	536, 701, 716, 766, 866, 886
ScrFI	CCNGG	4 cut(s)	509, 519, 585, 737
SduI	GDGCHC	3 cut(s)	494, 508, 608
SfaNI	GCATC	1 cut(s)	753
Sfr303I	CCGCGG	1 cut(s)	718
SgrAI	CRCCGGYG	1 cut(s)	727
SgrBI	CCGCGG	1 cut(s)	718
SinI	GGWCC	4 cut(s)	19, 244, 521, 587
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	619
StyD4I	CCNGG	4 cut(s)	507, 517, 583, 735
TaiI	ACGT	3 cut(s)	491, 549, 635
TaqI	TCGA	6 cut(s)	285, 335, 399, 453, 485, 870
TasI	AATT	1 cut(s)	619
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	8 cut(s)	189, 192, 213, 257, 282, 717, 720, 810
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	747
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	747
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	4 cut(s)	19, 244, 521, 587
XceI	RCATGY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.