Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8269179.1

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 824

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8269179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

cggaagccgcagaggttctaagttcgagtctcccatgactatgtccggcttgtctagcttcaacgatgtccgcccggatgtgtctacacactccactcccccgtcggagccctacaagggctacgctctcagcggcaagattatgctgagcgccatcgtcatcctcttcttcgtcgtcattctaatggtgtgtctccacctctacgcgcgatggtacctcctccgcgcgcgccgccgcaacctccgcagaaaccgccgcaaccgccgcaacaacttgatcttccacgaggacgaggccgccgccgccgccccggccgccatgcgcggcctcgacgagtcggtgctcaagtcgctgccggtgttcgtctactactcgaagacccacccggagccgattctggagtgcgccgtgtgcttgtcggagttcgaagagaacgaaacgggtcgggttctcccgaaatgtaagcacagcttccatatcgagtgtatcgacatgtggttccactcgcactccacttgcccgctctgtcggtgcgcggtggagccccaacccgagtccgagaacccgggagatgtggtgttgaatgtgtgcgaacccgagagtaacgaaccgggttcgagctccgggttgtgctccgagtgttccgggtcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

217

Amino Acids

24.31

Weight (kDa)

6.77

Isoelectric Point (pI)

78.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	524
AccI	GTMKAC	2 cut(s)	84, 367
AccII	CGCG	7 cut(s)	207, 209, 226, 228, 230, 325, 537
AcoI	YGGCCR	1 cut(s)	313
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	62, 584
AluBI	AGCT	3 cut(s)	58, 472, 622
AluI	AGCT	3 cut(s)	58, 472, 622
Alw21I	GWGCWC	3 cut(s)	346, 624, 636
Alw26I	GTCTC	2 cut(s)	34, 198
Ama87I	CYCGRG	3 cut(s)	552, 566, 597
AoxI	GGCC	3 cut(s)	295, 313, 326
ApeKI	GCWGC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	214
AspLEI	GCGC	8 cut(s)	153, 209, 228, 230, 232, 325, 408, 537
AsuC2I	CCSGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
AsuII	TTCGAA	1 cut(s)	427
AvaI	CYCGRG	3 cut(s)	552, 566, 597
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	3 cut(s)	112, 547, 624
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	3 cut(s)	346, 624, 636
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	162, 205
BceAI	ACGGC	1 cut(s)	393
BcnI	CCSGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
BcoDI	GTCTC	2 cut(s)	34, 198
BfaI	CTAG	1 cut(s)	55
BfoI	RGCGCY	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	147
Bme1390I	CCNGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
BmeT110I	CYCGRG	3 cut(s)	552, 566, 597
BmiI	GGNNCC	5 cut(s)	109, 216, 391, 501, 544
BmrFI	CCNGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
BsaJI	CCNNGG	2 cut(s)	310, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	495, 525, 562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	310, 566
BseGI	GGATG	2 cut(s)	83, 160
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	138, 143
BsePI	GCGCGC	2 cut(s)	226, 228
BseRI	GAGGAG	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	7 cut(s)	207, 209, 226, 228, 230, 325, 537
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	297, 315, 328
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	3 cut(s)	346, 624, 636
BsiHKCI	CYCGRG	3 cut(s)	552, 566, 597
BsiSI	CCGG	9 cut(s)	46, 75, 312, 357, 387, 567, 612, 625, 646
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	34, 198
BsnI	GGCC	3 cut(s)	297, 315, 328
BsoBI	CYCGRG	3 cut(s)	552, 566, 597
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	5 cut(s)	112, 346, 547, 624, 636
Bsp143I	GATC	1 cut(s)	277
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	297, 315, 328
BspCNI	CTCAG	2 cut(s)	139, 142
BspFNI	CGCG	7 cut(s)	207, 209, 226, 228, 230, 325, 537
BspLI	GGNNCC	5 cut(s)	109, 216, 391, 501, 544
BspT104I	TTCGAA	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	310, 566
BssHII	GCGCGC	2 cut(s)	226, 228
BssMI	GATC	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	171, 424
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	228, 230, 522
BstDEI	CTNAG	3 cut(s)	19, 129, 147
BstF5I	GGATG	2 cut(s)	83, 160
BstFNI	CGCG	7 cut(s)	207, 209, 226, 228, 230, 325, 537
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	8 cut(s)	153, 209, 228, 230, 232, 325, 408, 537
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	34, 198
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	8 cut(s)	73, 310, 385, 565, 566, 611, 624, 645
BstUI	CGCG	7 cut(s)	207, 209, 226, 228, 230, 325, 537
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	384
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	297, 315, 328
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	83, 160
Cac8I	GCNNGC	3 cut(s)	228, 230, 522
CfoI	GCGC	8 cut(s)	153, 209, 228, 230, 232, 325, 408, 537
Cfr10I	RCCGGY	1 cut(s)	356
Cfr9I	CCCGGG	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	35, 320, 494
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	3 cut(s)	19, 129, 147
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	313
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	171, 424
EarI	CTCTTC	2 cut(s)	171, 424
EciI	GGCGGA	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	622
EclXI	CGGCCG	1 cut(s)	313
Eco24I	GRGCYC	3 cut(s)	112, 547, 624
Eco52I	CGGCCG	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	622
Eco88I	CYCGRG	3 cut(s)	552, 566, 597
EcoICRI	GAGCTC	1 cut(s)	622
EcoT38I	GRGCYC	3 cut(s)	112, 547, 624
FaeI	CATG	3 cut(s)	38, 323, 497
FaiI	YATR	6 cut(s)	36, 42, 144, 321, 478, 495
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	3 cut(s)	34, 319, 493
FauI	CCCGC	1 cut(s)	529
FblI	GTMKAC	2 cut(s)	84, 367
FokI	GGATG	2 cut(s)	90, 147
FriOI	GRGCYC	3 cut(s)	112, 547, 624
FspBI	CTAG	1 cut(s)	55
GlaI	GCGC	8 cut(s)	152, 208, 227, 229, 231, 324, 407, 536
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	297, 315, 328
HapII	CCGG	9 cut(s)	46, 75, 312, 357, 387, 567, 612, 625, 646
HhaI	GCGC	8 cut(s)	153, 209, 228, 230, 232, 325, 408, 537
Hin1II	CATG	3 cut(s)	38, 323, 497
Hin6I	GCGC	8 cut(s)	151, 207, 226, 228, 230, 323, 406, 535
HinP1I	GCGC	8 cut(s)	151, 207, 226, 228, 230, 323, 406, 535
HinfI	GANTC	4 cut(s)	27, 336, 395, 555
HpaII	CCGG	9 cut(s)	46, 75, 312, 357, 387, 567, 612, 625, 646
Hpy166II	GTNNAC	2 cut(s)	85, 368
Hpy188I	TCNGA	4 cut(s)	107, 422, 560, 638
Hpy188III	TCNNGA	2 cut(s)	399, 455
Hpy8I	GTNNAC	2 cut(s)	85, 368
Hpy99I	CGWCG	3 cut(s)	107, 177, 336
HpyF3I	CTNAG	3 cut(s)	19, 129, 147
Hsp92II	CATG	3 cut(s)	38, 323, 497
HspAI	GCGC	8 cut(s)	151, 207, 226, 228, 230, 323, 406, 535
KpnI	GGTACC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	5 cut(s)	107, 389, 542, 627, 639
LpnPI	CCDG	9 cut(s)	59, 88, 325, 370, 384, 400, 580, 625, 638
Lsp1109I	GCAGC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	1 cut(s)	279
MauBI	CGCGCGCG	1 cut(s)	226
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	158, 161, 272, 389, 441
MhlI	GDGCHC	5 cut(s)	112, 346, 547, 624, 636
MlyI	GAGTC	3 cut(s)	36, 345, 564
MmeI	TCCRAC	2 cut(s)	85, 400
MnlI	CCTC	9 cut(s)	6, 174, 210, 228, 231, 252, 281, 287, 339
MslI	CAYNNNNRTG	2 cut(s)	39, 183
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	9 cut(s)	46, 75, 312, 357, 387, 567, 612, 625, 646
MspR9I	CCNGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
MvnI	CGCG	7 cut(s)	207, 209, 226, 228, 230, 325, 537
NciI	CCSGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	3 cut(s)	38, 323, 497
NlaIV	GGNNCC	5 cut(s)	109, 216, 391, 501, 544
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	427
PauI	GCGCGC	2 cut(s)	226, 228
PciI	ACATGT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	2 cut(s)	433, 487
PfeI	GAWTC	1 cut(s)	395
PflFI	GACNNNGTC	1 cut(s)	41
PleI	GAGTC	3 cut(s)	35, 344, 563
PpsI	GAGTC	3 cut(s)	35, 344, 563
PscI	ACATGT	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	624
PspN4I	GGNNCC	5 cut(s)	109, 216, 391, 501, 544
PsyI	GACNNNGTC	1 cut(s)	41
PteI	GCGCGC	2 cut(s)	226, 228
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	2 cut(s)	39, 183
SacI	GAGCTC	1 cut(s)	624
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	3 cut(s)	36, 345, 564
ScrFI	CCNGG	8 cut(s)	75, 312, 387, 567, 568, 613, 626, 647
SduI	GDGCHC	5 cut(s)	112, 346, 547, 624, 636
SetI	ASST	7 cut(s)	17, 60, 202, 220, 244, 474, 624
SfuI	TTCGAA	1 cut(s)	427
SmaI	CCCGGG	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	39, 183
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
SspMI	CTAG	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	8 cut(s)	73, 310, 385, 565, 566, 611, 624, 645
TaqI	TCGA	8 cut(s)	25, 331, 375, 427, 481, 490, 618, 651
TfiI	GAWTC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	353
TspMI	CCCGGG	1 cut(s)	566
Tth111I	GACNNNGTC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	497
XmaI	CCCGGG	1 cut(s)	566
XmiI	GTMKAC	2 cut(s)	84, 367
XspI	CTAG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.