Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

45835545 .. 45836801

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCTATGTCCGGCATGTCTGGCTTAAACGAGTCACCCCACCGACCGGATTTTCCTATATACTCCACTCCCCCGTCGGAGCCCTACAAGGGCTACGCTCTCAGCGGCAAGATTATGCTGAGCGCCATCGTCATCCTCTTCTTCGTCGTCATTCTAATGGTGTGTCTCCACCTCTACGCGCGATGGTACCTCCTCCGCGCGCGCCGCCGCAACCTCCGCAGAAACCGCCGCAACCGCCGCAACAACTTGATCTTCCACGAGGACGAGGCCGCCGCCGCCGCCCCGGCCGCCATGCGCGGCCTCGACGAGTCGGTGCTCAAGTCGCTGCCGGTGTTCGTCTACGACTCGAAGACCCACCCGGAGCCGATTCTGGAGTGCGCCGTGTGCTTGTCGGAGTTCGAAGAGAACGAAACGGGTCGGGTTCTCCCGAAATGTAAGCACAGCTTCCATATCGAGTGTATCGACATGTGGTTCCACTCGCACTCCACTTGCCCGCTCTGTCGGTGCGCGGTGGAGCCCCAACCCGAGTCCGAGAACCCGGGAGATGTGGTGTTGAATGTGTGCGAACCCGAGAGTAACGAACCGGGTTCGAGCTCCGGGTTGTGCTCCGAGTGTTCCGGGTCGAGGTCGTTCCGGCAGACGTCGTCGTTTGGGCCGAGAAGGAAACCGATGGATATCGCGGTGCCGAGTCGGCACGAGAGCTTTGGGAGGTCGGAGGCGGAGTCGCCGTCGGGTCAGGCGTTTCGGTCGCCGATGAGTCGGATGCTGTCGTTTAAACGGATGCTGAGCAGAGACAAAAGAAACGGCGGCGTTTCGCCTTCCGGGAATGCCAGTTGTAGCTCCGTGGCCGAGTTGGATATTGAGCGAGGACGAGAAGGGGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

295

Amino Acids

32.9

Weight (kDa)

7.98

Isoelectric Point (pI)

86.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	125 - 168	7.2e-13	Ring finger domain
zf-RING_11	PF17123	125 - 154	4.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	125 - 167	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	126 - 168	8.8e-08	RING-H2 zinc finger domain
zf-C3HC4	PF00097	126 - 167	2.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	644
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	186, 682
AccBSI	CCGCTC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	8 cut(s)	179, 181, 198, 200, 202, 297, 509, 680
AcoI	YGGCCR	2 cut(s)	285, 846
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	46, 89, 624
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	556
AluBI	AGCT	4 cut(s)	444, 594, 702, 840
AluI	AGCT	4 cut(s)	444, 594, 702, 840
Alw21I	GWGCWC	3 cut(s)	318, 596, 608
Alw26I	GTCTC	2 cut(s)	170, 786
Ama87I	CYCGRG	3 cut(s)	524, 538, 569
AoxI	GGCC	5 cut(s)	267, 285, 298, 653, 846
ApeKI	GCWGC	1 cut(s)	325
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	8 cut(s)	125, 181, 200, 202, 204, 297, 380, 509
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
AsuHPI	GGTGA	1 cut(s)	27
AsuII	TTCGAA	1 cut(s)	399
AvaI	CYCGRG	3 cut(s)	524, 538, 569
BanI	GGYRCC	2 cut(s)	186, 682
BanII	GRGCYC	3 cut(s)	84, 519, 596
BauI	CACGAG	2 cut(s)	257, 695
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	3 cut(s)	318, 596, 608
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	134, 177, 664
BceAI	ACGGC	3 cut(s)	365, 712, 820
BcnI	CCSGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
BcoDI	GTCTC	2 cut(s)	170, 786
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	2 cut(s)	284, 691
BlpI	GCTNAGC	2 cut(s)	119, 785
Bme1390I	CCNGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
BmeT110I	CYCGRG	3 cut(s)	524, 538, 569
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	6 cut(s)	81, 188, 363, 473, 516, 684
BmrFI	CCNGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
BmsI	GCATC	2 cut(s)	753, 771
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	2 cut(s)	119, 785
Bpu14I	TTCGAA	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	282, 538, 843
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	8 cut(s)	467, 497, 534, 564, 707, 713, 737, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 89, 624
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	674
BseDI	CCNNGG	3 cut(s)	282, 538, 843
BseGI	GGATG	3 cut(s)	132, 768, 786
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	3 cut(s)	46, 89, 624
BseMII	CTCAG	4 cut(s)	110, 115, 776, 873
BseNI	ACTGG	1 cut(s)	831
BsePI	GCGCGC	2 cut(s)	198, 200
BseRI	GAGGAG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	8 cut(s)	179, 181, 198, 200, 202, 297, 509, 680
Bsh1285I	CGRYCG	3 cut(s)	47, 288, 749
BshFI	GGCC	5 cut(s)	269, 287, 300, 655, 848
BshNI	GGYRCC	2 cut(s)	186, 682
BsiEI	CGRYCG	3 cut(s)	47, 288, 749
BsiHKAI	GWGCWC	3 cut(s)	318, 596, 608
BsiHKCI	CYCGRG	3 cut(s)	524, 538, 569
BslI	CCNNNNNNNGG	3 cut(s)	46, 89, 624
BsmAI	GTCTC	2 cut(s)	170, 786
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	5 cut(s)	269, 287, 300, 655, 848
BsoBI	CYCGRG	3 cut(s)	524, 538, 569
Bsp119I	TTCGAA	1 cut(s)	399
Bsp1286I	GDGCHC	5 cut(s)	84, 318, 519, 596, 608
Bsp143I	GATC	1 cut(s)	249
Bsp1720I	GCTNAGC	2 cut(s)	119, 785
BspANI	GGCC	5 cut(s)	269, 287, 300, 655, 848
BspCNI	CTCAG	4 cut(s)	111, 114, 777, 874
BspFNI	CGCG	8 cut(s)	179, 181, 198, 200, 202, 297, 509, 680
BspLI	GGNNCC	6 cut(s)	81, 188, 363, 473, 516, 684
BspT104I	TTCGAA	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	186, 682
BsrBI	CCGCTC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	831
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	3 cut(s)	282, 538, 843
BssHII	GCGCGC	2 cut(s)	198, 200
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	641
BssSI	CACGAG	2 cut(s)	257, 695
Bst2BI	CACGAG	2 cut(s)	257, 695
Bst6I	CTCTTC	2 cut(s)	143, 396
BstACI	GRCGYC	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	200, 202, 494
BstDEI	CTNAG	4 cut(s)	101, 119, 785, 882
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	3 cut(s)	132, 768, 786
BstFNI	CGCG	8 cut(s)	179, 181, 198, 200, 202, 297, 509, 680
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	8 cut(s)	125, 181, 200, 202, 204, 297, 380, 509
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	2 cut(s)	170, 786
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	3 cut(s)	47, 288, 749
BstNSI	RCATGY	2 cut(s)	19, 469
BstSCI	CCNGG	8 cut(s)	282, 357, 537, 538, 583, 596, 617, 821
BstUI	CGCG	8 cut(s)	179, 181, 198, 200, 202, 297, 509, 680
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	356
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	269, 287, 300, 655, 848
BtgI	CCRYGG	1 cut(s)	843
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	132, 768, 786
Cac8I	GCNNGC	3 cut(s)	200, 202, 494
CfoI	GCGC	8 cut(s)	125, 181, 200, 202, 204, 297, 380, 509
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	653
Cfr9I	CCCGGG	1 cut(s)	538
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	16, 292, 466
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	101, 119, 785, 882
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DraI	TTTAAA	1 cut(s)	775
EaeI	YGGCCR	2 cut(s)	285, 846
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	143, 396
EarI	CTCTTC	2 cut(s)	143, 396
EciI	GGCGGA	1 cut(s)	734
Ecl136II	GAGCTC	1 cut(s)	594
EclXI	CGGCCG	1 cut(s)	285
Eco24I	GRGCYC	3 cut(s)	84, 519, 596
Eco32I	GATATC	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	594
Eco88I	CYCGRG	3 cut(s)	524, 538, 569
EcoICRI	GAGCTC	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	676
EcoT38I	GRGCYC	3 cut(s)	84, 519, 596
FaeI	CATG	3 cut(s)	19, 295, 469
FaiI	YATR	8 cut(s)	8, 17, 59, 61, 116, 293, 450, 467
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	15, 291, 465
FauI	CCCGC	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	339
FokI	GGATG	3 cut(s)	119, 775, 793
FriOI	GRGCYC	3 cut(s)	84, 519, 596
GlaI	GCGC	8 cut(s)	124, 180, 199, 201, 203, 296, 379, 508
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	5 cut(s)	269, 287, 300, 655, 848
HhaI	GCGC	8 cut(s)	125, 181, 200, 202, 204, 297, 380, 509
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	19, 295, 469
Hin6I	GCGC	8 cut(s)	123, 179, 198, 200, 202, 295, 378, 507
HinP1I	GCGC	8 cut(s)	123, 179, 198, 200, 202, 295, 378, 507
HinfI	GANTC	8 cut(s)	32, 308, 344, 367, 527, 688, 722, 757
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	6 cut(s)	79, 394, 532, 610, 715, 762
Hpy188III	TCNNGA	2 cut(s)	371, 427
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	6 cut(s)	79, 149, 308, 646, 649, 733
HpyAV	CCTTC	3 cut(s)	654, 828, 869
HpyCH4IV	ACGT	1 cut(s)	641
HpyF3I	CTNAG	4 cut(s)	101, 119, 785, 882
HpySE526I	ACGT	1 cut(s)	641
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	3 cut(s)	19, 295, 469
HspAI	GCGC	8 cut(s)	123, 179, 198, 200, 202, 295, 378, 507
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	6 cut(s)	79, 361, 514, 599, 611, 845
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	2 cut(s)	753, 771
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	2 cut(s)	33, 575
MalI	GATC	1 cut(s)	251
MauBI	CGCGCGCG	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	1 cut(s)	249
MboII	GAAGA	5 cut(s)	130, 133, 244, 361, 413
MhlI	GDGCHC	5 cut(s)	84, 318, 519, 596, 608
MlyI	GAGTC	7 cut(s)	41, 317, 338, 536, 697, 731, 766
MmeI	TCCRAC	5 cut(s)	57, 372, 693, 740, 834
MseI	TTAA	2 cut(s)	26, 774
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	105
MspR9I	CCNGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
MssI	GTTTAAAC	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	832
MvnI	CGCG	8 cut(s)	179, 181, 198, 200, 202, 297, 509, 680
NciI	CCSGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	3 cut(s)	19, 295, 469
NlaIV	GGNNCC	6 cut(s)	81, 188, 363, 473, 516, 684
NmeAIII	GCCGAG	3 cut(s)	681, 711, 874
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	2 cut(s)	19, 469
NspV	TTCGAA	1 cut(s)	399
PauI	GCGCGC	2 cut(s)	198, 200
PciI	ACATGT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	4 cut(s)	405, 459, 653, 737
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	367
PflFI	GACNNNGTC	1 cut(s)	643
PfoI	TCCNGGA	1 cut(s)	821
PleI	GAGTC	7 cut(s)	40, 316, 338, 535, 696, 730, 765
PmeI	GTTTAAAC	1 cut(s)	775
PpsI	GAGTC	7 cut(s)	40, 316, 338, 535, 696, 730, 765
PscI	ACATGT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	596
PspN4I	GGNNCC	6 cut(s)	81, 188, 363, 473, 516, 684
PspPI	GGNCC	1 cut(s)	653
PsyI	GACNNNGTC	1 cut(s)	643
PteI	GCGCGC	2 cut(s)	198, 200
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	26, 774
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	7 cut(s)	41, 317, 338, 536, 697, 731, 766
ScrFI	CCNGG	8 cut(s)	284, 359, 539, 540, 585, 598, 619, 823
SduI	GDGCHC	5 cut(s)	84, 318, 519, 596, 608
SfaNI	GCATC	2 cut(s)	753, 771
SfuI	TTCGAA	1 cut(s)	399
SmaI	CCCGGG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	8 cut(s)	282, 357, 537, 538, 583, 596, 617, 821
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	7 cut(s)	303, 347, 399, 453, 462, 590, 623
TaqII	GACCGA	1 cut(s)	735
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	26, 774
Tru9I	TTAA	2 cut(s)	26, 774
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	33
TspGWI	ACGGA	2 cut(s)	793, 832
TspMI	CCCGGG	1 cut(s)	538
Tth111I	GACNNNGTC	1 cut(s)	643
XceI	RCATGY	2 cut(s)	19, 469
XmaI	CCCGGG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.