Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0011130

Physical Location & Seq

Genomic Coordinates Forward (+)

61274 .. 61492

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atggatatcgcggtgccgagtcggcacgagagctttgggaggtcggaggcggagtcgccgtcgggtcaggcgtttcggtcgccgatgagtcggatgctgtcgtttaaacggatgctgagcagagacaaaagaaacggcggcgtttcgccttccgggaatgccagttgtagctccgtggccgagttggatattgagcgaggacgagaaggggctgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051301 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

72

Amino Acids

7.79

Weight (kDa)

7.98

Isoelectric Point (pI)

91.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16720
fragaria_vesca	FvH4_4g18630
malus_domestica	MD13G1165000.v1.1 MD16G1164700.v1.1
prunus_persica	Prupe.1G124000_v2.0.a1
pyrus_communis	pycom13g14110 pycom16g13940
rosa_chinensis	RchiOBHm_Chr4g0423331
rosa_laevigata	RLG00000007568
rosa_multiflora	Rmu_co8269179.1_g000001 Rmu_sc0001290.1_g000014 Rmu_sc0001290.1_g000015 Rmu_sc0005307.1_g000003
rosa_roxburghii	Rroxscaffold_5G00365520
rosa_rugosa	Rorug04G0186600
rosa_samantha	Rh4AG245800 Rh4BG251200 Rh4CG259600 Rh4DG246100
rosa_wichuraiana	Rw4G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AccII	CGCG	1 cut(s)	11
AciI	CCGC	3 cut(s)	11, 50, 138
AcoI	YGGCCR	1 cut(s)	177
AluBI	AGCT	2 cut(s)	33, 171
AluI	AGCT	2 cut(s)	33, 171
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	43, 151
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	139
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	84, 102
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 44, 68, 74
Bse1I	ACTGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	99, 117
BseMII	CTCAG	2 cut(s)	107, 204
BseNI	ACTGG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	179
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	3 cut(s)	11, 50, 138
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	108, 205
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	116, 213
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	99, 117
BstFNI	CGCG	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	117
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	99, 117
CviJI	RGCY	4 cut(s)	33, 171, 179, 212
CviKI_1	RGCY	4 cut(s)	33, 171, 179, 212
DdeI	CTNAG	2 cut(s)	116, 213
DraI	TTTAAA	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	2 cut(s)	106, 124
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	153
HinfI	GANTC	3 cut(s)	19, 53, 88
HpaII	CCGG	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	46, 93
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	159, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	116, 213
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	3 cut(s)	53, 166, 175
LweI	GCATC	2 cut(s)	84, 102
MlyI	GAGTC	3 cut(s)	28, 62, 97
MmeI	TCCRAC	3 cut(s)	24, 71, 165
MnlI	CCTC	3 cut(s)	33, 40, 191
MseI	TTAA	1 cut(s)	105
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
MssI	GTTTAAAC	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	163
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	2 cut(s)	42, 205
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	3 cut(s)	27, 61, 96
PmeI	GTTTAAAC	1 cut(s)	106
PpsI	GAGTC	3 cut(s)	27, 61, 96
PspN4I	GGNNCC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	139
SchI	GAGTC	3 cut(s)	28, 62, 97
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	3 cut(s)	35, 44, 173
SfaNI	GCATC	2 cut(s)	84, 102
SsiI	CCGC	3 cut(s)	11, 50, 138
StyD4I	CCNGG	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	66
TauI	GCSGC	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TspGWI	ACGGA	2 cut(s)	124, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.