Rmu_sc0005307.1_g000003

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005307.1
Physical Location & Seq
Forward (+)
17142 .. 19289
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005307.1_g000003.1.cds

Sequence Viewer

Length: 1218 bp
atgagtgttcgggtttggctcctttccgtgcatggagtcgtttgtcctctcaatggcggccagttgaggcgcagatcgagttgtgcggcggctgcggtggttgttcgtagtgagacatacggcggtggccaccagacatgcagcagtggtgcggactacgtgttgcacaggcaaattcccactagcagacaagaattcggtgagtccaagtctccaactgagagagaactagacaggaaactagtaatttcgacccgagtaagggccagggaagtaatttcccctcctccgcgtcaaccctgcggaagccgcagaggttctaagttcgagtctcccatgactatgtccggcttgtctagcttcaacgatgtccgcccggatgtgtctacacactccactcccccgtcggagccctacaagggctacgctctcagcggcaagattatgctgagcgccatcgtcatcctcttcttcgtcgtcattctaatggtgtgtctccacctctacgcgcgatggtacctcctccgcgcccgccgccgcaacctccgcagaaaccgccgcaaccgccgcaacaacttgatcttccacgaggacgaggccgccgccgccgccccggccgccatgcgcggcctcgacgagtcggtgctcaagtcgctgccggtgttcgtctacgactcgaagacccacccggagccgattctggagtgcgccgtgtgcttgtcggagttcgaagagaacgaaacgggtcgggttctcccgaaatgtaagcacagcttccatatcgagtgtatcgacatgtggttccactcgcactccacttgcccgctctgtcggtgcgcggtggagccccaacccgagtccgagaacccgggagatgtggtgttgaatgtgtgcgaacccgagagtaacgaaccgggttcgagctccgggttgtgctccgagtgttccgggtcgaggtcgttccggcagacgtcgtcgtttgggccgagaaggaaaccgatggatatcgcggtgccgagtcggcacgagagctttgggaggtcggaggcggagtcgccgtcgggtcaggcgtttcggtcgccgatgagtcggatgctgtcgtttaaacggatgctgagcagagacaaaagaaacggcggcgtttcgccttccgggaatgccagttgtagctccgtggccgagttggatattgagcgaggacgagaaggggctgagtga

Protein Analysis

405

Amino Acids

44.92

Weight (kDa)

9.02

Isoelectric Point (pI)

80.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 974
Acc65I GGTACC 1 cut(s) 516
AccB1I GGYRCC 2 cut(s) 516, 1012
AccBSI CCGCTC 1 cut(s) 826
AccI GTMKAC 2 cut(s) 386, 669
AccII CGCG 7 cut(s) 292, 509, 511, 528, 627, 839, 1010
AcoI YGGCCR 4 cut(s) 58, 127, 615, 1176
AcsI RAATTY 2 cut(s) 174, 194
AcyI GRCGYC 1 cut(s) 971
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 5 cut(s) 53, 261, 262, 419, 954
AflIII ACRYGT 2 cut(s) 159, 795
AgsI TTSAA 2 cut(s) 364, 886
AhlI ACTAGT 1 cut(s) 241
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 5 cut(s) 360, 774, 924, 1032, 1170
AluI AGCT 5 cut(s) 360, 774, 924, 1032, 1170
Alw21I GWGCWC 3 cut(s) 648, 926, 938
Alw26I GTCTC 5 cut(s) 107, 216, 336, 500, 1116
Ama87I CYCGRG 4 cut(s) 255, 854, 868, 899
AoxI GGCC 8 cut(s) 58, 127, 264, 597, 615, 628, 983, 1176
ApeKI GCWGC 3 cut(s) 92, 141, 655
ApoI RAATTY 2 cut(s) 174, 194
Asp718I GGTACC 1 cut(s) 516
AspLEI GCGC 7 cut(s) 72, 455, 511, 530, 627, 710, 839
AspS9I GGNCC 2 cut(s) 264, 983
AsuC2I CCSGG 9 cut(s) 377, 614, 689, 869, 870, 915, 928, 949, 1153
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 729
AvaI CYCGRG 4 cut(s) 255, 854, 868, 899
BalI TGGCCA 1 cut(s) 129
BanI GGYRCC 2 cut(s) 516, 1012
BanII GRGCYC 3 cut(s) 414, 849, 926
BauI CACGAG 2 cut(s) 587, 1025
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 3 cut(s) 648, 926, 938
BbvI GCAGC 3 cut(s) 79, 153, 642
BccI CCATC 3 cut(s) 464, 507, 994
BceAI ACGGC 4 cut(s) 136, 695, 1042, 1150
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 9 cut(s) 377, 614, 689, 869, 870, 915, 928, 949, 1153
BcoDI GTCTC 5 cut(s) 107, 216, 336, 500, 1116
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 4 cut(s) 183, 230, 242, 357
BfoI RGCGCY 1 cut(s) 456
BglI GCCNNNNNGGC 2 cut(s) 614, 1021
BlpI GCTNAGC 2 cut(s) 449, 1115
BmeT110I CYCGRG 4 cut(s) 255, 854, 868, 899
BmgT120I GGNCC 2 cut(s) 264, 983
BmiI GGNNCC 7 cut(s) 20, 411, 518, 693, 803, 846, 1014
BmsI GCATC 2 cut(s) 1083, 1101
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 722
Bpu1102I GCTNAGC 2 cut(s) 449, 1115
Bpu14I TTCGAA 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 9 cut(s) 377, 614, 689, 869, 870, 915, 928, 949, 1153
BsaAI YACGTR 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 1004
BsaHI GRCGYC 1 cut(s) 971
BsaJI CCNNGG 4 cut(s) 267, 612, 868, 1173
BsaXI ACNNNNNCTCC 8 cut(s) 797, 827, 864, 894, 1037, 1043, 1067, 1073
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 261, 262, 419, 954
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 2 cut(s) 61, 1161
Bse8I GATNNNNATC 1 cut(s) 1004
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 4 cut(s) 267, 612, 868, 1173
BseGI GGATG 4 cut(s) 385, 462, 1098, 1116
BseJI GATNNNNATC 1 cut(s) 1004
BseLI CCNNNNNNNGG 5 cut(s) 53, 261, 262, 419, 954
BseMII CTCAG 5 cut(s) 210, 440, 445, 1106, 1203
BseNI ACTGG 2 cut(s) 61, 1161
BseRI GAGGAG 2 cut(s) 276, 512
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 79, 153, 642
Bsh1236I CGCG 7 cut(s) 292, 509, 511, 528, 627, 839, 1010
Bsh1285I CGRYCG 2 cut(s) 618, 1079
BshFI GGCC 8 cut(s) 60, 129, 266, 599, 617, 630, 985, 1178
BshNI GGYRCC 2 cut(s) 516, 1012
BsiEI CGRYCG 2 cut(s) 618, 1079
BsiHKAI GWGCWC 3 cut(s) 648, 926, 938
BsiHKCI CYCGRG 4 cut(s) 255, 854, 868, 899
BslI CCNNNNNNNGG 5 cut(s) 53, 261, 262, 419, 954
BsmAI GTCTC 5 cut(s) 107, 216, 336, 500, 1116
BsmI GAATGC 1 cut(s) 1162
BsnI GGCC 8 cut(s) 60, 129, 266, 599, 617, 630, 985, 1178
BsoBI CYCGRG 4 cut(s) 255, 854, 868, 899
Bsp119I TTCGAA 1 cut(s) 729
Bsp1286I GDGCHC 5 cut(s) 414, 648, 849, 926, 938
Bsp143I GATC 2 cut(s) 74, 579
Bsp1720I GCTNAGC 2 cut(s) 449, 1115
BspANI GGCC 8 cut(s) 60, 129, 266, 599, 617, 630, 985, 1178
BspCNI CTCAG 5 cut(s) 211, 441, 444, 1107, 1204
BspFNI CGCG 7 cut(s) 292, 509, 511, 528, 627, 839, 1010
BspLI GGNNCC 7 cut(s) 20, 411, 518, 693, 803, 846, 1014
BspT104I TTCGAA 1 cut(s) 729
BspT107I GGYRCC 2 cut(s) 516, 1012
BsrBI CCGCTC 1 cut(s) 826
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 2 cut(s) 61, 1161
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 4 cut(s) 267, 612, 868, 1173
BssMI GATC 2 cut(s) 74, 579
BssNI GRCGYC 1 cut(s) 971
BssSI CACGAG 2 cut(s) 587, 1025
Bst2BI CACGAG 2 cut(s) 587, 1025
Bst2UI CCWGG 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 473, 726
BstACI GRCGYC 1 cut(s) 971
BstBAI YACGTR 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 532, 824
BstDEI CTNAG 6 cut(s) 219, 321, 431, 449, 1115, 1212
BstDSI CCRYGG 1 cut(s) 1173
BstF5I GGATG 4 cut(s) 385, 462, 1098, 1116
BstFNI CGCG 7 cut(s) 292, 509, 511, 528, 627, 839, 1010
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 7 cut(s) 72, 455, 511, 530, 627, 710, 839
BstKTI GATC 2 cut(s) 77, 582
BstMAI GTCTC 5 cut(s) 107, 216, 336, 500, 1116
BstMBI GATC 2 cut(s) 74, 579
BstMCI CGRYCG 2 cut(s) 618, 1079
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 2 cut(s) 141, 799
BstUI CGCG 7 cut(s) 292, 509, 511, 528, 627, 839, 1010
BstV1I GCAGC 3 cut(s) 79, 153, 642
BstV2I GAAGAC 1 cut(s) 686
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 8 cut(s) 60, 129, 266, 599, 617, 630, 985, 1178
BtgI CCRYGG 1 cut(s) 1173
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 4 cut(s) 385, 462, 1098, 1116
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 532, 824
CfoI GCGC 7 cut(s) 72, 455, 511, 530, 627, 710, 839
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 2 cut(s) 264, 983
Cfr9I CCCGGG 1 cut(s) 868
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 517
CviAII CATG 5 cut(s) 32, 138, 337, 622, 796
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 6 cut(s) 219, 321, 431, 449, 1115, 1212
DpnI GATC 2 cut(s) 76, 581
DpnII GATC 2 cut(s) 74, 579
DraI TTTAAA 1 cut(s) 1105
EaeI YGGCCR 4 cut(s) 58, 127, 615, 1176
EagI CGGCCG 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 473, 726
EarI CTCTTC 2 cut(s) 473, 726
EciI GGCGGA 2 cut(s) 362, 1064
Ecl136II GAGCTC 1 cut(s) 924
EclXI CGGCCG 1 cut(s) 615
Eco24I GRGCYC 3 cut(s) 414, 849, 926
Eco32I GATATC 1 cut(s) 1006
Eco52I CGGCCG 1 cut(s) 615
Eco53kI GAGCTC 1 cut(s) 924
Eco88I CYCGRG 4 cut(s) 255, 854, 868, 899
EcoICRI GAGCTC 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 1006
EcoT38I GRGCYC 3 cut(s) 414, 849, 926
FaeI CATG 5 cut(s) 35, 141, 340, 625, 799
FaiI YATR 9 cut(s) 33, 118, 139, 338, 344, 446, 623, 780, 797
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FatI CATG 5 cut(s) 31, 137, 336, 621, 795
FauI CCCGC 2 cut(s) 539, 831
FblI GTMKAC 2 cut(s) 386, 669
FokI GGATG 4 cut(s) 392, 449, 1105, 1123
FriOI GRGCYC 3 cut(s) 414, 849, 926
FspBI CTAG 4 cut(s) 183, 230, 242, 357
GlaI GCGC 7 cut(s) 71, 454, 510, 529, 626, 709, 838
GsuI CTGGAG 1 cut(s) 722
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 8 cut(s) 60, 129, 266, 599, 617, 630, 985, 1178
HgaI GACGC 1 cut(s) 281
HhaI GCGC 7 cut(s) 72, 455, 511, 530, 627, 710, 839
Hin1I GRCGYC 1 cut(s) 971
Hin1II CATG 5 cut(s) 35, 141, 340, 625, 799
Hin6I GCGC 7 cut(s) 70, 453, 509, 528, 625, 708, 837
HinP1I GCGC 7 cut(s) 70, 453, 509, 528, 625, 708, 837
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 296, 387, 670
Hpy188I TCNGA 6 cut(s) 409, 724, 862, 940, 1045, 1092
Hpy188III TCNNGA 2 cut(s) 701, 757
Hpy8I GTNNAC 3 cut(s) 296, 387, 670
Hpy99I CGWCG 6 cut(s) 409, 479, 638, 976, 979, 1063
HpyAV CCTTC 3 cut(s) 984, 1158, 1199
HpyCH4IV ACGT 2 cut(s) 159, 971
HpyCH4V TGCA 3 cut(s) 31, 141, 166
HpyF3I CTNAG 6 cut(s) 219, 321, 431, 449, 1115, 1212
HpySE526I ACGT 2 cut(s) 159, 971
Hsp92I GRCGYC 1 cut(s) 971
Hsp92II CATG 5 cut(s) 35, 141, 340, 625, 799
HspAI GCGC 7 cut(s) 70, 453, 509, 528, 625, 708, 837
KpnI GGTACC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 74, 579
LmnI GCTCC 7 cut(s) 24, 409, 691, 844, 929, 941, 1175
Lsp1109I GCAGC 3 cut(s) 79, 153, 642
LweI GCATC 2 cut(s) 1083, 1101
MaeI CTAG 4 cut(s) 183, 230, 242, 357
MaeII ACGT 2 cut(s) 159, 971
MaeIII GTNAC 1 cut(s) 905
MalI GATC 2 cut(s) 76, 581
MbiI CCGCTC 1 cut(s) 826
MboI GATC 2 cut(s) 74, 579
MboII GAAGA 5 cut(s) 460, 463, 574, 691, 743
MhlI GDGCHC 5 cut(s) 414, 648, 849, 926, 938
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 4 cut(s) 174, 194, 246, 276
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 9 cut(s) 45, 212, 338, 647, 668, 866, 1027, 1061, 1096
MmeI TCCRAC 6 cut(s) 239, 387, 702, 1023, 1070, 1164
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MseI TTAA 1 cut(s) 1104
MslI CAYNNNNRTG 2 cut(s) 341, 485
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 435
MssI GTTTAAAC 1 cut(s) 1105
Mva1269I GAATGC 1 cut(s) 1162
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 7 cut(s) 292, 509, 511, 528, 627, 839, 1010
NciI CCSGG 9 cut(s) 377, 614, 689, 869, 870, 915, 928, 949, 1153
NdeII GATC 2 cut(s) 74, 579
NlaIII CATG 5 cut(s) 35, 141, 340, 625, 799
NlaIV GGNNCC 7 cut(s) 20, 411, 518, 693, 803, 846, 1014
NmeAIII GCCGAG 3 cut(s) 1011, 1041, 1204
NspI RCATGY 2 cut(s) 141, 799
NspV TTCGAA 1 cut(s) 729
PciI ACATGT 1 cut(s) 795
PcsI WCGNNNNNNNCGW 4 cut(s) 735, 789, 983, 1067
PctI GAATGC 1 cut(s) 1162
PfeI GAWTC 1 cut(s) 697
PflFI GACNNNGTC 2 cut(s) 343, 973
PfoI TCCNGGA 1 cut(s) 1151
PleI GAGTC 9 cut(s) 44, 211, 337, 646, 668, 865, 1026, 1060, 1095
PmeI GTTTAAAC 1 cut(s) 1105
PpsI GAGTC 9 cut(s) 44, 211, 337, 646, 668, 865, 1026, 1060, 1095
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 7 cut(s) 20, 411, 518, 693, 803, 846, 1014
PspPI GGNCC 2 cut(s) 264, 983
PsyI GACNNNGTC 2 cut(s) 343, 973
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 2 cut(s) 341, 485
SacI GAGCTC 1 cut(s) 926
SaqAI TTAA 1 cut(s) 1104
Sau3AI GATC 2 cut(s) 74, 579
Sau96I GGNCC 2 cut(s) 264, 983
SchI GAGTC 9 cut(s) 45, 212, 338, 647, 668, 866, 1027, 1061, 1096
SduI GDGCHC 5 cut(s) 414, 648, 849, 926, 938
SfaNI GCATC 2 cut(s) 1083, 1101
SfuI TTCGAA 1 cut(s) 729
SmaI CCCGGG 1 cut(s) 870
SmiMI CAYNNNNRTG 2 cut(s) 341, 485
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 4 cut(s) 174, 194, 246, 276
SspMI CTAG 4 cut(s) 183, 230, 242, 357
SstI GAGCTC 1 cut(s) 926
TaiI ACGT 2 cut(s) 162, 974
TaqII GACCGA 1 cut(s) 1065
TasI AATT 4 cut(s) 174, 194, 246, 276
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 1 cut(s) 1104
Tru9I TTAA 1 cut(s) 1104
TscAI CASTG 1 cut(s) 151
TseI GCWGC 3 cut(s) 92, 141, 655
TspGWI ACGGA 3 cut(s) 16, 1123, 1162
TspMI CCCGGG 1 cut(s) 868
TspRI CASTG 1 cut(s) 151
Tth111I GACNNNGTC 2 cut(s) 343, 973
XapI RAATTY 2 cut(s) 174, 194
XceI RCATGY 2 cut(s) 141, 799
XmaI CCCGGG 1 cut(s) 868
XmiI GTMKAC 2 cut(s) 386, 669
XspI CTAG 4 cut(s) 183, 230, 242, 357
ZraI GACGTC 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.