AT3G18080

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6191461 .. 6194452
2992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18080.1

Sequence Viewer

Length: 1539 bp
ATGAGACACCTTAGCTCACCTCCATGGCCTCTCCTCCTTCTCCTCCTCCTCTCTTCTTTCACCTCCGGCGAATCCTCTCTGTCCGCAGAAAAAAACAAATTGCACACCGGTGGTCTCAGTAGACAGAGTTTTCCTAAAGGATTCGTGTTTGGAACCGCCACGTCAGCTTATCAAGTCGAAGGCGAGACTCATCAAGACGGTCGTGGCCCAAGCATTTGGGATGCCTTCGTCAAGATTCCTGGGAAGATCGCCAAGAATGCCACGGCTGAGATAACAGTGGACCAGTATCACCGTTACAAGGAAGATGTGGATTTGATGAAGAAACTGAACTTCGATGCTTACAGATTTTCCATTTCATGGTCCAGGATATTCCCTGAGGGAAGTGGTAAAGTCAACTGGAAAGGAGTTGCTTATTACAATAGATTGATTGATTACATGGTTCAAAAAGGGATTACACCTTATGCTAATCTGTACCACTACGATCTTCCATTGGCTTTGGAAAACAAGTATAAAGGCTTGCTTGGTAGACAAGTAGTGAAAGATTTTGCGGATTACGCTGAGTTTTGTTACAAGACATTTGGTGATAGAGTGAAAAATTGGATGACGTTCAACGAGCCGCGTGTGGTAGCTGCTTTAGGTTATGATAATGGTATTTTCGCACCGGGTAGATGCTCAAAAGCATTTGGAAATTGCACTGAAGGAAACTCCGCGACAGAGCCATACATAGTTACTCATCACCTTATCTTGGCCCACGCAGCAGCAGTCCAAAGATACCGCAAATATTACCAAGCGAAACAAAAGGGAAGGGTTGGGATACTTTTAGATTTCGTTTGGTATGAGCCGCTTACTAGAAGTAAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATGGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACATTGTGAAAGAGAGGCTTCCAAAGTTCACGGAGAAAGAAGTGAAAATGGTGAAAGGTTCCATAGATTTTGTGGGAATAAACCAATACACGACTTATTACATGTCCGAACCACATCCCACCACCAAACCTAAGGATTTGGGTTATCAACAAGATTGGAATGTGGAATTTGGCTTTGCTAAGTTGGGGAAGCCAATAGGTCCAAGGGCTTACTCGTCTTGGTTATACAACGTACCATGGGGAATGTACAAGGCCTTGATGTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCACGAGAATCAAGTATTACAAAGATTACTTAACCAACCTTAAGAAAGCTAGGGATGATGGAGCCAATGTGGTTGGATATTTTGCGTGGTCATTGCTAGATAATTTCGAATGGTTATCAGGATATACTTCAAGGTTTGGGATCGTTTATGTTGATTACAAAACATTGAAGAGGTACCCCAAGATGTCTGCTCAGTGGTTTAAGCAACTTCTGAAACGAAACAACAAATGA

Protein Analysis

512

Amino Acids

58.98

Weight (kDa)

9.44

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 41 - 511 3.3e-160 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1482
AccB1I GGYRCC 1 cut(s) 1482
AccB7I CCANNNNNTGG 1 cut(s) 357
AccI GTMKAC 2 cut(s) 121, 526
AccII CGCG 2 cut(s) 619, 710
AciI CCGC 7 cut(s) 84, 156, 548, 617, 708, 775, 842
AclI AACGTT 2 cut(s) 1225, 1281
AclWI GGATC 2 cut(s) 1240, 1457
AcsI RAATTY 1 cut(s) 1118
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 4 cut(s) 473, 1185, 1199, 1484
AfiI CCNNNNNNNGG 3 cut(s) 298, 357, 745
AflII CTTAAG 1 cut(s) 1349
AflIII ACRYGT 1 cut(s) 1053
AgeI ACCGGT 1 cut(s) 107
AgsI TTSAA 4 cut(s) 443, 610, 1440, 1477
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 2 cut(s) 238, 362
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 6 cut(s) 15, 167, 629, 875, 1292, 1358
AluI AGCT 6 cut(s) 15, 167, 629, 875, 1292, 1358
Alw26I GTCTC 3 cut(s) 119, 179, 882
AlwI GGATC 2 cut(s) 1240, 1457
Ama87I CYCGRG 1 cut(s) 1273
AoxI GGCC 4 cut(s) 26, 205, 747, 1203
ApeKI GCWGC 4 cut(s) 629, 755, 758, 872
ApoI RAATTY 1 cut(s) 1118
AsiGI ACCGGT 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 1482
AspS9I GGNCC 5 cut(s) 206, 280, 360, 748, 1151
AsuC2I CCSGG 3 cut(s) 663, 1274, 1275
AsuHPI GGTGA 7 cut(s) 9, 52, 281, 593, 728, 905, 1015
AsuII TTCGAA 1 cut(s) 1416
AvaI CYCGRG 1 cut(s) 1273
AvaII GGWCC 3 cut(s) 280, 360, 1151
AxyI CCTNAGG 2 cut(s) 375, 1083
BanI GGYRCC 1 cut(s) 1482
BarI GAAGNNNNNNTAC 2 cut(s) 1211, 1243
BauI CACGAG 1 cut(s) 1312
BbvI GCAGC 4 cut(s) 616, 767, 770, 884
BccI CCATC 2 cut(s) 897, 1361
BceAI ACGGC 2 cut(s) 279, 1246
BciT130I CCWGG 2 cut(s) 240, 364
BciVI GTATCC 2 cut(s) 807, 945
BcnI CCSGG 3 cut(s) 663, 1274, 1275
BcoDI GTCTC 3 cut(s) 119, 179, 882
BfaI CTAG 4 cut(s) 849, 1289, 1359, 1406
BfrI CTTAAG 1 cut(s) 1349
BfuI GTATCC 2 cut(s) 807, 945
BisI GCNGC 6 cut(s) 617, 630, 756, 759, 842, 873
BlsI GCNGC 6 cut(s) 618, 631, 757, 760, 843, 874
Bme1390I CCNGG 5 cut(s) 240, 364, 663, 1274, 1275
Bme18I GGWCC 3 cut(s) 280, 360, 1151
BmeT110I CYCGRG 1 cut(s) 1273
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 5 cut(s) 206, 280, 360, 748, 1151
BmiI GGNNCC 4 cut(s) 154, 1012, 1372, 1484
BmrFI CCNGG 5 cut(s) 240, 364, 663, 1274, 1275
BmsI GCATC 3 cut(s) 211, 325, 659
Bpu10I CCTNAGC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 1416
BpuEI CTTGAG 1 cut(s) 1278
BpuMI CCSGG 3 cut(s) 663, 1274, 1275
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 6 cut(s) 23, 239, 261, 1154, 1187, 1273
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 1362, 1392
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 357, 745
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 283, 401
Bse21I CCTNAGG 2 cut(s) 375, 1083
Bse3DI GCAATG 1 cut(s) 1400
BseBI CCWGG 2 cut(s) 240, 364
BseDI CCNNGG 6 cut(s) 23, 239, 261, 1154, 1187, 1273
BseGI GGATG 6 cut(s) 226, 606, 908, 1066, 1273, 1369
BseLI CCNNNNNNNGG 3 cut(s) 298, 357, 745
BseMI GCAATG 1 cut(s) 1400
BseMII CTCAG 5 cut(s) 130, 258, 366, 549, 1514
BseNI ACTGG 2 cut(s) 283, 401
BseRI GAGGAG 4 cut(s) 23, 32, 35, 38
BseXI GCAGC 4 cut(s) 616, 767, 770, 884
Bsh1236I CGCG 2 cut(s) 619, 710
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 4 cut(s) 28, 207, 749, 1205
BshNI GGYRCC 1 cut(s) 1482
BshTI ACCGGT 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 1273
BsiSI CCGG 4 cut(s) 66, 108, 662, 1274
BslI CCNNNNNNNGG 3 cut(s) 298, 357, 745
BsmAI GTCTC 3 cut(s) 119, 179, 882
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 4 cut(s) 28, 207, 749, 1205
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 1273
Bsp119I TTCGAA 1 cut(s) 1416
Bsp1407I TGTACA 1 cut(s) 1197
Bsp143I GATC 4 cut(s) 246, 481, 1245, 1449
Bsp19I CCATGG 2 cut(s) 23, 1187
BspACI CCGC 7 cut(s) 84, 156, 548, 617, 708, 775, 842
BspANI GGCC 4 cut(s) 28, 207, 749, 1205
BspCNI CTCAG 5 cut(s) 129, 259, 367, 550, 1513
BspFNI CGCG 2 cut(s) 619, 710
BspLI GGNNCC 4 cut(s) 154, 1012, 1372, 1484
BspPI GGATC 2 cut(s) 1240, 1457
BspT104I TTCGAA 1 cut(s) 1416
BspT107I GGYRCC 1 cut(s) 1482
BspTI CTTAAG 1 cut(s) 1349
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 1400
BsrFI RCCGGY 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 1197
BsrI ACTGG 2 cut(s) 283, 401
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 6 cut(s) 23, 239, 261, 1154, 1187, 1273
BssMI GATC 4 cut(s) 246, 481, 1245, 1449
BssSI CACGAG 1 cut(s) 1312
BssT1I CCWWGG 3 cut(s) 23, 1154, 1187
Bst2BI CACGAG 1 cut(s) 1312
Bst2UI CCWGG 2 cut(s) 240, 364
Bst4CI ACNGT 4 cut(s) 200, 277, 293, 1262
Bst6I CTCTTC 2 cut(s) 58, 1472
BstAFI CTTAAG 1 cut(s) 1349
BstAUI TGTACA 1 cut(s) 1197
BstBI TTCGAA 1 cut(s) 1416
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 8 cut(s) 11, 116, 267, 375, 558, 1083, 1131, 1500
BstDSI CCRYGG 3 cut(s) 23, 261, 1187
BstF5I GGATG 6 cut(s) 226, 606, 908, 1066, 1273, 1369
BstFNI CGCG 2 cut(s) 619, 710
BstKTI GATC 4 cut(s) 249, 484, 1248, 1452
BstMAI GTCTC 3 cut(s) 119, 179, 882
BstMBI GATC 4 cut(s) 246, 481, 1245, 1449
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 5 cut(s) 164, 257, 554, 755, 881
BstNI CCWGG 2 cut(s) 240, 364
BstNSI RCATGY 1 cut(s) 1057
BstSCI CCNGG 5 cut(s) 238, 362, 661, 1272, 1273
BstUI CGCG 2 cut(s) 619, 710
BstV1I GCAGC 4 cut(s) 616, 767, 770, 884
BstXI CCANNNNNNTGG 1 cut(s) 216
Bsu36I CCTNAGG 2 cut(s) 375, 1083
BsuI GTATCC 2 cut(s) 807, 945
BsuRI GGCC 4 cut(s) 28, 207, 749, 1205
BtgI CCRYGG 3 cut(s) 23, 261, 1187
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 6 cut(s) 226, 606, 908, 1066, 1273, 1369
BtsIMutI CAGTG 3 cut(s) 282, 693, 1508
Cac8I GCNNGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 5 cut(s) 206, 280, 360, 748, 1151
Cfr9I CCCGGG 1 cut(s) 1273
Csp6I GTAC 4 cut(s) 472, 1184, 1198, 1483
CspAI ACCGGT 1 cut(s) 107
CviAII CATG 6 cut(s) 24, 357, 436, 1054, 1188, 1304
CviQI GTAC 4 cut(s) 472, 1184, 1198, 1483
DdeI CTNAG 8 cut(s) 11, 116, 267, 375, 558, 1083, 1131, 1500
DpnI GATC 4 cut(s) 248, 483, 1247, 1451
DpnII GATC 4 cut(s) 246, 481, 1245, 1449
Eam1104I CTCTTC 2 cut(s) 58, 1472
EarI CTCTTC 2 cut(s) 58, 1472
Eco130I CCWWGG 3 cut(s) 23, 1154, 1187
Eco147I AGGCCT 1 cut(s) 1205
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 280, 360, 1151
Eco57I CTGAAG 1 cut(s) 717
Eco81I CCTNAGG 2 cut(s) 375, 1083
Eco88I CYCGRG 1 cut(s) 1273
EcoRII CCWGG 2 cut(s) 238, 362
EcoT14I CCWWGG 3 cut(s) 23, 1154, 1187
ErhI CCWWGG 3 cut(s) 23, 1154, 1187
FaeI CATG 6 cut(s) 27, 360, 439, 1057, 1191, 1307
FalI AAGNNNNNCTT 4 cut(s) 504, 536, 954, 986
FatI CATG 6 cut(s) 23, 356, 435, 1053, 1187, 1303
FblI GTMKAC 2 cut(s) 121, 526
Fnu4HI GCNGC 6 cut(s) 617, 630, 756, 759, 842, 873
FokI GGATG 6 cut(s) 233, 613, 915, 1053, 1280, 1376
Fsp4HI GCNGC 6 cut(s) 617, 630, 756, 759, 842, 873
FspBI CTAG 4 cut(s) 849, 1289, 1359, 1406
GluI GCNGC 6 cut(s) 617, 630, 756, 759, 842, 873
HaeIII GGCC 4 cut(s) 28, 207, 749, 1205
HapII CCGG 4 cut(s) 66, 108, 662, 1274
Hin1II CATG 6 cut(s) 27, 360, 439, 1057, 1191, 1307
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 71, 141, 187, 235, 1317
HpaII CCGG 4 cut(s) 66, 108, 662, 1274
HphI GGTGA 7 cut(s) 9, 52, 281, 593, 728, 905, 1015
Hpy166II GTNNAC 5 cut(s) 122, 280, 394, 527, 981
Hpy188I TCNGA 4 cut(s) 902, 1060, 1255, 1521
Hpy188III TCNNGA 3 cut(s) 194, 232, 1428
Hpy8I GTNNAC 5 cut(s) 122, 280, 394, 527, 981
HpyAV CCTTC 6 cut(s) 47, 173, 235, 692, 798, 1213
HpyCH4III ACNGT 4 cut(s) 200, 277, 293, 1262
HpyCH4IV ACGT 5 cut(s) 161, 605, 1182, 1225, 1281
HpyCH4V TGCA 4 cut(s) 103, 693, 872, 949
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 257, 554, 755, 881
HpyF3I CTNAG 8 cut(s) 11, 116, 267, 375, 558, 1083, 1131, 1500
HpySE526I ACGT 5 cut(s) 161, 605, 1182, 1225, 1281
Hsp92II CATG 6 cut(s) 27, 360, 439, 1057, 1191, 1307
KpnI GGTACC 1 cut(s) 1486
Kzo9I GATC 4 cut(s) 246, 481, 1245, 1449
LmnI GCTCC 1 cut(s) 1370
Lsp1109I GCAGC 4 cut(s) 616, 767, 770, 884
LweI GCATC 3 cut(s) 211, 325, 659
MaeI CTAG 4 cut(s) 849, 1289, 1359, 1406
MaeII ACGT 5 cut(s) 161, 605, 1182, 1225, 1281
MaeIII GTNAC 5 cut(s) 293, 566, 727, 1226, 1282
MalI GATC 4 cut(s) 248, 483, 1247, 1451
MboI GATC 4 cut(s) 246, 481, 1245, 1449
MboII GAAGA 6 cut(s) 45, 256, 314, 331, 476, 1489
MluCI AATT 5 cut(s) 98, 595, 688, 1118, 1411
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 1363
MseI TTAA 3 cut(s) 1340, 1350, 1509
MslI CAYNNNNRTG 2 cut(s) 22, 108
MspCI CTTAAG 1 cut(s) 1349
MspI CCGG 4 cut(s) 66, 108, 662, 1274
MspR9I CCNGG 5 cut(s) 240, 364, 663, 1274, 1275
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 2 cut(s) 240, 364
MvnI CGCG 2 cut(s) 619, 710
MwoI GCNNNNNNNGC 5 cut(s) 164, 257, 554, 755, 881
NciI CCSGG 3 cut(s) 663, 1274, 1275
NcoI CCATGG 2 cut(s) 23, 1187
NdeII GATC 4 cut(s) 246, 481, 1245, 1449
NlaIII CATG 6 cut(s) 27, 360, 439, 1057, 1191, 1307
NlaIV GGNNCC 4 cut(s) 154, 1012, 1372, 1484
NspI RCATGY 1 cut(s) 1057
NspV TTCGAA 1 cut(s) 1416
OliI CACNNNNGTG 1 cut(s) 108
PceI AGGCCT 1 cut(s) 1205
PciI ACATGT 1 cut(s) 1053
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 4 cut(s) 71, 141, 235, 1317
PflMI CCANNNNNTGG 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 6 cut(s) 618, 631, 757, 760, 843, 874
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 1053
Psp1406I AACGTT 2 cut(s) 1225, 1281
Psp6I CCWGG 2 cut(s) 238, 362
PspGI CCWGG 2 cut(s) 238, 362
PspN4I GGNNCC 4 cut(s) 154, 1012, 1372, 1484
PspPI GGNCC 5 cut(s) 206, 280, 360, 748, 1151
RsaI GTAC 4 cut(s) 473, 1185, 1199, 1484
RsaNI GTAC 4 cut(s) 472, 1184, 1198, 1483
RseI CAYNNNNRTG 2 cut(s) 22, 108
SaqAI TTAA 3 cut(s) 1340, 1350, 1509
SatI GCNGC 6 cut(s) 617, 630, 756, 759, 842, 873
Sau3AI GATC 4 cut(s) 246, 481, 1245, 1449
Sau96I GGNCC 5 cut(s) 206, 280, 360, 748, 1151
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 5 cut(s) 240, 364, 663, 1274, 1275
SfaNI GCATC 3 cut(s) 211, 325, 659
SfuI TTCGAA 1 cut(s) 1416
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 3 cut(s) 280, 360, 1151
SmaI CCCGGG 1 cut(s) 1275
SmiMI CAYNNNNRTG 2 cut(s) 22, 108
SmlI CTYRAG 2 cut(s) 1293, 1349
SmoI CTYRAG 2 cut(s) 1293, 1349
Sse9I AATT 5 cut(s) 98, 595, 688, 1118, 1411
SseBI AGGCCT 1 cut(s) 1205
SsiI CCGC 7 cut(s) 84, 156, 548, 617, 708, 775, 842
SspI AATATT 1 cut(s) 782
SspMI CTAG 4 cut(s) 849, 1289, 1359, 1406
StuI AGGCCT 1 cut(s) 1205
StyD4I CCNGG 5 cut(s) 238, 362, 661, 1272, 1273
StyI CCWWGG 3 cut(s) 23, 1154, 1187
TaaI ACNGT 4 cut(s) 200, 277, 293, 1262
TaiI ACGT 5 cut(s) 164, 608, 1185, 1228, 1284
TaqI TCGA 3 cut(s) 177, 333, 1416
TasI AATT 5 cut(s) 98, 595, 688, 1118, 1411
TatI WGTACW 1 cut(s) 1197
TauI GCSGC 2 cut(s) 619, 844
TfiI GAWTC 4 cut(s) 71, 141, 235, 1317
Tru1I TTAA 3 cut(s) 1340, 1350, 1509
Tru9I TTAA 3 cut(s) 1340, 1350, 1509
TscAI CASTG 3 cut(s) 282, 700, 1508
TseI GCWGC 4 cut(s) 629, 755, 758, 872
TspDTI ATGAA 3 cut(s) 332, 345, 1232
TspGWI ACGGA 1 cut(s) 998
TspMI CCCGGG 1 cut(s) 1273
TspRI CASTG 3 cut(s) 282, 700, 1508
Van91I CCANNNNNTGG 1 cut(s) 357
Vha464I CTTAAG 1 cut(s) 1349
VpaK11BI GGWCC 3 cut(s) 280, 360, 1151
XapI RAATTY 1 cut(s) 1118
XceI RCATGY 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XmaI CCCGGG 1 cut(s) 1273
XmiI GTMKAC 2 cut(s) 121, 526
XspI CTAG 4 cut(s) 849, 1289, 1359, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.