Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002320.1

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

102950 .. 105252

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002320.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgagaactacaccattgctggtcttgttgctcagtcttgttggtgtgatccagtacgttgcgggtgcagctgggcacaatggagctcctttccctgaggccgagggcgggctgagggccagttttcccaaggggtttgtgttcggaacggcgacgtctgcttatcaagtcgaaggcatggccaacaaggaaggtcgtggacctagcatttgggataccttcgttaaaatcccagatgacaagaacggagtgcctattggtcctagggcatattcttcttggctctaccaagtaccatggggtttgtacaagtgtataacgtacataaaagaacattatgggaatccacctgtgattttgtccgaaaacggcatggataaccccggaaaccagactcttccaaaggcattgcacgataccaataggatcaactactacagaagctatctggagcaactgaagaaggcagttgatgagggagccaatgtggtaggctactttgcttggtcattgctcgacaactttgaatggagattgggttacacttcaaggtttggcatagtgtatgttgacttcaccaccctcaagagatacccaaagatgtctgccttctggttcaagaaacttcttaccaaaaagaagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

215

Amino Acids

24.21

Weight (kDa)

9.42

Isoelectric Point (pI)

17.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AciI	CCGC	2 cut(s)	62, 108
AclWI	GGATC	2 cut(s)	43, 434
AcoI	YGGCCR	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	4 cut(s)	56, 294, 308, 323
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	527, 549, 619
AluBI	AGCT	3 cut(s)	71, 86, 444
AluI	AGCT	3 cut(s)	71, 86, 444
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	43, 434
AoxI	GGCC	3 cut(s)	99, 117, 180
ApeKI	GCWGC	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspA2I	CCTAGG	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	117, 200, 260
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	200, 260
AvrII	CCTAGG	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	78
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
Bbv12I	GWGCWC	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	80
BceAI	ACGGC	2 cut(s)	165, 385
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	384
BfaI	CTAG	2 cut(s)	204, 264
BfmI	CTRYAG	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	69
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	2 cut(s)	200, 260
BmgT120I	GGNCC	3 cut(s)	117, 200, 260
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	5 cut(s)	102, 129, 263, 296, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	471, 501, 523, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	52, 120
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	3 cut(s)	14, 407, 509
BseDI	CCNNGG	5 cut(s)	102, 129, 263, 296, 382
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	3 cut(s)	14, 407, 509
BseMII	CTCAG	3 cut(s)	46, 87, 104
BseNI	ACTGG	2 cut(s)	52, 120
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	101, 119, 182
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	3 cut(s)	101, 119, 182
Bsp1286I	GDGCHC	2 cut(s)	78, 88
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	48, 426
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	2 cut(s)	62, 108
BspANI	GGCC	3 cut(s)	101, 119, 182
BspCNI	CTCAG	3 cut(s)	45, 88, 105
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	43, 434
BsrDI	GCAATG	3 cut(s)	14, 407, 509
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	52, 120
BssECI	CCNNGG	5 cut(s)	102, 129, 263, 296, 382
BssMI	GATC	2 cut(s)	48, 426
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	3 cut(s)	129, 263, 296
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	32, 96, 113
BstDSI	CCRYGG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	51, 429
BstMBI	GATC	2 cut(s)	48, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 158
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	80
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	101, 119, 182
BtgI	CCRYGG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	117, 200, 260
Csp6I	GTAC	4 cut(s)	55, 293, 307, 322
CviAII	CATG	3 cut(s)	178, 297, 373
CviQI	GTAC	4 cut(s)	55, 293, 307, 322
DdeI	CTNAG	3 cut(s)	32, 96, 113
DpnI	GATC	2 cut(s)	50, 428
DpnII	GATC	2 cut(s)	48, 426
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	3 cut(s)	129, 263, 296
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	200, 260
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	479
Eco81I	CCTNAGG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	86
EcoT14I	CCWWGG	3 cut(s)	129, 263, 296
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	3 cut(s)	129, 263, 296
FaeI	CATG	3 cut(s)	181, 300, 376
FaiI	YATR	9 cut(s)	179, 271, 298, 317, 326, 339, 374, 560, 567
FatI	CATG	3 cut(s)	177, 296, 372
FauI	CCCGC	2 cut(s)	55, 101
Fnu4HI	GCNGC	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	204, 264
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	101, 119, 182
HapII	CCGG	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	181, 300, 376
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	2 cut(s)	343, 394
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	200, 571
Hpy188I	TCNGA	2 cut(s)	146, 364
Hpy188III	TCNNGA	3 cut(s)	449, 586, 619
Hpy8I	GTNNAC	2 cut(s)	200, 571
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	5 cut(s)	167, 185, 229, 457, 619
HpyCH4IV	ACGT	3 cut(s)	57, 155, 320
HpyCH4V	TGCA	2 cut(s)	68, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 158
HpyF3I	CTNAG	3 cut(s)	32, 96, 113
HpySE526I	ACGT	3 cut(s)	57, 155, 320
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	181, 300, 376
Kzo9I	GATC	2 cut(s)	48, 426
LmnI	GCTCC	4 cut(s)	83, 91, 451, 479
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	2 cut(s)	204, 264
MaeII	ACGT	3 cut(s)	57, 155, 320
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	2 cut(s)	50, 428
MboI	GATC	2 cut(s)	48, 426
MboII	GAAGA	3 cut(s)	267, 389, 472
MhlI	GDGCHC	2 cut(s)	78, 88
MlsI	TGGCCA	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	91, 97, 108, 469, 593
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	68, 158
NciI	CCSGG	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	48, 426
NlaIII	CATG	3 cut(s)	181, 300, 376
NlaIV	GGNNCC	1 cut(s)	481
NmeAIII	GCCGAG	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	3 cut(s)	117, 200, 260
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	4 cut(s)	56, 294, 308, 323
RsaNI	GTAC	4 cut(s)	55, 293, 307, 322
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	48, 426
Sau96I	GGNCC	3 cut(s)	117, 200, 260
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	78, 88
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	2 cut(s)	200, 260
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SsiI	CCGC	2 cut(s)	62, 108
SspMI	CTAG	2 cut(s)	204, 264
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	3 cut(s)	129, 263, 296
TaiI	ACGT	3 cut(s)	60, 158, 323
TaqI	TCGA	2 cut(s)	171, 516
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseI	GCWGC	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	200, 260
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	2 cut(s)	204, 264
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.