Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266963.1

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 637

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgccttgttctgcaggcattactccttatgcaaatttgtatcactatgatcttcccctagcacttgagcaaaagtacctggggttgttaagtgacaaagtagtgaaggattttgcggattacgcagaattttgcttcaaaacatttggagacagagtgaagaactggatgacattcaatgagcctagagtggtagctgctgctggctatgacattggactgaatcctccggcacggtgctctaaagcttatggaaattgcgcagctgggaattcaggaactgaaccttacattgctgctcatcatttgattttgtcacatgcagctgctgttcagagataccgcgaaaagtatcagaaaacacaaaaaggaaggattggtattgtcttggattttcactggtatgagcctcttaccagatcaaaggctgacagatatgcagctcaaagggcaagagactttcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

155

Amino Acids

17.56

Weight (kDa)

9.0

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	262
AccII	CGCG	1 cut(s)	345
AciI	CCGC	2 cut(s)	116, 343
AcsI	RAATTY	3 cut(s)	34, 128, 271
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	139, 178
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	197, 248, 266, 326, 443
AluI	AGCT	5 cut(s)	197, 248, 266, 326, 443
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	2 cut(s)	144, 450
AlwNI	CAGNNNCTG	2 cut(s)	281, 329
ApeKI	GCWGC	7 cut(s)	197, 200, 263, 296, 323, 326, 440
ApoI	RAATTY	3 cut(s)	34, 128, 271
AspLEI	GCGC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	7 cut(s)	184, 187, 275, 283, 313, 335, 452
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	144, 450
BfaI	CTAG	2 cut(s)	59, 186
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	7 cut(s)	198, 201, 264, 297, 324, 327, 441
BlsI	GCNGC	7 cut(s)	199, 202, 265, 298, 325, 328, 442
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse1I	ACTGG	2 cut(s)	170, 404
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	170, 404
BseXI	GCAGC	7 cut(s)	184, 187, 275, 283, 313, 335, 452
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	144, 450
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	49, 419
BspACI	CCGC	2 cut(s)	116, 343
BspFNI	CGCG	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	170, 404
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	2 cut(s)	49, 419
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	16, 205
BstF5I	GGATG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	2 cut(s)	52, 422
BstMAI	GTCTC	2 cut(s)	144, 450
BstMBI	GATC	2 cut(s)	49, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 449
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	7 cut(s)	184, 187, 275, 283, 313, 335, 452
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	16, 205
CaiI	CAGNNNCTG	2 cut(s)	281, 329
CfoI	GCGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	9 cut(s)	184, 197, 207, 248, 266, 326, 409, 428, 443
CviKI_1	RGCY	9 cut(s)	184, 197, 207, 248, 266, 326, 409, 428, 443
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	2 cut(s)	51, 421
DpnII	GATC	2 cut(s)	49, 419
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	323
FaiI	YATR	7 cut(s)	30, 48, 210, 252, 321, 405, 438
FatI	CATG	1 cut(s)	319
Fnu4HI	GCNGC	7 cut(s)	198, 201, 264, 297, 324, 327, 441
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	7 cut(s)	198, 201, 264, 297, 324, 327, 441
FspBI	CTAG	2 cut(s)	59, 186
FspI	TGCGCA	1 cut(s)	262
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	7 cut(s)	198, 201, 264, 297, 324, 327, 441
GsaI	CCCAGC	1 cut(s)	270
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	336, 357
Hpy188III	TCNNGA	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	100, 366
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	14, 32, 323, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 449
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	49, 419
LpnPI	CCDG	9 cut(s)	65, 92, 151, 189, 243, 252, 261, 385, 430
Lsp1109I	GCAGC	7 cut(s)	184, 187, 275, 283, 313, 335, 452
MaeI	CTAG	2 cut(s)	59, 186
MaeIII	GTNAC	2 cut(s)	92, 315
MalI	GATC	2 cut(s)	51, 421
MboI	GATC	2 cut(s)	49, 419
MboII	GAAGA	2 cut(s)	44, 172
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	4 cut(s)	34, 128, 256, 271
MnlI	CCTC	2 cut(s)	237, 420
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	266, 326
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	122, 449
NdeII	GATC	2 cut(s)	49, 419
NlaIII	CATG	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	92, 315
NsbI	TGCGCA	1 cut(s)	262
NspI	RCATGY	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	7 cut(s)	199, 202, 265, 298, 325, 328, 442
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	281, 329
PvuII	CAGCTG	2 cut(s)	266, 326
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	7 cut(s)	198, 201, 264, 297, 324, 327, 441
Sau3AI	GATC	2 cut(s)	49, 419
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	7 cut(s)	81, 199, 250, 268, 289, 328, 445
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	34, 128, 256, 271
SsiI	CCGC	2 cut(s)	116, 343
SspMI	CTAG	2 cut(s)	59, 186
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	237
TasI	AATT	4 cut(s)	34, 128, 256, 271
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	404
TseFI	GTSAC	2 cut(s)	92, 315
TseI	GCWGC	7 cut(s)	197, 200, 263, 296, 323, 326, 440
Tsp45I	GTSAC	2 cut(s)	92, 315
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	404
XapI	RAATTY	3 cut(s)	34, 128, 271
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	59, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.