Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025325.1

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

40363 .. 41185

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025325.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggtgaagggctcaatggactttgtaggcatcaaccagtacaccgcttactacatgtatgatccacatcaaaataaaacaaaaccaaatgccttgggataccagaatgactggaatgccggatttgcttatgagaagaatggagtgcctattggtcctagggcgtactcttcttggctctaccaagtaccatggggtatgtacaagtgtgtaacctacataaaagagcattatgggaacccgcctgtgattttatctgaaaacggcatggataaccccggaaaccagacgcttccaaaggcattgctcgataccaataggatcaacttctacagaagctatttggagcaactgaagaaggcagttgatgagggagccaatgtggtaggctactttgcttggtcattgctcgacaactttgaatggagatcgggtttcacttcaaggtttggcatagtctatgttgacttcaccaccctcaagagatacccaaagacgtcagcctactggttccagaaacttcttaccaaaaagaagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

180

Amino Acids

20.97

Weight (kDa)

9.3

Isoelectric Point (pI)

17.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AciI	CCGC	2 cut(s)	45, 242
AclWI	GGATC	2 cut(s)	56, 329
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	497
AfaI	GTAC	4 cut(s)	41, 167, 189, 203
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	422, 444
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
AlwI	GGATC	2 cut(s)	56, 329
AspA2I	CCTAGG	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	16, 463
AvaII	GGWCC	1 cut(s)	155
AvrII	CCTAGG	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	92
BlnI	CCTAGG	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	3 cut(s)	239, 376, 512
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	497
BsaJI	CCNNGG	4 cut(s)	93, 158, 191, 277
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 418, 448
Bse1I	ACTGG	3 cut(s)	37, 116, 512
Bse3DI	GCAATG	2 cut(s)	302, 404
Bse8I	GATNNNNATC	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	93, 158, 191, 277
BseJI	GATNNNNATC	1 cut(s)	66
BseMI	GCAATG	2 cut(s)	302, 404
BseNI	ACTGG	3 cut(s)	37, 116, 512
BsiSI	CCGG	2 cut(s)	120, 279
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	61, 321, 428
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	2 cut(s)	45, 242
BspLI	GGNNCC	3 cut(s)	239, 376, 512
BspPI	GGATC	2 cut(s)	56, 329
BsrDI	GCAATG	2 cut(s)	302, 404
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	3 cut(s)	37, 116, 512
BssECI	CCNNGG	4 cut(s)	93, 158, 191, 277
BssMI	GATC	3 cut(s)	61, 321, 428
BssNI	GRCGYC	1 cut(s)	497
BssT1I	CCWWGG	3 cut(s)	93, 158, 191
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	191
BstKTI	GATC	3 cut(s)	64, 324, 431
BstMBI	GATC	3 cut(s)	61, 321, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	4 cut(s)	40, 166, 188, 202
CviAII	CATG	3 cut(s)	55, 192, 268
CviJI	RGCY	6 cut(s)	12, 178, 339, 377, 390, 503
CviKI_1	RGCY	6 cut(s)	12, 178, 339, 377, 390, 503
CviQI	GTAC	4 cut(s)	40, 166, 188, 202
DpnI	GATC	3 cut(s)	63, 323, 430
DpnII	GATC	3 cut(s)	61, 321, 428
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	3 cut(s)	93, 158, 191
Eco24I	GRGCYC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	374
EcoT14I	CCWWGG	3 cut(s)	93, 158, 191
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	3 cut(s)	93, 158, 191
FaeI	CATG	3 cut(s)	58, 195, 271
FatI	CATG	3 cut(s)	54, 191, 267
FauI	CCCGC	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	159
HapII	CCGG	2 cut(s)	120, 279
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	58, 195, 271
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	120, 279
HphI	GGTGA	2 cut(s)	16, 463
Hpy166II	GTNNAC	2 cut(s)	42, 466
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	481, 514
Hpy8I	GTNNAC	2 cut(s)	42, 466
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	3 cut(s)	58, 195, 271
Kzo9I	GATC	3 cut(s)	61, 321, 428
LmnI	GCTCC	2 cut(s)	346, 374
LpnPI	CCDG	9 cut(s)	50, 97, 116, 133, 258, 292, 299, 493, 527
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	63, 323, 430
MboI	GATC	3 cut(s)	61, 321, 428
MboII	GAAGA	3 cut(s)	148, 162, 367
MhlI	GDGCHC	1 cut(s)	14
MnlI	CCTC	2 cut(s)	364, 488
MspI	CCGG	2 cut(s)	120, 279
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	61, 321, 428
NlaIII	CATG	3 cut(s)	58, 195, 271
NlaIV	GGNNCC	3 cut(s)	239, 376, 512
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	239, 376, 512
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	4 cut(s)	41, 167, 189, 203
RsaNI	GTAC	4 cut(s)	40, 166, 188, 202
Sau3AI	GATC	3 cut(s)	61, 321, 428
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	4 cut(s)	218, 341, 449, 500
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	331
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SsiI	CCGC	2 cut(s)	45, 242
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	3 cut(s)	93, 158, 191
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	309, 411
TatI	WGTACW	2 cut(s)	39, 201
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	58
XmaJI	CCTAGG	1 cut(s)	158
XspI	CTAG	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.