Rh5CG480100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001264
Physical Location & Seq
Forward (+)
66939271 .. 66939624
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG480100.1

Sequence Viewer

Length: 354 bp
ATGGAGTCAAGAAGGTCAAGTGCCGCCAACCAACAGCGGCCTGATCCCGCTACGACCACCGCCGGACCACCCACAATGACGCTCCGCCACCGGCTCGGGACCGCCGTCGTCATCCTTCCGCCCTCCCCGGCACGCCATAGAGAGACACCACCCGATTCCACAGTCACCTTCCCCATATCGTACACCGACAGCCCAACCCAGGTCGGGTTAATCCGATCCAAGCCAAGCCCAGCCGCCACGACCTCATCACCTCCAGTCCGCCTCCTAGCCCGTGCTACCCCATCAAGCCGTCGACCCTGCATCCATGGCAGTCCAGTCGCCGTTCCAGCCCTTTCCACACCCAACCCCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.26

Weight (kDa)

11.71

Isoelectric Point (pI)

90.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AciI CCGC 9 cut(s) 24, 37, 48, 60, 85, 102, 119, 234, 259
AclWI GGATC 2 cut(s) 38, 210
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 199, 204, 347
AjnI CCWGG 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 38, 210
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 65, 99
AsuC2I CCSGG 2 cut(s) 128, 348
AsuHPI GGTGA 2 cut(s) 157, 240
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 2 cut(s) 65, 99
BccI CCATC 1 cut(s) 289
BceAI ACGGC 3 cut(s) 89, 273, 305
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 2 cut(s) 128, 348
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 266, 352
BisI GCNGC 3 cut(s) 24, 38, 234
BlsI GCNGC 3 cut(s) 25, 39, 235
Bme1390I CCNGG 3 cut(s) 128, 200, 348
Bme18I GGWCC 2 cut(s) 65, 99
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 65, 99
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 3 cut(s) 128, 200, 348
BmsI GCATC 1 cut(s) 309
BoxI GACNNNNGTC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 128, 348
BsaJI CCNNGG 4 cut(s) 126, 198, 304, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 204, 347
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 254, 314
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 126, 198, 304, 346
BseGI GGATG 2 cut(s) 111, 300
BseLI CCNNNNNNNGG 3 cut(s) 199, 204, 347
BseNI ACTGG 2 cut(s) 254, 314
BseYI CCCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 4 cut(s) 63, 91, 128, 348
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 3 cut(s) 199, 204, 347
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 2 cut(s) 43, 215
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 9 cut(s) 24, 37, 48, 60, 85, 102, 119, 234, 259
BspANI GGCC 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 2 cut(s) 38, 210
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 2 cut(s) 254, 314
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 4 cut(s) 126, 198, 304, 346
BssMI GATC 2 cut(s) 43, 215
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 111, 300
BstKTI GATC 2 cut(s) 46, 218
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 43, 215
BstMWI GCNNNNNNNGC 2 cut(s) 306, 326
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 126, 198, 346
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 111, 300
Cac8I GCNNGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 65, 99
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 305
CviQI GTAC 1 cut(s) 181
DpnI GATC 2 cut(s) 45, 217
DpnII GATC 2 cut(s) 43, 215
EciI GGCGGA 3 cut(s) 74, 108, 248
Eco130I CCWWGG 1 cut(s) 304
Eco47I GGWCC 2 cut(s) 65, 99
Eco88I CYCGRG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 1 cut(s) 308
FaiI YATR 3 cut(s) 138, 176, 306
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 24, 38, 234
FokI GGATG 2 cut(s) 98, 287
Fsp4HI GCNGC 3 cut(s) 24, 38, 234
FspBI CTAG 2 cut(s) 266, 352
GluI GCNGC 3 cut(s) 24, 38, 234
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 40
HapII CCGG 4 cut(s) 63, 91, 128, 348
HgaI GACGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 308
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 2 cut(s) 5, 155
HpaII CCGG 4 cut(s) 63, 91, 128, 348
HphI GGTGA 2 cut(s) 157, 240
Hpy166II GTNNAC 2 cut(s) 183, 293
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 9, 97
Hpy8I GTNNAC 2 cut(s) 183, 293
Hpy99I CGWCG 2 cut(s) 110, 294
HpyAV CCTTC 3 cut(s) 6, 125, 178
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 326
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 43, 215
LmnI GCTCC 1 cut(s) 87
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 266, 352
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 45, 217
MboI GATC 2 cut(s) 43, 215
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 4 cut(s) 133, 253, 261, 272
MseI TTAA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 4 cut(s) 63, 91, 128, 348
MspR9I CCNGG 3 cut(s) 128, 200, 348
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 306, 326
NciI CCSGG 2 cut(s) 128, 348
NcoI CCATGG 1 cut(s) 304
NdeII GATC 2 cut(s) 43, 215
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 25, 39, 235
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 65, 99
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SalI GTCGAC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 24, 38, 234
Sau3AI GATC 2 cut(s) 43, 215
Sau96I GGNCC 2 cut(s) 65, 99
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 128, 200, 348
SetI ASST 5 cut(s) 17, 170, 204, 245, 253
SfaNI GCATC 1 cut(s) 309
SinI GGWCC 2 cut(s) 65, 99
SsiI CCGC 9 cut(s) 24, 37, 48, 60, 85, 102, 119, 234, 259
SspMI CTAG 2 cut(s) 266, 352
StyD4I CCNGG 3 cut(s) 126, 198, 346
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 292
TauI GCSGC 3 cut(s) 26, 40, 236
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 65, 99
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 2 cut(s) 266, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.