Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

1176734 .. 1180259

Gene Structure 3526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG018000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGAACTACACCATTGCTGGTCTTGTTGCTCGGTCTTGTTGGTGTGATCCAGTACGTTGCGGGTGCAGCGGAGCACAATGGAGCTCCGTTCCCTGAGGTCGAGGGTGGACTGAGAGCTGGTTTTCCGAAGGGGTTTGTGTTCGGAACGGCGACGTCTGCTTATCAGGTGGAAGGCATGGCCAACAAGGAAGGTCGTGGACCTAGCATTTGGGATACCTTCGTTAAAATCCCAGGCATTACTCCTTATGCAAATTTGTATCACTATGATCTTCCCCTAGCACTTGAGCAAAAGTACCTGGGGTTGTTAAGTGACAAAGTAGTAAAACACAAAAAGGAAGGATTGGTATTGTCTTGGATTTTCACTGGTATGAGCCTCTTACCAGATCAAAGGCTGACAGATATGCAGCTCAAAGGGCAAGAGACTTTCATGTTGGATGTTGAGAAGAATGGAGTGCCCATTGGTCCTAGGGCATACTCTTCTTGGCTCTACCAAGTACCATGGGGTATGTACAAGTGTGTAACCTACATAAAAGAGCATTATGGGAACCCGCCTGTGATTTTATCCGAAAACGGCATGGATAACCCCGGAAACCAGACGCTTCCAAAGGCATTGCACGATACCAATAGGATCAACTTCTACAGAAGCTATTTGGAGCAACTGAAGAAGGCAGTTGATGAGGGAGCCAATGTGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTACGTGAGTTGCTCAAACAATCTCAATCAGCCCCCCCTTGCGGTGGAAGAACAGATATTGACTATTTATACCGGAACGAACGGTTATCTTGATTCATTGGAAATTGGACAGTTCCAAGAAATCATATCTTCTACCAAGACATTTACCGAGGAAGCGGAAACCCTTTTGAAAGAAGCTATTCAGGACCAGATGGAACGTTTTCTACTTCAGGAACAACACATGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

317

Amino Acids

35.67

Weight (kDa)

5.24

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	40 - 79	1.4e-12	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	152 - 240	1.4e-15	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AciI	CCGC	5 cut(s)	62, 71, 551, 767, 881
AclI	AACGTT	1 cut(s)	922
AclWI	GGATC	2 cut(s)	43, 638
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	2 cut(s)	683, 917
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	4 cut(s)	56, 296, 498, 512
AfiI	CCNNNNNNNGG	2 cut(s)	766, 769
AgsI	TTSAA	1 cut(s)	895
AjnI	CCWGG	2 cut(s)	232, 297
AluBI	AGCT	5 cut(s)	86, 119, 409, 648, 902
AluI	AGCT	5 cut(s)	86, 119, 409, 648, 902
Alw21I	GWGCWC	2 cut(s)	78, 88
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	43, 638
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	68, 406
ApoI	RAATTY	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
Asp700I	GAANNNNTTC	2 cut(s)	903, 924
AspA2I	CCTAGG	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	200, 464, 910
AsuC2I	CCSGG	1 cut(s)	588
AvaII	GGWCC	3 cut(s)	200, 464, 910
AvrII	CCTAGG	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	459
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	88
Bbv12I	GWGCWC	2 cut(s)	78, 88
BbvI	GCAGC	2 cut(s)	80, 418
BccI	CCATC	1 cut(s)	910
BceAI	ACGGC	2 cut(s)	165, 589
BciT130I	CCWGG	2 cut(s)	234, 299
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	204, 278, 468
BfmI	CTRYAG	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	69, 407
BlnI	CCTAGG	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	70, 408
Bme1390I	CCNGG	3 cut(s)	234, 299, 588
Bme18I	GGWCC	3 cut(s)	200, 464, 910
BmgT120I	GGNCC	3 cut(s)	200, 464, 910
BmiI	GGNNCC	2 cut(s)	548, 685
BmrFI	CCNGG	3 cut(s)	234, 299, 588
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	6 cut(s)	232, 298, 467, 500, 586, 873
BsaWI	WCCGGW	1 cut(s)	797
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	766, 769
Bse1I	ACTGG	2 cut(s)	52, 370
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	14, 611
BseBI	CCWGG	2 cut(s)	234, 299
BseDI	CCNNGG	6 cut(s)	232, 298, 467, 500, 586, 873
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	2 cut(s)	766, 769
BseMI	GCAATG	2 cut(s)	14, 611
BseMII	CTCAG	3 cut(s)	87, 104, 712
BseNI	ACTGG	2 cut(s)	52, 370
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	2 cut(s)	80, 418
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	2 cut(s)	78, 88
BsiSI	CCGG	2 cut(s)	588, 798
BslI	CCNNNNNNNGG	2 cut(s)	766, 769
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	78, 88, 459
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	48, 268, 385, 630
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	5 cut(s)	62, 71, 551, 767, 881
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	88, 105, 711
BspLI	GGNNCC	2 cut(s)	548, 685
BspPI	GGATC	2 cut(s)	43, 638
BsrDI	GCAATG	2 cut(s)	14, 611
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	52, 370
BssECI	CCNNGG	6 cut(s)	232, 298, 467, 500, 586, 873
BssMI	GATC	4 cut(s)	48, 268, 385, 630
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	467, 500
Bst2UI	CCWGG	2 cut(s)	234, 299
Bst4CI	ACNGT	2 cut(s)	809, 837
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	730
BstDEI	CTNAG	3 cut(s)	96, 113, 698
BstDSI	CCRYGG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	4 cut(s)	51, 271, 388, 633
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	48, 268, 385, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 158, 415
BstNI	CCWGG	2 cut(s)	234, 299
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	3 cut(s)	232, 297, 586
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	80, 418
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	200, 464, 910
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	4 cut(s)	55, 295, 497, 511
CviAII	CATG	5 cut(s)	178, 430, 501, 577, 946
CviQI	GTAC	4 cut(s)	55, 295, 497, 511
DdeI	CTNAG	3 cut(s)	96, 113, 698
DpnI	GATC	4 cut(s)	50, 270, 387, 632
DpnII	GATC	4 cut(s)	48, 268, 385, 630
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	467, 500
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	200, 464, 910
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	683, 917
Eco81I	CCTNAGG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	232, 297
EcoT14I	CCWWGG	2 cut(s)	467, 500
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	467, 500
FaeI	CATG	5 cut(s)	181, 433, 504, 580, 949
FatI	CATG	5 cut(s)	177, 429, 500, 576, 945
FauI	CCCGC	2 cut(s)	55, 558
Fnu4HI	GCNGC	2 cut(s)	69, 407
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	69, 407
FspBI	CTAG	3 cut(s)	204, 278, 468
GluI	GCNGC	2 cut(s)	69, 407
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	588, 798
HgaI	GACGC	1 cut(s)	607
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	5 cut(s)	181, 433, 504, 580, 949
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	2 cut(s)	702, 818
HpaII	CCGG	2 cut(s)	588, 798
Hpy166II	GTNNAC	3 cut(s)	110, 200, 721
Hpy188I	TCNGA	4 cut(s)	129, 146, 568, 701
Hpy188III	TCNNGA	3 cut(s)	815, 908, 935
Hpy8I	GTNNAC	3 cut(s)	110, 200, 721
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	6 cut(s)	124, 167, 185, 229, 332, 661
HpyCH4III	ACNGT	2 cut(s)	809, 837
HpyCH4IV	ACGT	4 cut(s)	57, 155, 729, 922
HpyCH4V	TGCA	5 cut(s)	68, 251, 406, 616, 949
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 158, 415
HpyF3I	CTNAG	3 cut(s)	96, 113, 698
HpySE526I	ACGT	4 cut(s)	57, 155, 729, 922
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	5 cut(s)	181, 433, 504, 580, 949
Kzo9I	GATC	4 cut(s)	48, 268, 385, 630
LmnI	GCTCC	5 cut(s)	73, 83, 91, 655, 683
Lsp1109I	GCAGC	2 cut(s)	80, 418
MaeI	CTAG	3 cut(s)	204, 278, 468
MaeII	ACGT	4 cut(s)	57, 155, 729, 922
MaeIII	GTNAC	2 cut(s)	311, 520
MalI	GATC	4 cut(s)	50, 270, 387, 632
MboI	GATC	4 cut(s)	48, 268, 385, 630
MboII	GAAGA	6 cut(s)	263, 457, 471, 676, 785, 846
MfeI	CAATTG	1 cut(s)	706
MhlI	GDGCHC	3 cut(s)	78, 88, 459
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	3 cut(s)	253, 706, 828
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	91, 97, 386, 673, 709, 868
Mox20I	TGGCCA	1 cut(s)	182
MroXI	GAANNNNTTC	2 cut(s)	903, 924
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	225, 308
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	588, 798
MspR9I	CCNGG	3 cut(s)	234, 299, 588
MunI	CAATTG	1 cut(s)	706
MvaI	CCWGG	2 cut(s)	234, 299
MwoI	GCNNNNNNNGC	3 cut(s)	68, 158, 415
NciI	CCSGG	1 cut(s)	588
NcoI	CCATGG	1 cut(s)	500
NdeII	GATC	4 cut(s)	48, 268, 385, 630
NlaIII	CATG	5 cut(s)	181, 433, 504, 580, 949
NlaIV	GGNNCC	2 cut(s)	548, 685
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	949
PdmI	GAANNNNTTC	2 cut(s)	903, 924
PfeI	GAWTC	2 cut(s)	702, 818
PkrI	GCNGC	2 cut(s)	70, 408
Ppu21I	YACGTR	1 cut(s)	730
Psp124BI	GAGCTC	1 cut(s)	88
Psp1406I	AACGTT	1 cut(s)	922
Psp6I	CCWGG	2 cut(s)	232, 297
PspGI	CCWGG	2 cut(s)	232, 297
PspN4I	GGNNCC	2 cut(s)	548, 685
PspPI	GGNCC	3 cut(s)	200, 464, 910
PsrI	GAACNNNNNNTAC	2 cut(s)	912, 944
RsaI	GTAC	4 cut(s)	56, 296, 498, 512
RsaNI	GTAC	4 cut(s)	55, 295, 497, 511
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	225, 308
SatI	GCNGC	2 cut(s)	69, 407
Sau3AI	GATC	4 cut(s)	48, 268, 385, 630
Sau96I	GGNCC	3 cut(s)	200, 464, 910
ScrFI	CCNGG	3 cut(s)	234, 299, 588
SduI	GDGCHC	3 cut(s)	78, 88, 459
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	3 cut(s)	200, 464, 910
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	253, 706, 828
SsiI	CCGC	5 cut(s)	62, 71, 551, 767, 881
SspMI	CTAG	3 cut(s)	204, 278, 468
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	3 cut(s)	232, 297, 586
StyI	CCWWGG	2 cut(s)	467, 500
TaaI	ACNGT	2 cut(s)	809, 837
TaiI	ACGT	4 cut(s)	60, 158, 732, 925
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	253, 706, 828
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	702, 818
Tru1I	TTAA	2 cut(s)	225, 308
Tru9I	TTAA	2 cut(s)	225, 308
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	68, 406
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	418, 810
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	3 cut(s)	200, 464, 910
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	949
XmaJI	CCTAGG	1 cut(s)	467
XmnI	GAANNNNTTC	2 cut(s)	903, 924
XspI	CTAG	3 cut(s)	204, 278, 468
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.