Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

1171348 .. 1174444

Gene Structure 3097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGAACTACACCAGTGCTGGTGCTCTTCTTGCTCAGTCTTGTTGTTGTGATCCAGTACGTTGCGGGTGCAGCGGAGCACAATGGAGCTCCGTTCCCTGAGGCCGAGGGTGGACTGAGAGCTAGTTTTCCGAAGGGGTTTGTGTTCGGAACGGCGACGTCTGCTTATCAGGTGGAAGGCATGGCCAACAAGGAAGGTCGTGGACCTAGCATTTGGGATACCTTCGTTAAAATCCCAGAGGGTACTGGGAAAGTGAATTGGAAAGGAGTGGCATACTACGATCGAAAACACAAAAAGGAAAGATTGGTATACTCTTGGATTTTGTTTGGTATGAGCCTCTTACCAGATCAAAGGCTGACAGATATGCAGCTCAAAGGGCAAGAGACTTTCACGTTGGATGATGAGAAGAATGGAGTGCCTATTGGTCCTAGGGCATACTCTTCTTGGCTCTACCAAGTACCATGGGGTTTGTACAAGTCTATAACGTACATAAAAGAGCATTATGGGAACCCACCTGTGATTTTGTCCGAAAACGGCATGGATAACCCCGGAAACCAGACTCTTCCAAAGGCATTGCACGATACCAATAGGATCAACTACTACAGAAGCTATCTGGAGCAACTGAAGAAGGCAGTTGCTGAGGGAGCCAATGTGTATTATATACCTTTAAATGAGAGACGCATATTTAAAGTCAAAACAAATCAAGGAGCTGGCGATTTTAGGCAGATCAGCGCACAATTGTTGCGGATTACCTTTAAAATCAAACCTCACATTGGTCATGTTTATATCAAAAGTGTTGAAAAAGAGCATTCAAAATATTCAAAAGCACTTTGGTATCGTCTGGTGTTTGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

285

Amino Acids

32.47

Weight (kDa)

9.51

Isoelectric Point (pI)

22.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	41 - 91	8.1e-14	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	139 - 218	7.4e-16	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	3 cut(s)	65, 74, 745
AclWI	GGATC	2 cut(s)	46, 599
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	5 cut(s)	59, 244, 459, 473, 488
AfiI	CCNNNNNNNGG	1 cut(s)	773
AgsI	TTSAA	3 cut(s)	800, 813, 822
AluBI	AGCT	5 cut(s)	89, 122, 370, 609, 710
AluI	AGCT	5 cut(s)	89, 122, 370, 609, 710
Alw21I	GWGCWC	3 cut(s)	27, 81, 91
Alw26I	GTCTC	2 cut(s)	377, 670
AlwI	GGATC	2 cut(s)	46, 599
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	2 cut(s)	102, 183
ApeKI	GCWGC	2 cut(s)	71, 367
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspA2I	CCTAGG	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	2 cut(s)	203, 425
AsuC2I	CCSGG	1 cut(s)	549
AvaII	GGWCC	2 cut(s)	203, 425
AvrII	CCTAGG	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	99
BaeI	ACNNNNGTAYC	4 cut(s)	210, 243, 818, 851
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	3 cut(s)	27, 81, 91
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	83, 379
BceAI	ACGGC	2 cut(s)	168, 550
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	377, 670
BfaI	CTAG	3 cut(s)	123, 207, 429
BfmI	CTRYAG	1 cut(s)	601
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	72, 368
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	2 cut(s)	73, 369
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	2 cut(s)	203, 425
BmgT120I	GGNCC	2 cut(s)	203, 425
BmiI	GGNNCC	2 cut(s)	509, 646
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	639
BpuMI	CCSGG	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	105, 428, 461, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse1I	ACTGG	3 cut(s)	14, 55, 250
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	572
BseDI	CCNNGG	4 cut(s)	105, 428, 461, 547
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	4 cut(s)	49, 90, 107, 630
BseNI	ACTGG	3 cut(s)	14, 55, 250
BseXI	GCAGC	2 cut(s)	83, 379
BsgI	GTGCAG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	2 cut(s)	104, 185
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	27, 81, 91
BsiSI	CCGG	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	2 cut(s)	377, 670
BsmBI	CGTCTC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	2 cut(s)	104, 185
Bsp1286I	GDGCHC	3 cut(s)	27, 81, 91
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	5 cut(s)	51, 280, 346, 591, 726
Bsp19I	CCATGG	1 cut(s)	461
BspACI	CCGC	3 cut(s)	65, 74, 745
BspANI	GGCC	2 cut(s)	104, 185
BspCNI	CTCAG	4 cut(s)	48, 91, 108, 631
BspLI	GGNNCC	2 cut(s)	509, 646
BspPI	GGATC	2 cut(s)	46, 599
BspQI	GCTCTTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	572
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	14, 55, 250
BssECI	CCNNGG	4 cut(s)	105, 428, 461, 547
BssMI	GATC	5 cut(s)	51, 280, 346, 591, 726
BssNAI	GTATAC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	428, 461
Bst1107I	GTATAC	1 cut(s)	310
Bst6I	CTCTTC	3 cut(s)	32, 445, 567
BstACI	GRCGYC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	4 cut(s)	35, 99, 116, 639
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	5 cut(s)	54, 283, 349, 594, 729
BstMAI	GTCTC	2 cut(s)	377, 670
BstMBI	GATC	5 cut(s)	51, 280, 346, 591, 726
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 71, 161, 376, 644
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	601
BstV1I	GCAGC	2 cut(s)	83, 379
BstZ17I	GTATAC	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	104, 185
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	712
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	2 cut(s)	203, 425
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	5 cut(s)	58, 243, 458, 472, 487
CviAII	CATG	4 cut(s)	181, 462, 538, 779
CviQI	GTAC	5 cut(s)	58, 243, 458, 472, 487
DdeI	CTNAG	4 cut(s)	35, 99, 116, 639
DpnI	GATC	5 cut(s)	53, 282, 348, 593, 728
DpnII	GATC	5 cut(s)	51, 280, 346, 591, 726
DraI	TTTAAA	3 cut(s)	669, 688, 757
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	32, 445, 567
EarI	CTCTTC	3 cut(s)	32, 445, 567
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	428, 461
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	203, 425
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	89
EcoT14I	CCWWGG	2 cut(s)	428, 461
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	428, 461
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	4 cut(s)	184, 465, 541, 782
FatI	CATG	4 cut(s)	180, 461, 537, 778
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	72, 368
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	72, 368
FspBI	CTAG	3 cut(s)	123, 207, 429
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	2 cut(s)	72, 368
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	104, 185
HapII	CCGG	1 cut(s)	549
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	184, 465, 541, 782
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	549
Hpy166II	GTNNAC	3 cut(s)	113, 203, 310
Hpy188I	TCNGA	3 cut(s)	132, 149, 529
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	3 cut(s)	113, 203, 310
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	127, 170, 188, 232, 622
HpyCH4IV	ACGT	4 cut(s)	60, 158, 392, 485
HpyCH4V	TGCA	3 cut(s)	71, 367, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 71, 161, 376, 644
HpyF3I	CTNAG	4 cut(s)	35, 99, 116, 639
HpySE526I	ACGT	4 cut(s)	60, 158, 392, 485
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	184, 465, 541, 782
HspAI	GCGC	1 cut(s)	732
Kzo9I	GATC	5 cut(s)	51, 280, 346, 591, 726
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	6 cut(s)	76, 86, 94, 616, 644, 707
Lsp1109I	GCAGC	2 cut(s)	83, 379
MaeI	CTAG	3 cut(s)	123, 207, 429
MaeII	ACGT	4 cut(s)	60, 158, 392, 485
MalI	GATC	5 cut(s)	53, 282, 348, 593, 728
MboI	GATC	5 cut(s)	51, 280, 346, 591, 726
MboII	GAAGA	5 cut(s)	19, 418, 432, 554, 637
MfeI	CAATTG	1 cut(s)	737
MhlI	GDGCHC	3 cut(s)	27, 81, 91
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	256, 737
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	6 cut(s)	94, 100, 232, 347, 634, 777
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	4 cut(s)	228, 668, 687, 756
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	808
MwoI	GCNNNNNNNGC	5 cut(s)	31, 71, 161, 376, 644
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	1 cut(s)	461
NdeII	GATC	5 cut(s)	51, 280, 346, 591, 726
NlaIII	CATG	4 cut(s)	184, 465, 541, 782
NlaIV	GGNNCC	2 cut(s)	509, 646
NmeAIII	GCCGAG	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	808
PkrI	GCNGC	2 cut(s)	73, 369
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
Psp124BI	GAGCTC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	509, 646
PspPI	GGNCC	2 cut(s)	203, 425
PstNI	CAGNNNCTG	1 cut(s)	638
PvuI	CGATCG	1 cut(s)	283
RsaI	GTAC	5 cut(s)	59, 244, 459, 473, 488
RsaNI	GTAC	5 cut(s)	58, 243, 458, 472, 487
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	228, 668, 687, 756
SatI	GCNGC	2 cut(s)	72, 368
Sau3AI	GATC	5 cut(s)	51, 280, 346, 591, 726
Sau96I	GGNCC	2 cut(s)	203, 425
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	3 cut(s)	27, 81, 91
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	2 cut(s)	203, 425
Sse9I	AATT	2 cut(s)	256, 737
SsiI	CCGC	3 cut(s)	65, 74, 745
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	3 cut(s)	123, 207, 429
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	428, 461
TaiI	ACGT	4 cut(s)	63, 161, 395, 488
TaqI	TCGA	1 cut(s)	283
TasI	AATT	2 cut(s)	256, 737
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	4 cut(s)	228, 668, 687, 756
Tru9I	TTAA	4 cut(s)	228, 668, 687, 756
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	71, 367
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	203, 425
XmaJI	CCTAGG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	3 cut(s)	123, 207, 429
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.