Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

1383766 .. 1386303

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG018600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGAACTACACCAGTGCTGGTGCTCTTCTTGCTCAGTCTTGTTGTTGTGATCCAGTACGTTGCGGGTGCAGCAGAGCACAATGGAGCTCCGTTCCCTGAGGCCGAGGGTGGACTGAGAGCTAGTTTTCCGAAGGGGTTTGTGTTCGGAACGGCGACGTCAGCTTATCAGGTGGAAGGCATGGCCAACAAGGAAGGTCGTGGACCTAGCATTTGGGATACCTTCGTTAAAATCCCAGGGATTGTTGCAAATAATGCTACTGGAGATGTTACGGTTGACCAATATCACCGTTACAAAGGTACTGGGAAAGTGAATTGGAAAGGAGTGGCATACTACGATCGAAAACACAAAAAGGAAAGATTGGTATACTCTTGGATTTTATTTGGTTTGAGCCTCTTACCAGATCAAAGGCTGACAGATATGCAGCTCAAAGGGCAAGAGACTTTCAAGTTGGATGATGAGAAGAATGGAGTGCCTATTGGTCCTAGGGCATATTCTTCTTGGCTCTACCAAGTACCATGGGGTTTGTACAAGTGTATAACGTACATAAAAGAACATTATGGGAATCCACCTGTGATTTTGTCCGAAAACGGCATGGATAACCCCGGAAACCAGACTCTTCCAAAGGCATTGCACGATACCAATAGGATCAACTACTACAGAAGCTATCTGGAGCAACTGAAGAAGGCAGTTGATGAGGGAGCCAATGTGGTAGGCTACTTTGCTTGGTCATTGCTCGACAACTTTGAATGGAGATTGGGTTACACTTCAAGGTTTGGCATAGTCTATGTTGACTTCACCACCCTCAAGAGATACCCAAAGATGTCTGCCTTCTGGTTCAAGAAACTTCTTACCAAAAAGAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

289

Amino Acids

32.93

Weight (kDa)

9.44

Isoelectric Point (pI)

15.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	41 - 99	7.4e-20	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	158 - 288	4.5e-41	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	46, 656
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	5 cut(s)	59, 301, 516, 530, 545
AgsI	TTSAA	4 cut(s)	448, 749, 771, 841
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	5 cut(s)	89, 122, 164, 427, 666
AluI	AGCT	5 cut(s)	89, 122, 164, 427, 666
Alw21I	GWGCWC	3 cut(s)	27, 81, 91
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	2 cut(s)	46, 656
AoxI	GGCC	2 cut(s)	102, 183
ApeKI	GCWGC	2 cut(s)	71, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspA2I	CCTAGG	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	203, 482
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	278, 790
AvaII	GGWCC	2 cut(s)	203, 482
AvrII	CCTAGG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	99
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	3 cut(s)	27, 81, 91
BbvI	GCAGC	2 cut(s)	83, 436
BceAI	ACGGC	2 cut(s)	168, 607
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	3 cut(s)	123, 207, 486
BfmI	CTRYAG	1 cut(s)	658
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	72, 425
BlnI	CCTAGG	1 cut(s)	485
BlsI	GCNGC	2 cut(s)	73, 426
Bme1390I	CCNGG	2 cut(s)	237, 606
Bme18I	GGWCC	2 cut(s)	203, 482
BmgT120I	GGNCC	2 cut(s)	203, 482
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	2 cut(s)	237, 606
BmrI	ACTGGG	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	312
BpmI	CTGGAG	2 cut(s)	282, 692
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	6 cut(s)	105, 235, 236, 485, 518, 604
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 745, 775
Bse1I	ACTGG	4 cut(s)	14, 55, 265, 307
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	2 cut(s)	629, 731
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	6 cut(s)	105, 235, 236, 485, 518, 604
BseGI	GGATG	1 cut(s)	460
BseMI	GCAATG	2 cut(s)	629, 731
BseMII	CTCAG	3 cut(s)	49, 90, 107
BseNI	ACTGG	4 cut(s)	14, 55, 265, 307
BseXI	GCAGC	2 cut(s)	83, 436
BsgI	GTGCAG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	104, 185
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	3 cut(s)	27, 81, 91
BsiSI	CCGG	1 cut(s)	606
BsmAI	GTCTC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	104, 185
Bsp1286I	GDGCHC	3 cut(s)	27, 81, 91
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	51, 337, 403, 648
Bsp19I	CCATGG	1 cut(s)	518
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	2 cut(s)	104, 185
BspCNI	CTCAG	3 cut(s)	48, 91, 108
BspLI	GGNNCC	1 cut(s)	703
BspPI	GGATC	2 cut(s)	46, 656
BspQI	GCTCTTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	629, 731
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	4 cut(s)	14, 55, 265, 307
BssECI	CCNNGG	6 cut(s)	105, 235, 236, 485, 518, 604
BssMI	GATC	4 cut(s)	51, 337, 403, 648
BssNAI	GTATAC	1 cut(s)	367
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	485, 518
Bst1107I	GTATAC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	274, 290
Bst6I	CTCTTC	2 cut(s)	32, 624
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	35, 99, 116
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	54, 340, 406, 651
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	51, 337, 403, 648
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 71, 161, 254, 433
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	235, 604
BstSFI	CTRYAG	1 cut(s)	658
BstV1I	GCAGC	2 cut(s)	83, 436
BstZ17I	GTATAC	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	104, 185
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	203, 482
Csp6I	GTAC	5 cut(s)	58, 300, 515, 529, 544
CviAII	CATG	3 cut(s)	181, 519, 595
CviQI	GTAC	5 cut(s)	58, 300, 515, 529, 544
DdeI	CTNAG	3 cut(s)	35, 99, 116
DpnI	GATC	4 cut(s)	53, 339, 405, 650
DpnII	GATC	4 cut(s)	51, 337, 403, 648
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	32, 624
EarI	CTCTTC	2 cut(s)	32, 624
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	485, 518
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	203, 482
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	701
Eco81I	CCTNAGG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	485, 518
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	485, 518
FaeI	CATG	3 cut(s)	184, 522, 598
FatI	CATG	3 cut(s)	180, 518, 594
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	72, 425
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	72, 425
FspBI	CTAG	3 cut(s)	123, 207, 486
GluI	GCNGC	2 cut(s)	72, 425
GsuI	CTGGAG	2 cut(s)	282, 692
HaeIII	GGCC	2 cut(s)	104, 185
HapII	CCGG	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	184, 522, 598
HincII	GTYRAC	2 cut(s)	277, 793
HindII	GTYRAC	2 cut(s)	277, 793
HinfI	GANTC	2 cut(s)	565, 616
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	278, 790
Hpy166II	GTNNAC	5 cut(s)	113, 203, 277, 367, 793
Hpy188I	TCNGA	3 cut(s)	132, 149, 586
Hpy188III	TCNNGA	3 cut(s)	671, 808, 841
Hpy8I	GTNNAC	5 cut(s)	113, 203, 277, 367, 793
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	6 cut(s)	127, 170, 188, 232, 679, 841
HpyCH4III	ACNGT	2 cut(s)	274, 290
HpyCH4IV	ACGT	3 cut(s)	60, 158, 542
HpyCH4V	TGCA	4 cut(s)	71, 248, 424, 634
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 71, 161, 254, 433
HpyF3I	CTNAG	3 cut(s)	35, 99, 116
HpySE526I	ACGT	3 cut(s)	60, 158, 542
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	184, 522, 598
Kzo9I	GATC	4 cut(s)	51, 337, 403, 648
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	86, 94, 673, 701
Lsp1109I	GCAGC	2 cut(s)	83, 436
MaeI	CTAG	3 cut(s)	123, 207, 486
MaeII	ACGT	3 cut(s)	60, 158, 542
MaeIII	GTNAC	3 cut(s)	268, 290, 761
MalI	GATC	4 cut(s)	53, 339, 405, 650
MboI	GATC	4 cut(s)	51, 337, 403, 648
MboII	GAAGA	5 cut(s)	19, 475, 489, 611, 694
MhlI	GDGCHC	3 cut(s)	27, 81, 91
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	94, 100, 404, 691, 815
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	237, 606
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	31, 71, 161, 254, 433
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	51, 337, 403, 648
NlaIII	CATG	3 cut(s)	184, 522, 598
NlaIV	GGNNCC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	73, 426
Ple19I	CGATCG	1 cut(s)	340
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	2 cut(s)	203, 482
PvuI	CGATCG	1 cut(s)	340
RsaI	GTAC	5 cut(s)	59, 301, 516, 530, 545
RsaNI	GTAC	5 cut(s)	58, 300, 515, 529, 544
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	72, 425
Sau3AI	GATC	4 cut(s)	51, 337, 403, 648
Sau96I	GGNCC	2 cut(s)	203, 482
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	237, 606
SduI	GDGCHC	3 cut(s)	27, 81, 91
SfcI	CTRYAG	1 cut(s)	658
SinI	GGWCC	2 cut(s)	203, 482
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	3 cut(s)	123, 207, 486
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	235, 604
StyI	CCWWGG	2 cut(s)	485, 518
TaaI	ACNGT	2 cut(s)	274, 290
TaiI	ACGT	3 cut(s)	63, 161, 545
TaqI	TCGA	2 cut(s)	340, 738
TasI	AATT	1 cut(s)	313
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	71, 424
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	203, 482
XmaJI	CCTAGG	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	3 cut(s)	123, 207, 486
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.