Rh2AG182000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001264
Physical Location & Seq
Reverse (-)
17544920 .. 17552888
7969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG182000.1

Sequence Viewer

Length: 696 bp
ATGGAGTCAAGAAGGTCAAAAGCCGCCAGCCAATATCGGCCTGATCCCGCTACGGCCACCGCTGGACCACCCACAGCGCCGCTCCGCCACCGACTCCGGACCGCCGACGTCATCCTTCCGCCCTCCCAGGCACGCCATGGAGAGACACCACCCCATTCCACCGTCCCCTTCCCCAGATCGTACACCGGCAGCACAACCCAGATCGGGCTAATCCAATCCGAGTCAAGCCCCGCCGCCACGACCTCATCACCTCCAGTCCACCTCCTAGCCCGTGCGACCCCACCAAGCCGCCAACCTTGCATCCATGGCAGTCCAGCCGCCGTTGCAGCCCGCTCCGCTCCCAAACCCGGCCAGCGAGAACAAGACCCCGTACCAGCAGCCTTGATCTTCCCCTCCATCTCCTCTGCACACCAGCGATCAGATCGAAGGTGCAAACCACAGACCAACATCCCAAAGGGCCAACAATTCCCGTCCGACGACAGCGTCACCGGACGCGCCGCCGGACGGAGAGAGAGAAAAGTCCTGAAAAGTCGCTTTTGCCCTTGCTTTTGGATTCATATCAAGTTCTGCAATTTGCCCTTTCTAGAAGCATCCTTCTACACCGACATCAACTCTTCCAGACTAAAAATTGAAATTTCTGGAAGCATCCTTCTACACCGACATCTCTACACCGACATCAACTCTTCCAGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.27

Weight (kDa)

10.55

Isoelectric Point (pI)

78.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AatII GACGTC 1 cut(s) 111
AccBSI CCGCTC 3 cut(s) 82, 333, 338
AccII CGCG 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 96
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 2 cut(s) 54, 349
AcsI RAATTY 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 182, 372
AfiI CCNNNNNNNGG 3 cut(s) 204, 347, 504
AgsI TTSAA 1 cut(s) 632
AjnI CCWGG 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 4 cut(s) 38, 54, 349, 457
ApeKI GCWGC 3 cut(s) 189, 326, 377
ApoI RAATTY 1 cut(s) 633
AspLEI GCGC 2 cut(s) 79, 497
AspS9I GGNCC 3 cut(s) 65, 99, 457
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 240, 478
AvaII GGWCC 2 cut(s) 65, 99
BbvI GCAGC 3 cut(s) 201, 338, 389
BccI CCATC 1 cut(s) 404
BceAI ACGGC 2 cut(s) 69, 305
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 266, 584
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 9 cut(s) 24, 80, 190, 234, 289, 318, 327, 378, 498
BlsI GCNGC 9 cut(s) 25, 81, 191, 235, 290, 319, 328, 379, 499
Bme1390I CCNGG 2 cut(s) 128, 348
Bme18I GGWCC 2 cut(s) 65, 99
BmgT120I GGNCC 3 cut(s) 65, 99, 457
BmrFI CCNGG 2 cut(s) 128, 348
BmsI GCATC 3 cut(s) 309, 599, 654
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 126, 136, 304
BsaWI WCCGGW 2 cut(s) 96, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 347, 504
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 557
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 126, 136, 304
BseGI GGATG 5 cut(s) 111, 300, 447, 590, 645
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 3 cut(s) 204, 347, 504
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 391
BseXI GCAGC 3 cut(s) 201, 338, 389
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 4 cut(s) 40, 56, 351, 459
BsiSI CCGG 5 cut(s) 97, 186, 348, 489, 501
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 204, 347, 504
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 4 cut(s) 40, 56, 351, 459
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 6 cut(s) 43, 176, 201, 384, 416, 421
Bsp19I CCATGG 2 cut(s) 136, 304
BspANI GGCC 4 cut(s) 40, 56, 351, 459
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 1 cut(s) 495
BspPI GGATC 1 cut(s) 38
BsrBI CCGCTC 3 cut(s) 82, 333, 338
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 126, 136, 304
BssMI GATC 6 cut(s) 43, 176, 201, 384, 416, 421
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 136, 304
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 619, 688
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 4 cut(s) 28, 133, 331, 353
BstDSI CCRYGG 2 cut(s) 136, 304
BstF5I GGATG 5 cut(s) 111, 300, 447, 590, 645
BstFNI CGCG 1 cut(s) 495
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 497
BstKTI GATC 6 cut(s) 46, 179, 204, 387, 419, 424
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 6 cut(s) 43, 176, 201, 384, 416, 421
BstMWI GCNNNNNNNGC 5 cut(s) 297, 306, 323, 326, 335
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 346
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 201, 338, 389
BsuRI GGCC 4 cut(s) 40, 56, 351, 459
BtgI CCRYGG 2 cut(s) 136, 304
BtsCI GGATG 5 cut(s) 111, 300, 447, 590, 645
Cac8I GCNNGC 4 cut(s) 28, 133, 331, 353
CfoI GCGC 2 cut(s) 79, 497
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 3 cut(s) 65, 99, 457
CpoI CGGWCCG 1 cut(s) 99
CseI GACGC 2 cut(s) 472, 501
Csp6I GTAC 2 cut(s) 181, 371
CspI CGGWCCG 1 cut(s) 99
CviAII CATG 2 cut(s) 137, 305
CviQI GTAC 2 cut(s) 181, 371
DpnI GATC 6 cut(s) 45, 178, 203, 386, 418, 423
DpnII GATC 6 cut(s) 43, 176, 201, 384, 416, 421
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
EaeI YGGCCR 2 cut(s) 54, 349
Eam1104I CTCTTC 2 cut(s) 619, 688
EarI CTCTTC 2 cut(s) 619, 688
EciI GGCGGA 2 cut(s) 74, 108
Eco130I CCWWGG 2 cut(s) 136, 304
Eco47I GGWCC 2 cut(s) 65, 99
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 136, 304
ErhI CCWWGG 2 cut(s) 136, 304
FaeI CATG 2 cut(s) 140, 308
FaiI YATR 4 cut(s) 138, 306, 558, 694
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 136, 304
FauI CCCGC 3 cut(s) 55, 238, 338
Fnu4HI GCNGC 9 cut(s) 24, 80, 190, 234, 289, 318, 327, 378, 498
FokI GGATG 5 cut(s) 98, 287, 434, 577, 632
Fsp4HI GCNGC 9 cut(s) 24, 80, 190, 234, 289, 318, 327, 378, 498
FspBI CTAG 2 cut(s) 266, 584
GlaI GCGC 2 cut(s) 78, 496
GluI GCNGC 9 cut(s) 24, 80, 190, 234, 289, 318, 327, 378, 498
GsuI CTGGAG 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 4 cut(s) 40, 56, 351, 459
HapII CCGG 5 cut(s) 97, 186, 348, 489, 501
HgaI GACGC 2 cut(s) 472, 501
HhaI GCGC 2 cut(s) 79, 497
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 140, 308
Hin6I GCGC 2 cut(s) 77, 495
HinP1I GCGC 2 cut(s) 77, 495
HinfI GANTC 4 cut(s) 5, 93, 221, 553
HpaII CCGG 5 cut(s) 97, 186, 348, 489, 501
HphI GGTGA 2 cut(s) 240, 478
Hpy166II GTNNAC 2 cut(s) 183, 259
Hpy188I TCNGA 3 cut(s) 220, 421, 475
Hpy188III TCNNGA 7 cut(s) 9, 97, 523, 584, 618, 639, 687
Hpy8I GTNNAC 2 cut(s) 183, 259
Hpy99I CGWCG 2 cut(s) 110, 479
HpyAV CCTTC 6 cut(s) 6, 125, 178, 420, 604, 659
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 300, 326, 407, 432, 570
HpyF10VI GCNNNNNNNGC 5 cut(s) 297, 306, 323, 326, 335
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 140, 308
HspAI GCGC 2 cut(s) 77, 495
Kpn2I TCCGGA 1 cut(s) 96
Kzo9I GATC 6 cut(s) 43, 176, 201, 384, 416, 421
LmnI GCTCC 3 cut(s) 87, 338, 343
Lsp1109I GCAGC 3 cut(s) 201, 338, 389
LweI GCATC 3 cut(s) 309, 599, 654
MaeI CTAG 2 cut(s) 266, 584
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 484
MalI GATC 6 cut(s) 45, 178, 203, 386, 418, 423
MbiI CCGCTC 3 cut(s) 82, 333, 338
MboI GATC 6 cut(s) 43, 176, 201, 384, 416, 421
MboII GAAGA 3 cut(s) 379, 606, 675
MluCI AATT 4 cut(s) 464, 571, 627, 633
MlyI GAGTC 3 cut(s) 14, 87, 230
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 6 cut(s) 133, 253, 261, 272, 403, 412
MroI TCCGGA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 5 cut(s) 97, 186, 348, 489, 501
MspR9I CCNGG 2 cut(s) 128, 348
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 5 cut(s) 297, 306, 323, 326, 335
NciI CCSGG 1 cut(s) 348
NcoI CCATGG 2 cut(s) 136, 304
NdeII GATC 6 cut(s) 43, 176, 201, 384, 416, 421
NlaIII CATG 2 cut(s) 140, 308
NmuCI GTSAC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 553
PflFI GACNNNGTC 1 cut(s) 482
PkrI GCNGC 9 cut(s) 25, 81, 191, 235, 290, 319, 328, 379, 499
PleI GAGTC 3 cut(s) 13, 87, 229
PpsI GAGTC 3 cut(s) 13, 87, 229
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 3 cut(s) 65, 99, 457
PsyI GACNNNGTC 1 cut(s) 482
RsaI GTAC 2 cut(s) 182, 372
RsaNI GTAC 2 cut(s) 181, 371
Rsr2I CGGWCCG 1 cut(s) 99
RsrII CGGWCCG 1 cut(s) 99
SatI GCNGC 9 cut(s) 24, 80, 190, 234, 289, 318, 327, 378, 498
Sau3AI GATC 6 cut(s) 43, 176, 201, 384, 416, 421
Sau96I GGNCC 3 cut(s) 65, 99, 457
SchI GAGTC 3 cut(s) 14, 87, 230
ScrFI CCNGG 2 cut(s) 128, 348
SetI ASST 7 cut(s) 17, 111, 245, 253, 264, 298, 431
SfaNI GCATC 3 cut(s) 309, 599, 654
SinI GGWCC 2 cut(s) 65, 99
Sse9I AATT 4 cut(s) 464, 571, 627, 633
SspMI CTAG 2 cut(s) 266, 584
StyD4I CCNGG 2 cut(s) 126, 346
StyI CCWWGG 2 cut(s) 136, 304
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 424
TasI AATT 4 cut(s) 464, 571, 627, 633
TauI GCSGC 6 cut(s) 26, 82, 236, 291, 320, 500
TfiI GAWTC 1 cut(s) 553
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 189, 326, 377
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 1 cut(s) 545
TspGWI ACGGA 1 cut(s) 520
Tth111I GACNNNGTC 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 65, 99
XapI RAATTY 1 cut(s) 633
XbaI TCTAGA 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XspI CTAG 2 cut(s) 266, 584
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.