Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025325.1

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Reverse (-)

47118 .. 49076

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025325.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgaaaaacctaaattttgatgcctatcggttctcaatatcatggtccagaatcttcccagatggtactgggaaagtgaattggaaaggggttgcatactacaaccggttaattaactacctactaaaaagaggcattactccttatgcaaatttgtatcactatgatcttcccctagcacttgagcaaaagtacctggggttgttaagtgacaaagtagtgaaggattttgcggattacgcagaattttgcttcaaaacatttggagacagagtgaagaactggatgacattcaatgagcctagagtggcggctgctcttggctatgacaatggattctttgctccgggacggtgctccaaagcttatggaaattgcacagctgggaattcaggaactgagccttacattgctgctcatcatttgattttgtcacatgcagctgctgttcagagataccgcgaaaagtatcagaaaacacaaaaaggaaggattggtattgtcttggattttcactggtatgagcctcttaccagatcaaaggctgacagatatgcagctcaaagggcaagagactttcatgttggatggttcattcatccgattgtatatggggagtatccgaaaacaatccaaaacattgttggcaataggctacctaagtttacaaaggaggaggttaagatggtgaagggctcaatggactttgtaggcatcaaccagtacaccgcttactacatgtatgatccacatcaaaataaaacaaaaccaaatgccttgggataccagaatgactggaatgccggatttgcttatgagaagaatggagtgcctattggtcctagggcgtactcttcttggctctaccaagtaccatggggtatgtacaagtgtgtaacctacataaaagagcattatgggaacccgcctgtgattttatctgaaaacggcatggataaccccggaaaccagacgcttccaaaggcattgctcgataccaataggatcaacttctacagaagctatttggagcaactgaagaaggcagttgatgagggagccaatgtggtaggctactttgcttggtcattgctcgacaactttgaatggagatcgggtttcacttcaaggtttggcatagtctatgttgacttcaccaccctcaagagatacccaaagacgtcagcctactggttccagaaacttcttaccaaaaagaagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

408

Amino Acids

47.37

Weight (kDa)

9.49

Isoelectric Point (pI)

20.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1184
AccII	CGCG	1 cut(s)	462
AciI	CCGC	5 cut(s)	233, 311, 460, 729, 926
AclWI	GGATC	2 cut(s)	740, 1013
AcsI	RAATTY	4 cut(s)	13, 151, 245, 388
AcuI	CTGAAG	1 cut(s)	1058
AcyI	GRCGYC	1 cut(s)	1181
AfaI	GTAC	6 cut(s)	67, 194, 725, 851, 873, 887
AflIII	ACRYGT	1 cut(s)	738
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	256, 295, 1106, 1128
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	5 cut(s)	365, 383, 443, 560, 1023
AluI	AGCT	5 cut(s)	365, 383, 443, 560, 1023
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	261, 567
AlwI	GGATC	2 cut(s)	740, 1013
AlwNI	CAGNNNCTG	2 cut(s)	398, 446
ApeKI	GCWGC	5 cut(s)	314, 413, 440, 443, 557
ApoI	RAATTY	4 cut(s)	13, 151, 245, 388
AsiGI	ACCGGT	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	842
AspS9I	GGNCC	2 cut(s)	45, 839
AsuC2I	CCSGG	2 cut(s)	348, 963
AsuHPI	GGTGA	2 cut(s)	700, 1147
AvaII	GGWCC	2 cut(s)	45, 839
AvrII	CCTAGG	1 cut(s)	842
BanII	GRGCYC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	5 cut(s)	301, 400, 430, 452, 569
BccI	CCATC	3 cut(s)	56, 582, 679
BceAI	ACGGC	1 cut(s)	964
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	2 cut(s)	630, 776
BcnI	CCSGG	2 cut(s)	348, 963
BcoDI	GTCTC	2 cut(s)	261, 567
BfaI	CTAG	3 cut(s)	176, 303, 843
BfmI	CTRYAG	1 cut(s)	1015
BfuI	GTATCC	2 cut(s)	630, 776
BisI	GCNGC	6 cut(s)	312, 315, 414, 441, 444, 558
BlnI	CCTAGG	1 cut(s)	842
BlsI	GCNGC	6 cut(s)	313, 316, 415, 442, 445, 559
Bme1390I	CCNGG	3 cut(s)	197, 348, 963
Bme18I	GGWCC	2 cut(s)	45, 839
BmgT120I	GGNCC	2 cut(s)	45, 839
BmiI	GGNNCC	3 cut(s)	923, 1060, 1196
BmrFI	CCNGG	3 cut(s)	197, 348, 963
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	10, 723
BmuI	ACTGGG	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	203, 1148
BpuMI	CCSGG	2 cut(s)	348, 963
BsaBI	GATNNNNATC	2 cut(s)	24, 750
BsaHI	GRCGYC	1 cut(s)	1181
BsaJI	CCNNGG	5 cut(s)	196, 777, 842, 875, 961
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	6 cut(s)	258, 288, 1050, 1080, 1102, 1132
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	6 cut(s)	73, 287, 521, 721, 800, 1196
Bse3DI	GCAATG	3 cut(s)	408, 986, 1088
Bse8I	GATNNNNATC	2 cut(s)	24, 750
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	5 cut(s)	196, 777, 842, 875, 961
BseGI	GGATG	3 cut(s)	291, 593, 598
BseJI	GATNNNNATC	2 cut(s)	24, 750
BseMI	GCAATG	3 cut(s)	408, 986, 1088
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	6 cut(s)	73, 287, 521, 721, 800, 1196
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	5 cut(s)	301, 400, 430, 452, 569
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	106, 347, 804, 963
BslFI	GGGAC	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	261, 567
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	805
Bsp1286I	GDGCHC	2 cut(s)	359, 698
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	166, 536, 745, 1005, 1112
Bsp19I	CCATGG	1 cut(s)	875
BspACI	CCGC	5 cut(s)	233, 311, 460, 729, 926
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	923, 1060, 1196
BspPI	GGATC	2 cut(s)	740, 1013
BsrDI	GCAATG	3 cut(s)	408, 986, 1088
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	6 cut(s)	73, 287, 521, 721, 800, 1196
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	5 cut(s)	196, 777, 842, 875, 961
BssMI	GATC	5 cut(s)	166, 536, 745, 1005, 1112
BssNI	GRCGYC	1 cut(s)	1181
BssT1I	CCWWGG	3 cut(s)	777, 842, 875
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	859
BstACI	GRCGYC	1 cut(s)	1181
BstAUI	TGTACA	1 cut(s)	885
BstDEI	CTNAG	2 cut(s)	399, 660
BstDSI	CCRYGG	1 cut(s)	875
BstF5I	GGATG	3 cut(s)	291, 593, 598
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	5 cut(s)	169, 539, 748, 1008, 1115
BstMAI	GTCTC	2 cut(s)	261, 567
BstMBI	GATC	5 cut(s)	166, 536, 745, 1005, 1112
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 566, 809
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	440, 742
BstSCI	CCNGG	3 cut(s)	195, 346, 961
BstSFI	CTRYAG	1 cut(s)	1015
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	5 cut(s)	301, 400, 430, 452, 569
BsuI	GTATCC	2 cut(s)	630, 776
BtgI	CCRYGG	1 cut(s)	875
BtsCI	GGATG	3 cut(s)	291, 593, 598
BtsIMutI	CAGTG	1 cut(s)	514
CaiI	CAGNNNCTG	2 cut(s)	398, 446
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	45, 839
CseI	GACGC	1 cut(s)	982
Csp6I	GTAC	6 cut(s)	66, 193, 724, 850, 872, 886
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	6 cut(s)	42, 437, 581, 739, 876, 952
CviQI	GTAC	6 cut(s)	66, 193, 724, 850, 872, 886
DdeI	CTNAG	2 cut(s)	399, 660
DpnI	GATC	5 cut(s)	168, 538, 747, 1007, 1114
DpnII	GATC	5 cut(s)	166, 536, 745, 1005, 1112
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
Eco130I	CCWWGG	3 cut(s)	777, 842, 875
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	2 cut(s)	45, 839
Eco57I	CTGAAG	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	3 cut(s)	777, 842, 875
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	3 cut(s)	777, 842, 875
FaeI	CATG	6 cut(s)	45, 440, 584, 742, 879, 955
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	41, 436, 580, 738, 875, 951
FauI	CCCGC	1 cut(s)	933
Fnu4HI	GCNGC	6 cut(s)	312, 315, 414, 441, 444, 558
FokI	GGATG	3 cut(s)	298, 585, 600
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	6 cut(s)	312, 315, 414, 441, 444, 558
FspBI	CTAG	3 cut(s)	176, 303, 843
GluI	GCNGC	6 cut(s)	312, 315, 414, 441, 444, 558
GsaI	CCCAGC	1 cut(s)	387
HapII	CCGG	4 cut(s)	106, 347, 804, 963
HgaI	GACGC	1 cut(s)	982
Hin1I	GRCGYC	1 cut(s)	1181
Hin1II	CATG	6 cut(s)	45, 440, 584, 742, 879, 955
HincII	GTYRAC	1 cut(s)	1150
HindII	GTYRAC	1 cut(s)	1150
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	51, 336
HpaII	CCGG	4 cut(s)	106, 347, 804, 963
HphI	GGTGA	2 cut(s)	700, 1147
Hpy166II	GTNNAC	3 cut(s)	666, 726, 1150
Hpy188I	TCNGA	5 cut(s)	453, 474, 603, 624, 943
Hpy188III	TCNNGA	4 cut(s)	48, 393, 1165, 1198
Hpy8I	GTNNAC	3 cut(s)	666, 726, 1150
HpyAV	CCTTC	4 cut(s)	217, 483, 685, 1036
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	1181
HpyCH4V	TGCA	5 cut(s)	95, 149, 378, 440, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 566, 809
HpyF3I	CTNAG	2 cut(s)	399, 660
HpySE526I	ACGT	1 cut(s)	1181
Hsp92I	GRCGYC	1 cut(s)	1181
Hsp92II	CATG	6 cut(s)	45, 440, 584, 742, 879, 955
Kzo9I	GATC	5 cut(s)	166, 536, 745, 1005, 1112
LmnI	GCTCC	4 cut(s)	349, 362, 1030, 1058
Lsp1109I	GCAGC	5 cut(s)	301, 400, 430, 452, 569
LweI	GCATC	2 cut(s)	10, 723
MaeI	CTAG	3 cut(s)	176, 303, 843
MaeII	ACGT	1 cut(s)	1181
MaeIII	GTNAC	3 cut(s)	209, 432, 895
MalI	GATC	5 cut(s)	168, 538, 747, 1007, 1114
MboI	GATC	5 cut(s)	166, 536, 745, 1005, 1112
MboII	GAAGA	6 cut(s)	46, 161, 289, 832, 846, 1051
MhlI	GDGCHC	2 cut(s)	359, 698
MluCI	AATT	7 cut(s)	13, 79, 111, 151, 245, 373, 388
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	125, 537, 667, 670, 1048, 1172
MseI	TTAA	4 cut(s)	110, 114, 206, 681
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	383, 443
MspI	CCGG	4 cut(s)	106, 347, 804, 963
MspR9I	CCNGG	3 cut(s)	197, 348, 963
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	239, 566, 809
NciI	CCSGG	2 cut(s)	348, 963
NcoI	CCATGG	1 cut(s)	875
NdeII	GATC	5 cut(s)	166, 536, 745, 1005, 1112
NlaIII	CATG	6 cut(s)	45, 440, 584, 742, 879, 955
NlaIV	GGNNCC	3 cut(s)	923, 1060, 1196
NmuCI	GTSAC	2 cut(s)	209, 432
NspI	RCATGY	2 cut(s)	440, 742
PacI	TTAATTAA	1 cut(s)	114
PciI	ACATGT	1 cut(s)	738
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	51, 336
PfoI	TCCNGGA	1 cut(s)	346
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	313, 316, 415, 442, 445, 559
PscI	ACATGT	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	923, 1060, 1196
PspPI	GGNCC	2 cut(s)	45, 839
PstNI	CAGNNNCTG	2 cut(s)	398, 446
PvuII	CAGCTG	2 cut(s)	383, 443
RsaI	GTAC	6 cut(s)	67, 194, 725, 851, 873, 887
RsaNI	GTAC	6 cut(s)	66, 193, 724, 850, 872, 886
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	110, 114, 206, 681
SatI	GCNGC	6 cut(s)	312, 315, 414, 441, 444, 558
Sau3AI	GATC	5 cut(s)	166, 536, 745, 1005, 1112
Sau96I	GGNCC	2 cut(s)	45, 839
ScrFI	CCNGG	3 cut(s)	197, 348, 963
SduI	GDGCHC	2 cut(s)	359, 698
SfaNI	GCATC	2 cut(s)	10, 723
SfcI	CTRYAG	1 cut(s)	1015
SinI	GGWCC	2 cut(s)	45, 839
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	182, 1163
SmoI	CTYRAG	2 cut(s)	182, 1163
Sse9I	AATT	7 cut(s)	13, 79, 111, 151, 245, 373, 388
SsiI	CCGC	5 cut(s)	233, 311, 460, 729, 926
SspMI	CTAG	3 cut(s)	176, 303, 843
StyD4I	CCNGG	3 cut(s)	195, 346, 961
StyI	CCWWGG	3 cut(s)	777, 842, 875
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	1184
TaqI	TCGA	2 cut(s)	993, 1095
TasI	AATT	7 cut(s)	13, 79, 111, 151, 245, 373, 388
TatI	WGTACW	2 cut(s)	723, 885
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	51, 336
Tru1I	TTAA	4 cut(s)	110, 114, 206, 681
Tru9I	TTAA	4 cut(s)	110, 114, 206, 681
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	2 cut(s)	209, 432
TseI	GCWGC	5 cut(s)	314, 413, 440, 443, 557
Tsp45I	GTSAC	2 cut(s)	209, 432
TspDTI	ATGAA	4 cut(s)	17, 569, 583, 587
TspRI	CASTG	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	45, 839
XapI	RAATTY	4 cut(s)	13, 151, 245, 388
XceI	RCATGY	2 cut(s)	440, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmaJI	CCTAGG	1 cut(s)	842
XspI	CTAG	3 cut(s)	176, 303, 843
ZraI	GACGTC	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.