Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002320.1

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

131269 .. 132958

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002320.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgagaactacaccattgctggtcttgttgctcggtcttgttggtgtgatccagtacgttgcgggtgcagcggagcacaatggagctccgttccctgaggtcgaggggggactgagagctggttttccgaaggggtttgtgttcggaacggcgacgtctgcttatcaggtggaaggcatggccaacaaggaaggtcgtggacctagcattagggataccttcgttaaaatcccaggaaagattgcaaataatgatacagcagatgttacagtggaccaatatcaccgttacaaagaagacattgatatcatgaaaaacctaaattttgatgcctatcggttctcaatatcatggtccagaatcttcccagatggtactgggaaagtgaattggaaaggggttgcatactacaaccggttaattaactacctactcaaaagaggcattactccttatgcaaatttgtatcactatgatcttcccctagcacttgagcaaaagtacctggggttgttaagtgacaaagtagtgaaggattttgcggattacgcagaattttgcttcaaaacatttggagacagagtgaagaactggatgacattcaatgagcctagagtggcggctgctcttggctatgacaatggattctttgctccgggacggtgctccaaagcttatggaaattgcacagctgggaattcaggaactgagccttacattgctgctcatcatttgattttgtcacatgcagctgctgttcagagataccgcgaaaagtatcagaaaacacaaaaaggaaggattggtattgtcttggattttcactggtatgagcctcttaccagatcaaaggctgacagatatgcagctcaaagggcaagagactttcatgttggatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

300

Amino Acids

33.81

Weight (kDa)

9.26

Isoelectric Point (pI)

17.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	771
AciI	CCGC	5 cut(s)	62, 71, 542, 620, 769
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	4 cut(s)	322, 460, 554, 697
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	56, 376, 503
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	565, 604
AjnI	CCWGG	2 cut(s)	232, 504
AluBI	AGCT	6 cut(s)	86, 119, 674, 692, 752, 869
AluI	AGCT	6 cut(s)	86, 119, 674, 692, 752, 869
Alw21I	GWGCWC	3 cut(s)	78, 88, 668
Alw26I	GTCTC	2 cut(s)	570, 876
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	2 cut(s)	707, 755
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	6 cut(s)	68, 623, 722, 749, 752, 866
ApoI	RAATTY	4 cut(s)	322, 460, 554, 697
AsiGI	ACCGGT	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	200, 274, 354
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	3 cut(s)	200, 274, 354
AxyI	CCTNAGG	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	3 cut(s)	78, 88, 668
BbvI	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
BccI	CCATC	2 cut(s)	365, 891
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	234, 506
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	570, 876
BfaI	CTAG	3 cut(s)	204, 485, 612
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	7 cut(s)	69, 621, 624, 723, 750, 753, 867
BlsI	GCNGC	7 cut(s)	70, 622, 625, 724, 751, 754, 868
Bme1390I	CCNGG	3 cut(s)	234, 506, 657
Bme18I	GGWCC	3 cut(s)	200, 274, 354
BmgT120I	GGNCC	3 cut(s)	200, 274, 354
BmrFI	CCNGG	3 cut(s)	234, 506, 657
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	232, 505
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	4 cut(s)	52, 382, 596, 830
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	14, 717
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	234, 506
BseDI	CCNNGG	2 cut(s)	232, 505
BseGI	GGATG	2 cut(s)	600, 902
BseJI	GATNNNNATC	1 cut(s)	333
BseMI	GCAATG	2 cut(s)	14, 717
BseMII	CTCAG	3 cut(s)	87, 104, 699
BseNI	ACTGG	4 cut(s)	52, 382, 596, 830
BseXI	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	771
BshFI	GGCC	1 cut(s)	182
BshTI	ACCGGT	1 cut(s)	414
BsiHKAI	GWGCWC	3 cut(s)	78, 88, 668
BsiSI	CCGG	2 cut(s)	415, 656
BslFI	GGGAC	2 cut(s)	123, 672
BsmAI	GTCTC	2 cut(s)	570, 876
BsmFI	GGGAC	2 cut(s)	123, 672
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	78, 88, 668
Bsp143I	GATC	3 cut(s)	48, 475, 845
BspACI	CCGC	5 cut(s)	62, 71, 542, 620, 769
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	88, 105, 700
BspFNI	CGCG	1 cut(s)	771
BspHI	TCATGA	1 cut(s)	309
BspPI	GGATC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	14, 717
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	52, 382, 596, 830
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	232, 505
BssMI	GATC	3 cut(s)	48, 475, 845
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	234, 506
Bst4CI	ACNGT	3 cut(s)	271, 287, 663
BstACI	GRCGYC	1 cut(s)	155
BstDEI	CTNAG	3 cut(s)	96, 113, 708
BstF5I	GGATG	2 cut(s)	600, 902
BstFNI	CGCG	1 cut(s)	771
BstKTI	GATC	3 cut(s)	51, 478, 848
BstMAI	GTCTC	2 cut(s)	570, 876
BstMBI	GATC	3 cut(s)	48, 475, 845
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 158, 548, 875
BstNI	CCWGG	2 cut(s)	234, 506
BstNSI	RCATGY	1 cut(s)	749
BstSCI	CCNGG	3 cut(s)	232, 504, 655
BstUI	CGCG	1 cut(s)	771
BstV1I	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
BstV2I	GAAGAC	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	600, 902
BtsIMutI	CAGTG	2 cut(s)	276, 823
CaiI	CAGNNNCTG	2 cut(s)	707, 755
CciI	TCATGA	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	200, 274, 354
Csp6I	GTAC	3 cut(s)	55, 375, 502
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	5 cut(s)	178, 310, 351, 746, 890
CviQI	GTAC	3 cut(s)	55, 375, 502
DdeI	CTNAG	3 cut(s)	96, 113, 708
DpnI	GATC	3 cut(s)	50, 477, 847
DpnII	GATC	3 cut(s)	48, 475, 845
EaeI	YGGCCR	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	3 cut(s)	200, 274, 354
Eco53kI	GAGCTC	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	2 cut(s)	232, 504
EcoRV	GATATC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	5 cut(s)	181, 313, 354, 749, 893
FaqI	GGGAC	2 cut(s)	123, 672
FatI	CATG	5 cut(s)	177, 309, 350, 745, 889
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	7 cut(s)	69, 621, 624, 723, 750, 753, 867
FokI	GGATG	1 cut(s)	607
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	7 cut(s)	69, 621, 624, 723, 750, 753, 867
FspBI	CTAG	3 cut(s)	204, 485, 612
GluI	GCNGC	7 cut(s)	69, 621, 624, 723, 750, 753, 867
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	415, 656
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	5 cut(s)	181, 313, 354, 749, 893
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	2 cut(s)	360, 645
HpaII	CCGG	2 cut(s)	415, 656
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	200, 274
Hpy188I	TCNGA	4 cut(s)	129, 146, 762, 783
Hpy188III	TCNNGA	3 cut(s)	310, 357, 702
Hpy8I	GTNNAC	2 cut(s)	200, 274
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	6 cut(s)	124, 167, 185, 229, 526, 792
HpyCH4III	ACNGT	3 cut(s)	271, 287, 663
HpyCH4IV	ACGT	2 cut(s)	57, 155
HpyCH4V	TGCA	7 cut(s)	68, 245, 404, 458, 687, 749, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 158, 548, 875
HpyF3I	CTNAG	3 cut(s)	96, 113, 708
HpySE526I	ACGT	2 cut(s)	57, 155
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	5 cut(s)	181, 313, 354, 749, 893
Kzo9I	GATC	3 cut(s)	48, 475, 845
LmnI	GCTCC	5 cut(s)	73, 83, 91, 658, 671
Lsp1109I	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	204, 485, 612
MaeII	ACGT	2 cut(s)	57, 155
MaeIII	GTNAC	4 cut(s)	265, 287, 518, 741
MalI	GATC	3 cut(s)	50, 477, 847
MboI	GATC	3 cut(s)	48, 475, 845
MboII	GAAGA	4 cut(s)	308, 355, 470, 598
MhlI	GDGCHC	3 cut(s)	78, 88, 668
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	7 cut(s)	322, 388, 420, 460, 554, 682, 697
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	874
MnlI	CCTC	4 cut(s)	91, 97, 434, 846
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	4 cut(s)	225, 419, 423, 515
MslI	CAYNNNNRTG	1 cut(s)	828
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	71, 692, 752
MspI	CCGG	2 cut(s)	415, 656
MspR9I	CCNGG	3 cut(s)	234, 506, 657
MvaI	CCWGG	2 cut(s)	234, 506
MvnI	CGCG	1 cut(s)	771
MwoI	GCNNNNNNNGC	4 cut(s)	68, 158, 548, 875
NciI	CCSGG	1 cut(s)	657
NdeII	GATC	3 cut(s)	48, 475, 845
NlaIII	CATG	5 cut(s)	181, 313, 354, 749, 893
NmuCI	GTSAC	2 cut(s)	518, 741
NspI	RCATGY	1 cut(s)	749
PacI	TTAATTAA	1 cut(s)	423
PagI	TCATGA	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	360, 645
PfoI	TCCNGGA	1 cut(s)	655
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	7 cut(s)	70, 622, 625, 724, 751, 754, 868
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	232, 504
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	232, 504
PspPI	GGNCC	3 cut(s)	200, 274, 354
PstNI	CAGNNNCTG	2 cut(s)	707, 755
PvuII	CAGCTG	2 cut(s)	692, 752
RsaI	GTAC	3 cut(s)	56, 376, 503
RsaNI	GTAC	3 cut(s)	55, 375, 502
RseI	CAYNNNNRTG	1 cut(s)	828
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	225, 419, 423, 515
SatI	GCNGC	7 cut(s)	69, 621, 624, 723, 750, 753, 867
Sau3AI	GATC	3 cut(s)	48, 475, 845
Sau96I	GGNCC	3 cut(s)	200, 274, 354
ScrFI	CCNGG	3 cut(s)	234, 506, 657
SduI	GDGCHC	3 cut(s)	78, 88, 668
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	3 cut(s)	200, 274, 354
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	7 cut(s)	322, 388, 420, 460, 554, 682, 697
SsiI	CCGC	5 cut(s)	62, 71, 542, 620, 769
SspMI	CTAG	3 cut(s)	204, 485, 612
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	3 cut(s)	232, 504, 655
TaaI	ACNGT	3 cut(s)	271, 287, 663
TaiI	ACGT	2 cut(s)	60, 158
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	7 cut(s)	322, 388, 420, 460, 554, 682, 697
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	2 cut(s)	360, 645
Tru1I	TTAA	4 cut(s)	225, 419, 423, 515
Tru9I	TTAA	4 cut(s)	225, 419, 423, 515
TscAI	CASTG	2 cut(s)	276, 830
TseFI	GTSAC	2 cut(s)	518, 741
TseI	GCWGC	6 cut(s)	68, 623, 722, 749, 752, 866
Tsp45I	GTSAC	2 cut(s)	518, 741
TspDTI	ATGAA	2 cut(s)	326, 878
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	276, 830
VpaK11BI	GGWCC	3 cut(s)	200, 274, 354
XapI	RAATTY	4 cut(s)	322, 460, 554, 697
XceI	RCATGY	1 cut(s)	749
XspI	CTAG	3 cut(s)	204, 485, 612
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.