Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8186916.1

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 693

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8186916.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

catcaaaacaaaacaaaaccaaatgccttgggataccaaaatgactggaatgcaggatttgcttttgagaagaatggagtgcccattggtcctagggcatactctccttggctctaccaagtaccatggggtatgtacaagtgtctaacctacataaaagagcattatgggaacccgcctgtgattttatccgaaaacggcatggataaccccggaaaccagacgcttccaaaggcattgcacgataccaataggatcaacttctacagaagctatttggagcaactgaagaaggcagttgatgagggagccaacgtggtaggctactttgcttggtcattgctcgacaacttcgaatggagatcgggtttcacttcaaggtttggcatagtctatgttgatttcaccacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

137

Amino Acids

15.78

Weight (kDa)

8.0

Isoelectric Point (pI)

21.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	123, 137
AgsI	TTSAA	1 cut(s)	378
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
AlwI	GGATC	1 cut(s)	263
AspA2I	CCTAGG	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	397
AsuII	TTCGAA	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	84
BceAI	ACGGC	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	26
BlnI	CCTAGG	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	173, 310
BmrFI	CCNGG	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	5 cut(s)	27, 92, 107, 125, 211
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 352, 382
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	2 cut(s)	236, 338
BseDI	CCNNGG	5 cut(s)	27, 92, 107, 125, 211
BseMI	GCAATG	2 cut(s)	236, 338
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	255, 362
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	173, 310
BspPI	GGATC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	354
BsrDI	GCAATG	2 cut(s)	236, 338
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	5 cut(s)	27, 92, 107, 125, 211
BssMI	GATC	2 cut(s)	255, 362
BssT1I	CCWWGG	4 cut(s)	27, 92, 107, 125
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	354
BstDSI	CCRYGG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	258, 365
BstMBI	GATC	2 cut(s)	255, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	122, 136
CviAII	CATG	2 cut(s)	126, 202
CviJI	RGCY	4 cut(s)	112, 273, 311, 324
CviKI_1	RGCY	4 cut(s)	112, 273, 311, 324
CviQI	GTAC	2 cut(s)	122, 136
DpnI	GATC	2 cut(s)	257, 364
DpnII	GATC	2 cut(s)	255, 362
Eco130I	CCWWGG	4 cut(s)	27, 92, 107, 125
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	308
EcoT14I	CCWWGG	4 cut(s)	27, 92, 107, 125
ErhI	CCWWGG	4 cut(s)	27, 92, 107, 125
FaeI	CATG	2 cut(s)	129, 205
FaiI	YATR	8 cut(s)	100, 127, 134, 155, 168, 203, 389, 396
FatI	CATG	2 cut(s)	125, 201
FauI	CCCGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	93
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	129, 205
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	53, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	129, 205
Kzo9I	GATC	2 cut(s)	255, 362
LmnI	GCTCC	2 cut(s)	280, 308
LpnPI	CCDG	5 cut(s)	31, 39, 192, 226, 233
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	257, 364
MboI	GATC	2 cut(s)	255, 362
MboII	GAAGA	2 cut(s)	82, 301
MhlI	GDGCHC	1 cut(s)	84
MnlI	CCTC	1 cut(s)	298
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	255, 362
NlaIII	CATG	2 cut(s)	129, 205
NlaIV	GGNNCC	2 cut(s)	173, 310
NspV	TTCGAA	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	173, 310
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	123, 137
RsaNI	GTAC	2 cut(s)	122, 136
Sau3AI	GATC	2 cut(s)	255, 362
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	4 cut(s)	152, 275, 318, 383
SfcI	CTRYAG	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	354
SinI	GGWCC	1 cut(s)	89
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	4 cut(s)	27, 92, 107, 125
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	345, 354
TatI	WGTACW	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	89
XmaJI	CCTAGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.