Prupe.5G230400_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
17598236 .. 17601345
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G230400.1

Sequence Viewer

Length: 1542 bp
ATGAGAGCCCCATTGTTGTTGCTTAGTCTTCTTCTTGTTATCCAGTGCATCGCGCATGCAACTGAGCACAATGAAGCTCCAGTCCTTGATCCAGAGAGTCTCAATTTGGACACCGGTGGGCTGAGCAGAGCCAGCTTCCCCAAGGGCTTTGTCTTCGGAACGGCGACTTCCGCTTATCAAGTCGAAGGCATGGCCCACAAGGAGGGTCGTGGCCCCAGCATTTGGGATGAGTTTATTAAAATTCCCGGAATTGTTGCCAATAATGGTACAGGAGAAGTCGCTGTGGACCAGTATCACCGGTACAAACAAGATGTTGATCTCATGGCAAACCTAAATTTCGATGCCTATCGGTTCTCAATATCATGGTCCAGAATTTTCCCAGATGGTACTGGGAAAGTCAATTGGAAAGGAGTTGCATACTACAACCGGTTAATTAACTACTTGATCAAAAGAGGCATTACTCCCTATGCAAACTTATACCATTATGATCTTCCCCTTGCACTCGAGAAGAAGTACTTGGGATTGTTAAATGACGAAGTAGTGAAAGATTTTGCTGACTATGCAGAGTTTTGTTTCAAGACATTTGGAGACAGAGTGAAGAACTGGATGACCTTTAATGAGCCTAGAGTGGTGGCTGCTCTTGGCTATGATAATGGTTTCTTTGCTCCGGCACGGTGTTCCAAAGCATATGGAAACTGCACAGCTGGAAATTCATCCACCGAGCCTTATATCGCTGCTCATCATTTGATTTTATCACATGGAGCTGCAGTTCAGAGATACCGTGAGAAGTATCAGAAAGTACAAAAAGGAAGGATTGGTATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACCAGATCAAAGGCTGACAACTATGCGGCTCAGAGGGCCAGAGACTTTCATGTTGGATGGTTCATCCATCCCATTGTGTATGGAGAGTATCCAAGAACAATCCAAGAAATAGTTGGTGATAGGCTACCTAAGTTCACCAAAGAGGAGGTTAAAATGGTGAAGGGCTCAATGGATTTTGTTGGCATCAACCAATATACTGCTTACTACATGTACGACCCACATCAATCAAAACCAAAGGTCTTGGGGTACCAGCAGGACTGGAATGCAGGATTTGCTTACAAGAAGAATGGAGTGCCTATTGGTCCTAGGGCATATTCTAGTTGGCTCTACCAAGTACCGTGGGGTTTGTACAAAGCTTTAACGTACATAAAAGAACATTATGGAAACCCACCAGTGATTTTATCTGAAAATGGCATGGATAATCCTGGCAATTGGACACGTGCAGAGGTATTGCACGACACCACAAGGATCAAGTTCTACAAGAGCTATATGATTCAGCTGAAGAAGGCAGTTGATGAAGGAGCCAATGTGCTGGGCTACTTCGCGTGGTCATTGCTCGACAACTTTGAATGGAGGTTGGGATACACTTCAAGATTTGGCATAGTCTATGTTGATTTCAAAACCCTCGAGAGATACCCAAAAATGTCCGCCTACTGGTTCAAGAAGCTACTCACCAAAACCAAGCACTAG

Protein Analysis

514

Amino Acids

58.93

Weight (kDa)

9.11

Isoelectric Point (pI)

20.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1098
AccB1I GGYRCC 1 cut(s) 1098
AccB7I CCANNNNNTGG 1 cut(s) 222
AccII CGCG 2 cut(s) 53, 1397
AciI CCGC 3 cut(s) 171, 878, 1500
AclWI GGATC 2 cut(s) 83, 1328
AcsI RAATTY 4 cut(s) 240, 334, 372, 709
AcuI CTGAAG 1 cut(s) 1373
AcvI CACGTG 1 cut(s) 1292
AfiI CCNNNNNNNGG 3 cut(s) 202, 222, 1506
AflIII ACRYGT 2 cut(s) 1059, 1289
AgeI ACCGGT 3 cut(s) 113, 297, 426
AgsI TTSAA 5 cut(s) 577, 1421, 1443, 1471, 1513
AjnI CCWGG 1 cut(s) 1276
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AloI GAACNNNNNNTCC 2 cut(s) 753, 785
AluBI AGCT 8 cut(s) 77, 135, 704, 764, 1208, 1338, 1351, 1519
AluI AGCT 8 cut(s) 77, 135, 704, 764, 1208, 1338, 1351, 1519
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 104, 582, 888
AlwI GGATC 2 cut(s) 83, 1328
Ama87I CYCGRG 2 cut(s) 503, 1478
AoxI GGCC 3 cut(s) 192, 211, 888
ApeKI GCWGC 3 cut(s) 635, 734, 764
ApoI RAATTY 4 cut(s) 240, 334, 372, 709
AsiGI ACCGGT 3 cut(s) 113, 297, 426
Asp718I GGTACC 1 cut(s) 1098
AspA2I CCTAGG 1 cut(s) 1157
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 6 cut(s) 193, 212, 286, 366, 888, 1154
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 5 cut(s) 287, 979, 980, 1021, 1516
AvaI CYCGRG 2 cut(s) 503, 1478
AvaII GGWCC 3 cut(s) 286, 366, 1154
AvrII CCTAGG 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 1098
BanII GRGCYC 2 cut(s) 10, 1019
BbrPI CACGTG 1 cut(s) 1292
BbsI GAAGAC 2 cut(s) 20, 145
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 622, 721, 751
BccI CCATC 3 cut(s) 377, 903, 927
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 1278
BciVI GTATCC 2 cut(s) 951, 1427
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 3 cut(s) 104, 582, 888
BfaI CTAG 4 cut(s) 624, 1158, 1170, 1540
BfmI CTRYAG 1 cut(s) 765
BfuI GTATCC 2 cut(s) 951, 1427
BisI GCNGC 4 cut(s) 636, 735, 765, 879
BlnI CCTAGG 1 cut(s) 1157
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 4 cut(s) 637, 736, 766, 880
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 2 cut(s) 246, 1278
Bme18I GGWCC 3 cut(s) 286, 366, 1154
BmeT110I CYCGRG 2 cut(s) 503, 1478
BmgT120I GGNCC 6 cut(s) 193, 212, 286, 366, 888, 1154
BmiI GGNNCC 3 cut(s) 214, 1100, 1375
BmrFI CCNGG 2 cut(s) 246, 1278
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 57, 331, 1044
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 2 cut(s) 20, 145
BpmI CTGGAG 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 1292
BsaBI GATNNNNATC 2 cut(s) 315, 345
BsaJI CCNNGG 3 cut(s) 141, 1157, 1190
BsaWI WCCGGW 3 cut(s) 113, 297, 426
BsaXI ACNNNNNCTCC 6 cut(s) 579, 609, 753, 783, 1365, 1395
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 222, 1506
Bse118I RCCGGY 3 cut(s) 113, 297, 426
Bse1I ACTGG 8 cut(s) 43, 80, 289, 394, 608, 1115, 1244, 1511
Bse3DI GCAATG 1 cut(s) 1403
Bse8I GATNNNNATC 2 cut(s) 315, 345
BseBI CCWGG 1 cut(s) 1278
BseDI CCNNGG 3 cut(s) 141, 1157, 1190
BseGI GGATG 6 cut(s) 232, 612, 713, 914, 915, 919
BseJI GATNNNNATC 2 cut(s) 315, 345
BseLI CCNNNNNNNGG 3 cut(s) 202, 222, 1506
BseMI GCAATG 1 cut(s) 1403
BseMII CTCAG 3 cut(s) 54, 113, 896
BseNI ACTGG 8 cut(s) 43, 80, 289, 394, 608, 1115, 1244, 1511
BseRI GAGGAG 1 cut(s) 1010
BseXI GCAGC 3 cut(s) 622, 721, 751
BseYI CCCAGC 2 cut(s) 215, 1384
BsgI GTGCAG 2 cut(s) 682, 1314
Bsh1236I CGCG 2 cut(s) 53, 1397
BshFI GGCC 3 cut(s) 194, 213, 890
BshNI GGYRCC 1 cut(s) 1098
BshTI ACCGGT 3 cut(s) 113, 297, 426
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 503, 1478
BsiSI CCGG 5 cut(s) 114, 246, 298, 427, 668
BslI CCNNNNNNNGG 3 cut(s) 202, 222, 1506
BsmAI GTCTC 3 cut(s) 104, 582, 888
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 3 cut(s) 194, 213, 890
BsoBI CYCGRG 2 cut(s) 503, 1478
Bsp1286I GDGCHC 3 cut(s) 10, 69, 1019
Bsp1407I TGTACA 1 cut(s) 1200
Bsp143I GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 3 cut(s) 171, 878, 1500
BspANI GGCC 3 cut(s) 194, 213, 890
BspCNI CTCAG 3 cut(s) 55, 114, 895
BspFNI CGCG 2 cut(s) 53, 1397
BspLI GGNNCC 3 cut(s) 214, 1100, 1375
BspMAI CTGCAG 1 cut(s) 769
BspPI GGATC 2 cut(s) 83, 1328
BspT107I GGYRCC 1 cut(s) 1098
BsrDI GCAATG 1 cut(s) 1403
BsrFI RCCGGY 3 cut(s) 113, 297, 426
BsrGI TGTACA 1 cut(s) 1200
BsrI ACTGG 8 cut(s) 43, 80, 289, 394, 608, 1115, 1244, 1511
BssAI RCCGGY 3 cut(s) 113, 297, 426
BssECI CCNNGG 3 cut(s) 141, 1157, 1190
BssMI GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
BssT1I CCWWGG 2 cut(s) 141, 1157
Bst2UI CCWGG 1 cut(s) 1278
Bst4CI ACNGT 3 cut(s) 675, 782, 1191
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstAUI TGTACA 1 cut(s) 1200
BstBAI YACGTR 1 cut(s) 1292
BstC8I GCNNGC 2 cut(s) 57, 133
BstDEI CTNAG 5 cut(s) 23, 63, 122, 882, 981
BstDSI CCRYGG 1 cut(s) 1190
BstF5I GGATG 6 cut(s) 232, 612, 713, 914, 915, 919
BstFNI CGCG 2 cut(s) 53, 1397
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 6 cut(s) 91, 319, 447, 490, 860, 1323
BstMAI GTCTC 3 cut(s) 104, 582, 888
BstMBI GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
BstMWI GCNNNNNNNGC 5 cut(s) 132, 170, 560, 887, 1124
BstNI CCWGG 1 cut(s) 1278
BstNSI RCATGY 2 cut(s) 59, 1063
BstSCI CCNGG 2 cut(s) 244, 1276
BstSFI CTRYAG 1 cut(s) 765
BstUI CGCG 2 cut(s) 53, 1397
BstV1I GCAGC 3 cut(s) 622, 721, 751
BstV2I GAAGAC 2 cut(s) 20, 145
BstXI CCANNNNNNTGG 1 cut(s) 1384
BsuI GTATCC 2 cut(s) 951, 1427
BsuRI GGCC 3 cut(s) 194, 213, 890
BtgI CCRYGG 1 cut(s) 1190
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 6 cut(s) 232, 612, 713, 914, 915, 919
BtsIMutI CAGTG 2 cut(s) 50, 1251
Cac8I GCNNGC 2 cut(s) 57, 133
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 3 cut(s) 113, 297, 426
Cfr13I GGNCC 6 cut(s) 193, 212, 286, 366, 888, 1154
CspAI ACCGGT 3 cut(s) 113, 297, 426
CspCI CAANNNNNGTGG 2 cut(s) 1172, 1207
CviAII CATG 8 cut(s) 56, 190, 322, 363, 758, 902, 1060, 1267
DdeI CTNAG 5 cut(s) 23, 63, 122, 882, 981
DpnI GATC 6 cut(s) 90, 318, 446, 489, 859, 1322
DpnII GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
EciI GGCGGA 1 cut(s) 1489
Eco130I CCWWGG 2 cut(s) 141, 1157
Eco24I GRGCYC 2 cut(s) 10, 1019
Eco47I GGWCC 3 cut(s) 286, 366, 1154
Eco57I CTGAAG 1 cut(s) 1373
Eco72I CACGTG 1 cut(s) 1292
Eco88I CYCGRG 2 cut(s) 503, 1478
EcoRII CCWGG 1 cut(s) 1276
EcoT14I CCWWGG 2 cut(s) 141, 1157
EcoT38I GRGCYC 2 cut(s) 10, 1019
ErhI CCWWGG 2 cut(s) 141, 1157
FaeI CATG 8 cut(s) 59, 193, 325, 366, 761, 905, 1063, 1270
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 8 cut(s) 55, 189, 321, 362, 757, 901, 1059, 1266
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 444
Fnu4HI GCNGC 4 cut(s) 636, 735, 765, 879
FokI GGATG 6 cut(s) 239, 619, 700, 902, 906, 921
FriOI GRGCYC 2 cut(s) 10, 1019
Fsp4HI GCNGC 4 cut(s) 636, 735, 765, 879
FspBI CTAG 4 cut(s) 624, 1158, 1170, 1540
GlaI GCGC 1 cut(s) 54
GluI GCNGC 4 cut(s) 636, 735, 765, 879
GsaI CCCAGC 2 cut(s) 219, 1388
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 3 cut(s) 194, 213, 890
HapII CCGG 5 cut(s) 114, 246, 298, 427, 668
HhaI GCGC 1 cut(s) 55
Hin1II CATG 8 cut(s) 59, 193, 325, 366, 761, 905, 1063, 1270
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 1206
HinfI GANTC 2 cut(s) 97, 1345
HpaII CCGG 5 cut(s) 114, 246, 298, 427, 668
HphI GGTGA 5 cut(s) 287, 979, 980, 1021, 1516
Hpy166II GTNNAC 2 cut(s) 286, 987
Hpy188I TCNGA 5 cut(s) 158, 774, 795, 885, 1258
Hpy188III TCNNGA 7 cut(s) 92, 369, 505, 577, 1443, 1480, 1513
Hpy8I GTNNAC 2 cut(s) 286, 987
HpyAV CCTTC 5 cut(s) 179, 804, 1006, 1351, 1364
HpyCH4III ACNGT 3 cut(s) 675, 782, 1191
HpyCH4IV ACGT 2 cut(s) 1214, 1291
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 170, 560, 887, 1124
HpyF3I CTNAG 5 cut(s) 23, 63, 122, 882, 981
HpySE526I ACGT 2 cut(s) 1214, 1291
Hsp92II CATG 8 cut(s) 59, 193, 325, 366, 761, 905, 1063, 1270
HspAI GCGC 1 cut(s) 53
KpnI GGTACC 1 cut(s) 1102
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
LmnI GCTCC 4 cut(s) 82, 670, 761, 1373
Lsp1109I GCAGC 3 cut(s) 622, 721, 751
LweI GCATC 3 cut(s) 57, 331, 1044
MaeI CTAG 4 cut(s) 624, 1158, 1170, 1540
MaeII ACGT 2 cut(s) 1214, 1291
MalI GATC 6 cut(s) 90, 318, 446, 489, 859, 1322
MboI GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
MboII GAAGA 8 cut(s) 20, 23, 145, 482, 520, 610, 1147, 1366
MfeI CAATTG 2 cut(s) 400, 1282
MhlI GDGCHC 3 cut(s) 10, 69, 1019
MluCI AATT 9 cut(s) 103, 240, 249, 334, 372, 400, 432, 709, 1282
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 9 cut(s) 196, 446, 858, 879, 988, 991, 1291, 1419, 1487
MseI TTAA 7 cut(s) 237, 431, 435, 527, 615, 1002, 1211
MspA1I CMGCKG 2 cut(s) 704, 1351
MspI CCGG 5 cut(s) 114, 246, 298, 427, 668
MspR9I CCNGG 2 cut(s) 246, 1278
MunI CAATTG 2 cut(s) 400, 1282
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 1 cut(s) 1278
MvnI CGCG 2 cut(s) 53, 1397
MwoI GCNNNNNNNGC 5 cut(s) 132, 170, 560, 887, 1124
NciI CCSGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 688
NdeII GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
NlaIII CATG 8 cut(s) 59, 193, 325, 366, 761, 905, 1063, 1270
NlaIV GGNNCC 3 cut(s) 214, 1100, 1375
NspI RCATGY 2 cut(s) 59, 1063
PacI TTAATTAA 1 cut(s) 435
PaeI GCATGC 1 cut(s) 59
PaeR7I CTCGAG 2 cut(s) 503, 1478
PciI ACATGT 1 cut(s) 1059
PctI GAATGC 1 cut(s) 1120
PfeI GAWTC 1 cut(s) 1345
PflMI CCANNNNNTGG 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 244
PinAI ACCGGT 3 cut(s) 113, 297, 426
PkrI GCNGC 4 cut(s) 637, 736, 766, 880
PleI GAGTC 1 cut(s) 105
PmaCI CACGTG 1 cut(s) 1292
PmlI CACGTG 1 cut(s) 1292
PpsI GAGTC 1 cut(s) 105
Ppu21I YACGTR 1 cut(s) 1292
PscI ACATGT 1 cut(s) 1059
Psp6I CCWGG 1 cut(s) 1276
PspCI CACGTG 1 cut(s) 1292
PspFI CCCAGC 2 cut(s) 215, 1384
PspGI CCWGG 1 cut(s) 1276
PspN4I GGNNCC 3 cut(s) 214, 1100, 1375
PspPI GGNCC 6 cut(s) 193, 212, 286, 366, 888, 1154
PstI CTGCAG 1 cut(s) 769
PvuII CAGCTG 2 cut(s) 704, 1351
SaqAI TTAA 7 cut(s) 237, 431, 435, 527, 615, 1002, 1211
SatI GCNGC 4 cut(s) 636, 735, 765, 879
Sau3AI GATC 6 cut(s) 88, 316, 444, 487, 857, 1320
Sau96I GGNCC 6 cut(s) 193, 212, 286, 366, 888, 1154
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 246, 1278
SduI GDGCHC 3 cut(s) 10, 69, 1019
SfaNI GCATC 3 cut(s) 57, 331, 1044
SfcI CTRYAG 1 cut(s) 765
Sfr274I CTCGAG 2 cut(s) 503, 1478
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 3 cut(s) 286, 366, 1154
SlaI CTCGAG 2 cut(s) 503, 1478
SmlI CTYRAG 2 cut(s) 503, 1478
SmoI CTYRAG 2 cut(s) 503, 1478
SphI GCATGC 1 cut(s) 59
Sse9I AATT 9 cut(s) 103, 240, 249, 334, 372, 400, 432, 709, 1282
SsiI CCGC 3 cut(s) 171, 878, 1500
SspMI CTAG 4 cut(s) 624, 1158, 1170, 1540
StyD4I CCNGG 2 cut(s) 244, 1276
StyI CCWWGG 2 cut(s) 141, 1157
TaaI ACNGT 3 cut(s) 675, 782, 1191
TaiI ACGT 2 cut(s) 1217, 1294
TaqI TCGA 5 cut(s) 183, 339, 504, 1410, 1479
TasI AATT 9 cut(s) 103, 240, 249, 334, 372, 400, 432, 709, 1282
TatI WGTACW 3 cut(s) 513, 799, 1200
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 1 cut(s) 1345
Tru1I TTAA 7 cut(s) 237, 431, 435, 527, 615, 1002, 1211
Tru9I TTAA 7 cut(s) 237, 431, 435, 527, 615, 1002, 1211
TscAI CASTG 2 cut(s) 50, 1251
TseI GCWGC 3 cut(s) 635, 734, 764
TspDTI ATGAA 5 cut(s) 87, 702, 890, 904, 1383
TspRI CASTG 2 cut(s) 50, 1251
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 3 cut(s) 286, 366, 1154
XapI RAATTY 4 cut(s) 240, 334, 372, 709
XceI RCATGY 2 cut(s) 59, 1063
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
XhoI CTCGAG 2 cut(s) 503, 1478
XmaJI CCTAGG 1 cut(s) 1157
XspI CTAG 4 cut(s) 624, 1158, 1170, 1540
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.