Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Reverse (-)

20522401 .. 20528976

Gene Structure 6576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG203200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGTCAAGAGGGTCAGGAGCCGCCAGCCAACAGCGGCCAGATCCCGCTACGACCACCGCCGGACCACCCACAATGCCTCTCCTCCACCGACTCGGAACCGTCGTCATCATCCTTCCGCCCTCCCCGGCACGCCATAGGAAGACACCACCCCATTCCACCGTCACCTTCCCCAGATCGTACACCGACAGCCCAACCCAGGTCGGGTTAATCCGATCCAAGCCAAGCCCCGCCGCCACGACCTCATCACCTCCAGCCCGCCTCCTAGCCCGTGCTACCCCATCAAGCCGCCGACCTTGCATCCATGGCAGTCCAGGCGCCGTTCCAGCCCGCTCCGCACCCAACCCCGGCCAGCGAGAACAAGACCACACTCCTTTGCACACCAGCGATCAGATCGAAGGTGCAAACCACAGACCAACAGCCCAAAGGGCCAACAATTCCCGTCCGACGACAGCGTCACCGGACGCGCCGCCGGACGGAGAGAGAGAAAAGTTTCTAGGGTTTTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

17.97

Weight (kDa)

11.36

Isoelectric Point (pI)

73.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	333
AccII	CGCG	1 cut(s)	467
AclWI	GGATC	2 cut(s)	38, 210
AcoI	YGGCCR	2 cut(s)	38, 349
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	4 cut(s)	199, 204, 347, 476
AgsI	TTSAA	1 cut(s)	507
AjnI	CCWGG	2 cut(s)	198, 313
AlwI	GGATC	2 cut(s)	38, 210
AoxI	GGCC	3 cut(s)	38, 349, 429
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	320, 469
AspS9I	GGNCC	2 cut(s)	65, 429
AsuC2I	CCSGG	2 cut(s)	128, 348
AsuHPI	GGTGA	3 cut(s)	157, 240, 450
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	149
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	200, 315
BcnI	CCSGG	2 cut(s)	128, 348
BfaI	CTAG	2 cut(s)	266, 497
BfoI	RGCGCY	1 cut(s)	321
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	5 cut(s)	24, 38, 234, 289, 470
BlsI	GCNGC	5 cut(s)	25, 39, 235, 290, 471
Bme1390I	CCNGG	4 cut(s)	128, 200, 315, 348
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	65, 429
BmiI	GGNNCC	3 cut(s)	22, 100, 319
BmrFI	CCNGG	4 cut(s)	128, 200, 315, 348
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	128, 348
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	4 cut(s)	126, 198, 304, 346
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 204, 347, 476
BseBI	CCWGG	2 cut(s)	200, 315
BseDI	CCNNGG	4 cut(s)	126, 198, 304, 346
BseGI	GGATG	2 cut(s)	111, 300
BseLI	CCNNNNNNNGG	4 cut(s)	199, 204, 347, 476
BseRI	GAGGAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	40, 351, 431
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	5 cut(s)	63, 128, 348, 461, 473
BslI	CCNNNNNNNGG	4 cut(s)	199, 204, 347, 476
BsnI	GGCC	3 cut(s)	40, 351, 431
Bsp143I	GATC	5 cut(s)	43, 176, 215, 388, 393
Bsp19I	CCATGG	1 cut(s)	304
BspANI	GGCC	3 cut(s)	40, 351, 431
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	3 cut(s)	22, 100, 319
BspPI	GGATC	2 cut(s)	38, 210
BspT107I	GGYRCC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	333
BssECI	CCNNGG	4 cut(s)	126, 198, 304, 346
BssMI	GATC	5 cut(s)	43, 176, 215, 388, 393
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	200, 315
Bst4CI	ACNGT	2 cut(s)	103, 163
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	5 cut(s)	28, 133, 259, 331, 353
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	111, 300
BstFNI	CGCG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	320, 469
BstKTI	GATC	5 cut(s)	46, 179, 218, 391, 396
BstMBI	GATC	5 cut(s)	43, 176, 215, 388, 393
BstMWI	GCNNNNNNNGC	6 cut(s)	297, 306, 315, 326, 335, 428
BstNI	CCWGG	2 cut(s)	200, 315
BstSCI	CCNGG	4 cut(s)	126, 198, 313, 346
BstUI	CGCG	1 cut(s)	467
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	40, 351, 431
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	111, 300
Cac8I	GCNNGC	5 cut(s)	28, 133, 259, 331, 353
CfoI	GCGC	2 cut(s)	320, 469
Cfr13I	GGNCC	2 cut(s)	65, 429
CseI	GACGC	2 cut(s)	444, 473
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	1 cut(s)	181
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	5 cut(s)	45, 178, 217, 390, 395
DpnII	GATC	5 cut(s)	43, 176, 215, 388, 393
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	2 cut(s)	38, 349
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	198, 313
EcoT14I	CCWWGG	1 cut(s)	304
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	308
FaiI	YATR	3 cut(s)	138, 306, 511
FatI	CATG	1 cut(s)	304
FauI	CCCGC	4 cut(s)	55, 238, 266, 338
Fnu4HI	GCNGC	5 cut(s)	24, 38, 234, 289, 470
FokI	GGATG	2 cut(s)	98, 287
Fsp4HI	GCNGC	5 cut(s)	24, 38, 234, 289, 470
FspBI	CTAG	2 cut(s)	266, 497
GlaI	GCGC	2 cut(s)	319, 468
GluI	GCNGC	5 cut(s)	24, 38, 234, 289, 470
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	40, 351, 431
HapII	CCGG	5 cut(s)	63, 128, 348, 461, 473
HgaI	GACGC	2 cut(s)	444, 473
HhaI	GCGC	2 cut(s)	320, 469
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	2 cut(s)	318, 467
HinP1I	GCGC	2 cut(s)	318, 467
HinfI	GANTC	2 cut(s)	5, 93
HpaII	CCGG	5 cut(s)	63, 128, 348, 461, 473
HphI	GGTGA	3 cut(s)	157, 240, 450
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	4 cut(s)	98, 215, 393, 447
Hpy188III	TCNNGA	2 cut(s)	9, 18
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	2 cut(s)	107, 451
HpyAV	CCTTC	3 cut(s)	125, 178, 392
HpyCH4III	ACNGT	2 cut(s)	103, 163
HpyCH4V	TGCA	3 cut(s)	300, 379, 404
HpyF10VI	GCNNNNNNNGC	6 cut(s)	297, 306, 315, 326, 335, 428
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	2 cut(s)	318, 467
KasI	GGCGCC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	43, 176, 215, 388, 393
LmnI	GCTCC	2 cut(s)	20, 338
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	266, 497
MaeIII	GTNAC	2 cut(s)	163, 456
MalI	GATC	5 cut(s)	45, 178, 217, 390, 395
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	5 cut(s)	43, 176, 215, 388, 393
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	1 cut(s)	436
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	14, 87
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	7 cut(s)	5, 90, 95, 133, 253, 261, 272
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	5 cut(s)	63, 128, 348, 461, 473
MspR9I	CCNGG	4 cut(s)	128, 200, 315, 348
MvaI	CCWGG	2 cut(s)	200, 315
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	6 cut(s)	297, 306, 315, 326, 335, 428
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	2 cut(s)	128, 348
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	5 cut(s)	43, 176, 215, 388, 393
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	3 cut(s)	22, 100, 319
NmuCI	GTSAC	2 cut(s)	163, 456
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	492
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	25, 39, 235, 290, 471
PleI	GAGTC	2 cut(s)	13, 87
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	13, 87
Psp6I	CCWGG	2 cut(s)	198, 313
PspGI	CCWGG	2 cut(s)	198, 313
PspN4I	GGNNCC	3 cut(s)	22, 100, 319
PspPI	GGNCC	2 cut(s)	65, 429
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	454
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	5 cut(s)	24, 38, 234, 289, 470
Sau3AI	GATC	5 cut(s)	43, 176, 215, 388, 393
Sau96I	GGNCC	2 cut(s)	65, 429
SchI	GAGTC	2 cut(s)	14, 87
ScrFI	CCNGG	4 cut(s)	128, 200, 315, 348
SetI	ASST	6 cut(s)	170, 204, 245, 253, 298, 403
SfaNI	GCATC	1 cut(s)	309
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	436
SspDI	GGCGCC	1 cut(s)	317
SspMI	CTAG	2 cut(s)	266, 497
StyD4I	CCNGG	4 cut(s)	126, 198, 313, 346
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	103, 163
TaqI	TCGA	1 cut(s)	396
TasI	AATT	1 cut(s)	436
TauI	GCSGC	5 cut(s)	26, 40, 236, 291, 472
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseFI	GTSAC	2 cut(s)	163, 456
Tsp45I	GTSAC	2 cut(s)	163, 456
TspGWI	ACGGA	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	266, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.