Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001264

Physical Location & Seq

Genomic Coordinates Forward (+)

1480699 .. 1482360

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG018400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGAACTACACCATTGCTGGTCTTGTTGCTCAGTCTTGTTGGTGTGATCCAGTACGTTGCGGGTGCAGCTGGGCACAATGGAGCTCCTTTCCCTGAGGCCGAGGGCGGGCTGAGGGCCAGTTTTCCCAAGGGGTTTGTGTTCGGAACGGCGACGTCTGCTTATCAAGTCGAAGGGATGGCCAACAAGGAAGGTCGTGGACCTAGCATTTGGGATACCTTCGTTAAAATCCCAGGAACTATTGCAAATAATGATACAGCAGATGTTACAGTGGATCAATATCACCGTTACAAAGAAGACATTGATATCATGAAAAACCTAAATTTTGATGCCTATCGGTTCTCAATATCATGGTCCAGAATCTTCCCAGATGGTACTGGGAAAGTGAATTGGAAAGGAGTTGCATACTACAATCGGTTAATTAACTACTTGCTTAAAAGAGGCATTACTCCTTATGCAAATTTGTATCACTATGATCTTCCCCTAGCACTTGAGCAAAAGTATCTGGGATTGTTAAGTGACAAAGTGGTGAAGGATTTTGCGGATTACGCGGAATTTTGCTTCAAGACATTTGGAGACAGAGTCAAGAACTGGTTGACATTCAATGAGCCTAGAGTGGTGGCTGCTCTTGGCTATGACAATGGAATAAATGCTCCGGCACGGTGCTCCAAAGCTTATGGAAATTGCACAGCTGGGAGTTCAGGAACTGAGCCTTATATTGCTGCTCATCATTTGATTTTGTCACATGCAGCTGCTGTTCAGAGATACCGCAAAAAGTATCAGAAAATACAAAAGGGAAAGATTGGTATTCTCTTGGATTTTCTTTGGTACGAACCTCTTACCAGATCAAAGGCTGACAGATATGCAGCTCAAAGGGCAATAGACTTTCATGTTGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015923 GO:0015926 GO:0016787 GO:0016798 GO:0022626 GO:0030312 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0047668 GO:0071704 GO:0071944 GO:0080079 GO:0080081 GO:0080082 GO:0080083 GO:1901135 GO:1901657 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

300

Amino Acids

33.63

Weight (kDa)

9.25

Isoelectric Point (pI)

20.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	40 - 300	1.2e-94	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18070 AT3G18080
fragaria_vesca	FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090 FvH4_5g17090
malus_domestica	MD06G1229100.v1.1
prunus_persica	Prupe.5G230400_v2.0.a1
pyrus_communis	pycom06g20030
rosa_chinensis	RchiOBHm_Chr7g0178721 RchiOBHm_Chr7g0178731 RchiOBHm_Chr7g0178741 RchiOBHm_Chr7g0178751
rosa_laevigata	RLG00000005418 RLG00000005419
rosa_multiflora	Rmu_co8186916.1_g000001 Rmu_co8266963.1_g000001 Rmu_sc0002320.1_g000021 Rmu_sc0002320.1_g000022 Rmu_sc0002320.1_g000023 Rmu_sc0002320.1_g000027 Rmu_sc0025325.1_g000010 Rmu_sc0025325.1_g000011
rosa_roxburghii	Rroxscaffold_3G00274640
rosa_rugosa	Rorug06G0418900 Rorug06G0419000 Rorug06G0419100
rosa_samantha	Rh2AG182000 Rh2AG203200 Rh2AG531500 Rh5CG480100 Rh7AG018300 Rh7AG018400 Rh7AG018500 Rh7AG018600 Rh7BG017900 Rh7BG018000 Rh7CG018600 Rh7CG018800 Rh7DG018400 Rh7DG018500
rosa_wichuraiana	Rw7G001480 Rw7G001490 Rw7G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	551
AciI	CCGC	5 cut(s)	62, 108, 542, 551, 769
AclWI	GGATC	2 cut(s)	43, 282
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	322, 460, 554
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	56, 376, 830
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	565, 604
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	6 cut(s)	71, 86, 674, 692, 752, 869
AluI	AGCT	6 cut(s)	71, 86, 674, 692, 752, 869
Alw21I	GWGCWC	2 cut(s)	88, 668
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	2 cut(s)	43, 282
AlwNI	CAGNNNCTG	2 cut(s)	707, 755
AoxI	GGCC	3 cut(s)	99, 117, 180
ApeKI	GCWGC	6 cut(s)	68, 623, 722, 749, 752, 866
ApoI	RAATTY	3 cut(s)	322, 460, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspS9I	GGNCC	3 cut(s)	117, 200, 354
AsuHPI	GGTGA	2 cut(s)	275, 541
AvaII	GGWCC	2 cut(s)	200, 354
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	78
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	88, 668
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
BccI	CCATC	3 cut(s)	172, 365, 891
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	3 cut(s)	204, 485, 612
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	6 cut(s)	69, 624, 723, 750, 753, 867
BlsI	GCNGC	6 cut(s)	70, 625, 724, 751, 754, 868
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	200, 354
BmgT120I	GGNCC	3 cut(s)	117, 200, 354
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	2 cut(s)	279, 333
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	102, 129, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	4 cut(s)	52, 120, 382, 596
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	2 cut(s)	279, 333
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	102, 129, 232
BseGI	GGATG	2 cut(s)	183, 902
BseJI	GATNNNNATC	2 cut(s)	279, 333
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	4 cut(s)	46, 87, 104, 699
BseNI	ACTGG	4 cut(s)	52, 120, 382, 596
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
BseYI	CCCAGC	2 cut(s)	71, 692
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	3 cut(s)	101, 119, 182
BsiHKAI	GWGCWC	2 cut(s)	88, 668
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	570
BsnI	GGCC	3 cut(s)	101, 119, 182
Bsp1286I	GDGCHC	3 cut(s)	78, 88, 668
Bsp143I	GATC	4 cut(s)	48, 274, 475, 845
BspACI	CCGC	5 cut(s)	62, 108, 542, 551, 769
BspANI	GGCC	3 cut(s)	101, 119, 182
BspCNI	CTCAG	4 cut(s)	45, 88, 105, 700
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	1 cut(s)	309
BspPI	GGATC	2 cut(s)	43, 282
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	4 cut(s)	52, 120, 382, 596
BssECI	CCNNGG	3 cut(s)	102, 129, 232
BssMI	GATC	4 cut(s)	48, 274, 475, 845
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	271, 287, 663
BstACI	GRCGYC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	4 cut(s)	32, 96, 113, 708
BstF5I	GGATG	2 cut(s)	183, 902
BstFNI	CGCG	1 cut(s)	551
BstKTI	GATC	4 cut(s)	51, 277, 478, 848
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	4 cut(s)	48, 274, 475, 845
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 158, 548, 875
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	749
BstSCI	CCNGG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
BstV2I	GAAGAC	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	101, 119, 182
BtsCI	GGATG	2 cut(s)	183, 902
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	2 cut(s)	707, 755
CciI	TCATGA	1 cut(s)	309
Cfr13I	GGNCC	3 cut(s)	117, 200, 354
Csp6I	GTAC	3 cut(s)	55, 375, 829
CviAII	CATG	4 cut(s)	310, 351, 746, 890
CviQI	GTAC	3 cut(s)	55, 375, 829
DdeI	CTNAG	4 cut(s)	32, 96, 113, 708
DpnI	GATC	4 cut(s)	50, 276, 477, 847
DpnII	GATC	4 cut(s)	48, 274, 475, 845
EaeI	YGGCCR	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	200, 354
Eco53kI	GAGCTC	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	313, 354, 749, 893
FatI	CATG	4 cut(s)	309, 350, 745, 889
FauI	CCCGC	2 cut(s)	55, 101
Fnu4HI	GCNGC	6 cut(s)	69, 624, 723, 750, 753, 867
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	6 cut(s)	69, 624, 723, 750, 753, 867
FspBI	CTAG	3 cut(s)	204, 485, 612
GluI	GCNGC	6 cut(s)	69, 624, 723, 750, 753, 867
GsaI	CCCAGC	2 cut(s)	75, 696
HaeIII	GGCC	3 cut(s)	101, 119, 182
HapII	CCGG	1 cut(s)	656
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	313, 354, 749, 893
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	2 cut(s)	360, 582
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	2 cut(s)	275, 541
Hpy166II	GTNNAC	2 cut(s)	200, 597
Hpy188I	TCNGA	3 cut(s)	146, 762, 783
Hpy188III	TCNNGA	5 cut(s)	310, 357, 565, 586, 702
Hpy8I	GTNNAC	2 cut(s)	200, 597
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	4 cut(s)	167, 185, 229, 526
HpyCH4III	ACNGT	3 cut(s)	271, 287, 663
HpyCH4IV	ACGT	2 cut(s)	57, 155
HpyCH4V	TGCA	7 cut(s)	68, 245, 404, 458, 687, 749, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 158, 548, 875
HpyF3I	CTNAG	4 cut(s)	32, 96, 113, 708
HpySE526I	ACGT	2 cut(s)	57, 155
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	313, 354, 749, 893
Kzo9I	GATC	4 cut(s)	48, 274, 475, 845
LmnI	GCTCC	4 cut(s)	83, 91, 658, 671
Lsp1109I	GCAGC	6 cut(s)	80, 610, 709, 739, 761, 878
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	204, 485, 612
MaeII	ACGT	2 cut(s)	57, 155
MaeIII	GTNAC	4 cut(s)	265, 287, 518, 741
MalI	GATC	4 cut(s)	50, 276, 477, 847
MboI	GATC	4 cut(s)	48, 274, 475, 845
MboII	GAAGA	3 cut(s)	308, 355, 470
MhlI	GDGCHC	3 cut(s)	78, 88, 668
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	6 cut(s)	322, 388, 420, 460, 554, 682
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	874
MnlI	CCTC	5 cut(s)	91, 97, 108, 434, 846
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	5 cut(s)	225, 419, 423, 435, 515
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	71, 692, 752
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	68, 158, 548, 875
NdeII	GATC	4 cut(s)	48, 274, 475, 845
NlaIII	CATG	4 cut(s)	313, 354, 749, 893
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	518, 741
NspI	RCATGY	1 cut(s)	749
PacI	TTAATTAA	1 cut(s)	423
PagI	TCATGA	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	360
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	6 cut(s)	70, 625, 724, 751, 754, 868
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	232
PspFI	CCCAGC	2 cut(s)	71, 692
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	117, 200, 354
PstNI	CAGNNNCTG	2 cut(s)	707, 755
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	3 cut(s)	71, 692, 752
RsaI	GTAC	3 cut(s)	56, 376, 830
RsaNI	GTAC	3 cut(s)	55, 375, 829
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	5 cut(s)	225, 419, 423, 435, 515
SatI	GCNGC	6 cut(s)	69, 624, 723, 750, 753, 867
Sau3AI	GATC	4 cut(s)	48, 274, 475, 845
Sau96I	GGNCC	3 cut(s)	117, 200, 354
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	3 cut(s)	78, 88, 668
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	2 cut(s)	200, 354
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	6 cut(s)	322, 388, 420, 460, 554, 682
SsiI	CCGC	5 cut(s)	62, 108, 542, 551, 769
SspMI	CTAG	3 cut(s)	204, 485, 612
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	271, 287, 663
TaiI	ACGT	2 cut(s)	60, 158
TaqI	TCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	322, 388, 420, 460, 554, 682
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	5 cut(s)	225, 419, 423, 435, 515
Tru9I	TTAA	5 cut(s)	225, 419, 423, 435, 515
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	518, 741
TseI	GCWGC	6 cut(s)	68, 623, 722, 749, 752, 866
Tsp45I	GTSAC	2 cut(s)	518, 741
TspDTI	ATGAA	2 cut(s)	326, 878
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	200, 354
XapI	RAATTY	3 cut(s)	322, 460, 554
XceI	RCATGY	1 cut(s)	749
XspI	CTAG	3 cut(s)	204, 485, 612
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.