AT3G19900

Domain of unknown function (DUF3067)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007081
Physical Location & Seq
Reverse (-)
6922470 .. 6925175
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19900.2

Sequence Viewer

Length: 669 bp
ATGATGAGCATTGTATCAAGTCATCATCACTGTCAACAATCTGTTATACACGAACGTAGCGGTATAGGAACAATATCTAAGGTTTCTTGTTCGAGATATTGCGGTCCGTGTTTCTCTGGACGACTGGCTTTCTCTCATAGCCTCTGCTTGAAGACTACTTATGGGAAAACTGATAGGAGAAAGTTTTCAAGAATTTGCAGTATTGTGGATGATGAGGGGAATCTAGATAATTCGGATGACGAGGAAAAGGAATCACTCGATGATAAAACTAAAAGGCAAGCGAATGATATGAATCGGGCTAATCTTGAAAGAATGGTTGGGTCAGATGATTCTGCATTTAACGGCTTAGATCTTGCAACCCTCATCAGACAGAAGTATGGAAAATCTTATGATGTTCAACTCATCAAGAAGGAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAGAGAACAGAGGTCTTTTCCTCTAACCGAAGAAGAATATATACTTAGACTTGACGATGTAGCCAACATGTTGAAATGCTGGGGAGCAGTCTCACATATCCGTAGCAGCCTAGCAAAGTCGAAGGAGCGACCTCGGATAGGGAAGGCTGTCAGCATTTTCATAGACATGGATTCGACAGGGGGAAGAGCAAATGAATGGATTTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3067

Protein Analysis

222

Amino Acids

25.34

Weight (kDa)

8.77

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3067 PF11267 117 - 157 3e-09 Domain of unknown function (DUF3067)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 102
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 596
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 5 cut(s) 151, 189, 308, 398, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
Alw26I GTCTC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 564
ApoI RAATTY 1 cut(s) 192
Asp700I GAANNNNTTC 2 cut(s) 184, 413
AspS9I GGNCC 1 cut(s) 104
AvaII GGWCC 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 576
BceAI ACGGC 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 2 cut(s) 224, 569
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 565
BlsI GCNGC 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 590
BseGI GGATG 2 cut(s) 214, 241
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 576
BseYI CCCAGC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 553
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 2 cut(s) 60, 102
BspQI GCTCTTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 590
BssMI GATC 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 78, 346, 503
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 2 cut(s) 214, 241
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 1 cut(s) 349
BstNSI RCATGY 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 576
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BtsCI GGATG 2 cut(s) 214, 241
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 104
CpoI CGGWCCG 1 cut(s) 104
Csp6I GTAC 1 cut(s) 457
CspI CGGWCCG 1 cut(s) 104
CviAII CATG 4 cut(s) 418, 448, 526, 625
CviJI RGCY 7 cut(s) 128, 141, 299, 345, 521, 567, 605
CviKI_1 RGCY 7 cut(s) 128, 141, 299, 345, 521, 567, 605
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 3 cut(s) 78, 346, 503
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 594
FaeI CATG 4 cut(s) 421, 451, 529, 628
FatI CATG 4 cut(s) 417, 447, 525, 624
Fnu4HI GCNGC 1 cut(s) 565
FokI GGATG 2 cut(s) 221, 248
Fsp4HI GCNGC 1 cut(s) 565
FspBI CTAG 2 cut(s) 224, 569
GluI GCNGC 1 cut(s) 565
GsaI CCCAGC 1 cut(s) 541
Hin1II CATG 4 cut(s) 421, 451, 529, 628
HincII GTYRAC 1 cut(s) 35
HindII GTYRAC 1 cut(s) 35
HinfI GANTC 6 cut(s) 220, 251, 292, 329, 427, 629
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 4 cut(s) 235, 325, 368, 594
Hpy188III TCNNGA 6 cut(s) 93, 117, 189, 224, 305, 406
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 403, 574, 595
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 198, 335, 356, 437
HpyF3I CTNAG 3 cut(s) 78, 346, 503
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 4 cut(s) 421, 451, 529, 628
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 2 cut(s) 542, 583
LpnPI CCDG 4 cut(s) 102, 110, 523, 621
Lsp1109I GCAGC 1 cut(s) 576
MaeI CTAG 2 cut(s) 224, 569
MaeII ACGT 1 cut(s) 55
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 6 cut(s) 163, 422, 436, 500, 503, 654
MflI RGATCY 1 cut(s) 349
MluCI AATT 2 cut(s) 192, 229
MnlI CCTC 7 cut(s) 152, 208, 235, 371, 462, 489, 600
MroXI GAANNNNTTC 2 cut(s) 184, 413
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 623
NdeII GATC 1 cut(s) 349
NlaIII CATG 4 cut(s) 421, 451, 529, 628
NspI RCATGY 1 cut(s) 529
PciI ACATGT 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 637
PdmI GAANNNNTTC 2 cut(s) 184, 413
PfeI GAWTC 6 cut(s) 220, 251, 292, 329, 427, 629
PkrI GCNGC 1 cut(s) 566
PscI ACATGT 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 623
Rsr2I CGGWCCG 1 cut(s) 104
RsrII CGGWCCG 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 565
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 1 cut(s) 104
SetI ASST 4 cut(s) 58, 84, 473, 592
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 2 cut(s) 192, 229
SsiI CCGC 2 cut(s) 60, 102
SspMI CTAG 2 cut(s) 224, 569
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 58
TaqI TCGA 4 cut(s) 92, 258, 578, 632
TasI AATT 2 cut(s) 192, 229
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 6 cut(s) 220, 251, 292, 329, 427, 629
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 35
TseI GCWGC 1 cut(s) 564
TspDTI ATGAA 5 cut(s) 305, 406, 455, 607, 666
TspGWI ACGGA 2 cut(s) 96, 548
TspRI CASTG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 1 cut(s) 192
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 2 cut(s) 184, 413
XspI CTAG 2 cut(s) 224, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.