Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010778.1

Orthogroup ID

OG0007081

Physical Location & Seq

Genomic Coordinates Forward (+)

11298 .. 13855

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010778.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ctgttggcttggcctcaccaacaggatatgacgagcattatttcaagccaccattgtaattggtcatttgggattcaagagaacgctaacacaggattcaacaaagttctgcttcctggatatacttcacattttccttcaagaggattggttttttccaatggtaactgtcacattcgttgtcaaactgatcggagatgtaggcctattttctccagtacggtagatgacataaatccagatgactctgaagatgaaaaggatgcgaaggaaaactccaaagctgaagctggaggggggaataatgaaatggtcagagagaatcttgaaagacttgttggtacagatgactccagctttagtgggatagacctggcaactcttattaggaacaagtatgggaggtcctatgatgttcaactgataaagaaggaattcctgggaagaaacctcttggctatgaatgtgatgtggaagtacagggagcagagatcctttccacttaccgaagaagagtatctattgaggcttgatgatgttgcaaacaacttgaagtgctggggagctgtgtcacatatcagaaacagcctagcaacggtgaaagagaggcctcggataggaaaggctgttagcatttttatagatatggacgagtctggaggccgtgcaaatgaatggatttacaataataatctgcaacaagattacttggaaaagaaaacagaaacaagataccatcaaatgatccaaatcaaagtcatgcatgtatcacaaggagttgttccccgggttgatgggatcttggcgatgtcaagggcacttggcagcatagagttgaagtatgagggacatatcagctgtagacctagttgtggtggagatgatacaaagcgcgccgagtttcttcactttcttgtgttggcagtggtggagtgtggaaggtggtgtcgaaccaacaagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3067

Protein Analysis

321

Amino Acids

36.58

Weight (kDa)

6.86

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19900 AT3G19900
fragaria_vesca	FvH4_4g36660 FvH4_4g36660 FvH4_4g36660
malus_domestica	MD16G1006000.v1.1
prunus_persica	Prupe.1G344600_v2.0.a1
pyrus_communis	pycom16g00580
rosa_chinensis	RchiOBHm_Chr4g0446361 RchiOBHm_Chr4g0446371
rosa_laevigata	RLG00000005668
rosa_multiflora	Rmu_co8384533.1_g000001 Rmu_co8420189.1_g000001 Rmu_sc0008360.1_g000001 Rmu_sc0010778.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386800 Rroxscaffold_5G00386810
rosa_rugosa	Rorug04G0370700 Rorug04G0370800
rosa_samantha	Rh4AG432300 Rh4BG441500 Rh4CG458800 Rh4DG440200
rosa_wichuraiana	Rw4G036910 Rw4G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	862
AccII	CGCG	1 cut(s)	894
AclWI	GGATC	3 cut(s)	486, 739, 806
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	2 cut(s)	270, 306
AfaI	GTAC	3 cut(s)	220, 343, 479
AfiI	CCNNNNNNNGG	4 cut(s)	143, 595, 617, 872
AgsI	TTSAA	8 cut(s)	45, 77, 100, 141, 329, 419, 553, 838
AjnI	CCWGG	3 cut(s)	115, 372, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	6 cut(s)	284, 290, 357, 566, 858, 961
AluI	AGCT	6 cut(s)	284, 290, 357, 566, 858, 961
AlwI	GGATC	3 cut(s)	486, 739, 806
Ama87I	CYCGRG	1 cut(s)	786
AoxI	GGCC	4 cut(s)	11, 203, 608, 661
ApeKI	GCWGC	1 cut(s)	825
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	894, 896
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	2 cut(s)	787, 788
AsuHPI	GGTGA	2 cut(s)	8, 610
AvaI	CYCGRG	1 cut(s)	786
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	820
BbvI	GCAGC	1 cut(s)	837
BccI	CCATC	2 cut(s)	744, 788
BceAI	ACGGC	1 cut(s)	648
BciT130I	CCWGG	3 cut(s)	117, 374, 440
BcnI	CCSGG	2 cut(s)	787, 788
BfaI	CTAG	2 cut(s)	590, 867
BfmI	CTRYAG	1 cut(s)	859
BisI	GCNGC	1 cut(s)	826
BlsI	GCNGC	1 cut(s)	827
Bme1390I	CCNGG	5 cut(s)	117, 374, 440, 787, 788
Bme18I	GGWCC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	405
BmrFI	CCNGG	5 cut(s)	117, 374, 440, 787, 788
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	4 cut(s)	199, 312, 337, 678
BpuMI	CCSGG	2 cut(s)	787, 788
BsaBI	GATNNNNATC	1 cut(s)	749
BsaJI	CCNNGG	4 cut(s)	439, 611, 785, 786
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 595, 617, 872
Bse1I	ACTGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	749
BseBI	CCWGG	3 cut(s)	117, 374, 440
BseDI	CCNNGG	4 cut(s)	439, 611, 785, 786
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	4 cut(s)	143, 595, 617, 872
BseNI	ACTGG	1 cut(s)	216
BsePI	GCGCGC	1 cut(s)	892
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	1 cut(s)	837
BseYI	CCCAGC	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	894
BshFI	GGCC	4 cut(s)	13, 205, 610, 663
BsiHKCI	CYCGRG	1 cut(s)	786
BsiSI	CCGG	1 cut(s)	787
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	4 cut(s)	143, 595, 617, 872
BsmFI	GGGAC	1 cut(s)	861
BsnI	GGCC	4 cut(s)	13, 205, 610, 663
BsoBI	CYCGRG	1 cut(s)	786
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	4 cut(s)	190, 491, 744, 798
BspANI	GGCC	4 cut(s)	13, 205, 610, 663
BspFNI	CGCG	1 cut(s)	894
BspPI	GGATC	3 cut(s)	486, 739, 806
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	439, 611, 785, 786
BssHII	GCGCGC	1 cut(s)	892
BssMI	GATC	4 cut(s)	190, 491, 744, 798
Bst2UI	CCWGG	3 cut(s)	117, 374, 440
Bst4CI	ACNGT	3 cut(s)	170, 223, 598
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	894
BstENI	CCTNNNNNAGG	2 cut(s)	141, 615
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	894
BstHHI	GCGC	2 cut(s)	894, 896
BstKTI	GATC	4 cut(s)	193, 494, 747, 801
BstMBI	GATC	4 cut(s)	190, 491, 744, 798
BstNI	CCWGG	3 cut(s)	117, 374, 440
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	5 cut(s)	115, 372, 438, 785, 786
BstSFI	CTRYAG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	820
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	837
BstX2I	RGATCY	2 cut(s)	491, 798
BstYI	RGATCY	2 cut(s)	491, 798
BsuRI	GGCC	4 cut(s)	13, 205, 610, 663
BtgZI	GCGATG	1 cut(s)	821
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	1 cut(s)	930
Cac8I	GCNNGC	1 cut(s)	894
CfoI	GCGC	2 cut(s)	894, 896
Cfr13I	GGNCC	1 cut(s)	405
Cfr9I	CCCGGG	1 cut(s)	786
Csp6I	GTAC	3 cut(s)	219, 342, 478
CviAII	CATG	2 cut(s)	760, 764
CviQI	GTAC	3 cut(s)	219, 342, 478
DpnI	GATC	4 cut(s)	192, 493, 746, 800
DpnII	GATC	4 cut(s)	190, 491, 744, 798
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco147I	AGGCCT	2 cut(s)	205, 610
Eco47I	GGWCC	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	270, 306
Eco88I	CYCGRG	1 cut(s)	786
EcoNI	CCTNNNNNAGG	2 cut(s)	141, 615
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	3 cut(s)	115, 372, 438
EcoT22I	ATGCAT	1 cut(s)	765
FaeI	CATG	2 cut(s)	763, 767
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	2 cut(s)	759, 763
FblI	GTMKAC	1 cut(s)	862
Fnu4HI	GCNGC	1 cut(s)	826
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	826
FspBI	CTAG	2 cut(s)	590, 867
GlaI	GCGC	2 cut(s)	893, 895
GluI	GCNGC	1 cut(s)	826
GsaI	CCCAGC	1 cut(s)	562
GsuI	CTGGAG	4 cut(s)	199, 312, 337, 678
HaeIII	GGCC	4 cut(s)	13, 205, 610, 663
HapII	CCGG	1 cut(s)	787
HhaI	GCGC	2 cut(s)	894, 896
Hin1II	CATG	2 cut(s)	763, 767
Hin6I	GCGC	2 cut(s)	892, 894
HinP1I	GCGC	2 cut(s)	892, 894
HinfI	GANTC	6 cut(s)	73, 96, 245, 322, 350, 653
HpaII	CCGG	1 cut(s)	787
HphI	GGTGA	2 cut(s)	8, 610
Hpy166II	GTNNAC	1 cut(s)	863
Hpy188I	TCNGA	5 cut(s)	195, 250, 317, 581, 615
Hpy188III	TCNNGA	5 cut(s)	77, 141, 239, 326, 657
Hpy8I	GTNNAC	1 cut(s)	863
HpyAV	CCTTC	4 cut(s)	147, 262, 424, 933
HpyCH4III	ACNGT	3 cut(s)	170, 223, 598
HpyCH4V	TGCA	4 cut(s)	542, 668, 697, 763
Hsp92II	CATG	2 cut(s)	763, 767
HspAI	GCGC	2 cut(s)	892, 894
Kzo9I	GATC	4 cut(s)	190, 491, 744, 798
LmnI	GCTCC	2 cut(s)	484, 563
Lsp1109I	GCAGC	1 cut(s)	837
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	590, 867
MaeIII	GTNAC	3 cut(s)	164, 170, 570
MalI	GATC	4 cut(s)	192, 493, 746, 800
MboI	GATC	4 cut(s)	190, 491, 744, 798
MboII	GAAGA	5 cut(s)	263, 456, 521, 524, 896
MflI	RGATCY	2 cut(s)	491, 798
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	2 cut(s)	58, 434
MlyI	GAGTC	3 cut(s)	239, 344, 662
Mph1103I	ATGCAT	1 cut(s)	765
MroXI	GAANNNNTTC	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	858
MspI	CCGG	1 cut(s)	787
MspR9I	CCNGG	5 cut(s)	117, 374, 440, 787, 788
MvaI	CCWGG	3 cut(s)	117, 374, 440
MvnI	CGCG	1 cut(s)	894
NciI	CCSGG	2 cut(s)	787, 788
NdeII	GATC	4 cut(s)	190, 491, 744, 798
NlaIII	CATG	2 cut(s)	763, 767
NmeAIII	GCCGAG	1 cut(s)	922
NmuCI	GTSAC	2 cut(s)	170, 570
NsiI	ATGCAT	1 cut(s)	765
NspI	RCATGY	1 cut(s)	767
PauI	GCGCGC	1 cut(s)	892
PceI	AGGCCT	2 cut(s)	205, 610
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	3 cut(s)	73, 96, 322
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	827
PleI	GAGTC	3 cut(s)	239, 344, 661
PpsI	GAGTC	3 cut(s)	239, 344, 661
PpuMI	RGGWCCY	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	115, 372, 438
PspFI	CCCAGC	1 cut(s)	558
PspGI	CCWGG	3 cut(s)	115, 372, 438
PspPI	GGNCC	1 cut(s)	405
PspPPI	RGGWCCY	1 cut(s)	405
PsuI	RGATCY	2 cut(s)	491, 798
PteI	GCGCGC	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	858
RsaI	GTAC	3 cut(s)	220, 343, 479
RsaNI	GTAC	3 cut(s)	219, 342, 478
SatI	GCNGC	1 cut(s)	826
Sau3AI	GATC	4 cut(s)	190, 491, 744, 798
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	3 cut(s)	239, 344, 662
ScrFI	CCNGG	5 cut(s)	117, 374, 440, 787, 788
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	859
SinI	GGWCC	1 cut(s)	405
SmaI	CCCGGG	1 cut(s)	788
Sse9I	AATT	2 cut(s)	58, 434
SseBI	AGGCCT	2 cut(s)	205, 610
SspMI	CTAG	2 cut(s)	590, 867
StuI	AGGCCT	2 cut(s)	205, 610
StyD4I	CCNGG	5 cut(s)	115, 372, 438, 785, 786
TaaI	ACNGT	3 cut(s)	170, 223, 598
TaqI	TCGA	1 cut(s)	949
TasI	AATT	2 cut(s)	58, 434
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	73, 96, 322
TscAI	CASTG	1 cut(s)	930
TseFI	GTSAC	2 cut(s)	170, 570
TseI	GCWGC	1 cut(s)	825
Tsp45I	GTSAC	2 cut(s)	170, 570
TspDTI	ATGAA	4 cut(s)	270, 321, 476, 687
TspMI	CCCGGG	1 cut(s)	786
TspRI	CASTG	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	405
XagI	CCTNNNNNAGG	2 cut(s)	141, 615
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	767
XmaI	CCCGGG	1 cut(s)	786
XmiI	GTMKAC	1 cut(s)	862
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	590, 867
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.