Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007081

Physical Location & Seq

Genomic Coordinates Forward (+)

64209209 .. 64213585

Gene Structure 4377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGACCTTTGCCGTTTCCGGTTTCGGTAATTTTCCCGCCAATCAGATACGAGCTTTGGCGCCAATTCACAAAGCAGCCTATGATCATATCATTAGGGTAAGAGGCCATTCCTTCGCCGTCGCTAATCCCAAGGGAGCAGCAATGGGTTCCAGAGCTGCCACCAAAAACAAAACCTTACTGGATATCTTCCAACCCACGACCCGATCCGCCAAACGCTTCAAAACCGATTCTTCCACCCCCAAATCCGATGACGCCATCACCGAGCCTTCTTCTTCTCCGTCAGCCCTCACCCCCGAGCAGAAGTCACGCATAGAATTCCAGAAGCTGCTGGCCAAAGCGAAACGCAACCGCACTATCTGCTCCGGCAGAGTCTCCGATTCCAAGGCCAAAGGTGAAGGAGTGAAATTGGAGGAGCTATTGGTGGAGGACACGTGGCTGACGGCGTTGCCTTCTGAGCTTAAGAAGCCCTACGCCGTCAACCTCAGCAAGTTCGTTGAGAGTGAGATTTCCGGCGCCGGCGGTGGTGGTGTTCCGATATATCCGCCGAGTCACTTGATCTTCAATGCTCTGAACTCCACCCCTTTTGATCGGGTCAAGGCTGTCATTTTGGGCCAGGACCCGTATCATGGGCCGGGTCAGGCTATGGGTCTGTCCTTCTCTGTTCCCCAAGGAGTGAAGGTCCCATCGAGCCTGGTTAATATATTCAAGGAGCTTCACAAAGACGTTGGCTGTTCAATTCCATCTCATGGAAATCTAGAAAAATGGGCTGTTCAGGGTGTTCTGTTGCTCAATGCTGTTCTCACCGTTAGGGATCATCAGGCTAACTCTCATGCAAAGAAAGGATGGGAACAATTTACGGATGCTGTTATCCAAACGATTTCAAAAAAGAAGGAAGGAGTTGTTTTCCTCCTGTGGGGAAACTCCGCACAGCAGAAATCCAGGTTAGTTGATGTGTCGAAGCATCACATTCTTAGAGCGGCACATCCTTCCGGTTTATCTGCATACAGGGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACGAACCAGCTTCTCAAGGAGATGGACTATCTCTGTCAAGTCATGTATGATCGAGGAGGTTTGGACTTGTTCTGGATTCTACTCTACCATATCCCAAACAAGCATCAAACCCAGAAACTATATCTGCTTCTGTTGGCCAGGCCTCACCAACAGGATATGACGAGCATTATTTCAAGCCACCATTGTAATTGGTCATTTGGGATTCAAGAGAACGCTAACACAGGATTCAACAAAGTTCTGCTTCCTGGATATACTTCACATTTTCCTTCAAGAGGATTGGTTTTTTCCAATGGTAACTATCACATTCGTTATCAAACTGATCGGAGATGTAGGCCTATTTTCTCCAGTACGGTAGATGACATAAATCCAGATGACTCTGAAGATGAAAAGGATGCGAAGGAAAATTCCAAAGCTGAAGCTGGAGGGGGGAATAATGAAATGGTCAGAGAGAATCTTGAAAGACTTGTTGGTACAGATGACTCCAGCTTTAGTGGGATAGACCTGGCAACTCTTATTAGGAACAAGTATGGGAGGTCCTATGATGTTCAACTGATAAAGAAGGAGTTCCTGGGAAGAAACCTCTTGGCTATGAATGTGATGTGGAAGTACAGGGAGCAGAGATCCTTTCCACTGACTGAAGAAGAGTATCTATTGAGGCTTGATGATGTTGCAAACAACTTGAAGTGCTGGGGAGCTGTGTCACATATCAGAAACAGCCTAGCAACGGTGAAAGAGAGGCCTCGGATAGGAAAGGCTGTTAGCATTTTTATAGATATGGACGAGTCTGGAGGCCGTGCAAATGAATGGATTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097506 GO:0097510 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 ko05340 map03410 map05340

Pfam Domains

Protein Families

UDG

Protein Analysis

618

Amino Acids

68.98

Weight (kDa)

9.35

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDG	PF03167	197 - 352	5.9e-15	Uracil DNA glycosylase superfamily
DUF3067	PF11267	513 - 616	2e-33	Domain of unknown function (DUF3067)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19900 AT3G19900
fragaria_vesca	FvH4_4g36660 FvH4_4g36660 FvH4_4g36660
malus_domestica	MD16G1006000.v1.1
prunus_persica	Prupe.1G344600_v2.0.a1
pyrus_communis	pycom16g00580
rosa_chinensis	RchiOBHm_Chr4g0446361 RchiOBHm_Chr4g0446371
rosa_laevigata	RLG00000005668
rosa_multiflora	Rmu_co8384533.1_g000001 Rmu_co8420189.1_g000001 Rmu_sc0008360.1_g000001 Rmu_sc0010778.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386800 Rroxscaffold_5G00386810
rosa_rugosa	Rorug04G0370700 Rorug04G0370800
rosa_samantha	Rh4AG432300 Rh4BG441500 Rh4CG458800 Rh4DG440200
rosa_wichuraiana	Rw4G036910 Rw4G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 512
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	977
AciI	CCGC	7 cut(s)	36, 207, 349, 519, 542, 924, 977
AclWI	GGATC	3 cut(s)	198, 819, 1653
AcoI	YGGCCR	2 cut(s)	330, 1173
AcsI	RAATTY	2 cut(s)	314, 1441
AcuI	CTGAAG	3 cut(s)	1437, 1473, 1695
AcvI	CACGTG	1 cut(s)	432
AcyI	GRCGYC	3 cut(s)	59, 252, 513
AfaI	GTAC	3 cut(s)	1387, 1510, 1646
AfiI	CCNNNNNNNGG	6 cut(s)	626, 746, 913, 1310, 1762, 1784
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	429
AjnI	CCWGG	7 cut(s)	612, 690, 938, 1175, 1282, 1539, 1605
AjuI	GAANNNNNNNTTGG	2 cut(s)	1488, 1520
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	3 cut(s)	198, 819, 1653
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	293
ApeKI	GCWGC	5 cut(s)	74, 137, 155, 325, 1020
ApoI	RAATTY	2 cut(s)	314, 1441
Asp700I	GAANNNNTTC	1 cut(s)	1601
AspLEI	GCGC	2 cut(s)	61, 515
AspS9I	GGNCC	5 cut(s)	610, 616, 629, 679, 1572
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	6 cut(s)	250, 280, 404, 793, 1175, 1777
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	616, 679, 1572
BalI	TGGCCA	2 cut(s)	332, 1175
BanI	GGYRCC	2 cut(s)	58, 512
BbrPI	CACGTG	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	482
BbvI	GCAGC	5 cut(s)	86, 142, 149, 312, 1007
BccI	CCATC	5 cut(s)	263, 691, 748, 837, 1054
BceAI	ACGGC	4 cut(s)	101, 456, 458, 1815
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BciT130I	CCWGG	7 cut(s)	614, 692, 940, 1177, 1284, 1541, 1607
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	755, 1757
BfmI	CTRYAG	1 cut(s)	1021
BfoI	RGCGCY	2 cut(s)	62, 516
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	6 cut(s)	75, 138, 156, 326, 978, 1021
BlsI	GCNGC	6 cut(s)	76, 139, 157, 327, 979, 1022
Bme1390I	CCNGG	8 cut(s)	614, 633, 692, 940, 1177, 1284, 1541, 1607
Bme18I	GGWCC	3 cut(s)	616, 679, 1572
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	5 cut(s)	610, 616, 629, 679, 1572
BmiI	GGNNCC	5 cut(s)	60, 148, 514, 618, 681
BmrFI	CCNGG	8 cut(s)	614, 633, 692, 940, 1177, 1284, 1541, 1607
BmsI	GCATC	4 cut(s)	850, 970, 1150, 1420
BpmI	CTGGAG	4 cut(s)	1366, 1479, 1504, 1845
Bpu10I	CCTNAGC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	1037
BpuMI	CCSGG	1 cut(s)	633
BsaAI	YACGTR	1 cut(s)	432
BsaHI	GRCGYC	3 cut(s)	59, 252, 513
BsaJI	CCNNGG	5 cut(s)	129, 381, 667, 1606, 1778
BsaWI	WCCGGW	2 cut(s)	17, 989
BsaXI	ACNNNNNCTCC	4 cut(s)	416, 446, 663, 693
Bsc4I	CCNNNNNNNGG	6 cut(s)	626, 746, 913, 1310, 1762, 1784
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	183, 1383
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	7 cut(s)	614, 692, 940, 1177, 1284, 1541, 1607
BseDI	CCNNGG	5 cut(s)	129, 381, 667, 1606, 1778
BseGI	GGATG	4 cut(s)	848, 865, 982, 1435
BseLI	CCNNNNNNNGG	6 cut(s)	626, 746, 913, 1310, 1762, 1784
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	444, 496
BseNI	ACTGG	2 cut(s)	183, 1383
BseRI	GAGGAG	2 cut(s)	425, 1107
BseXI	GCAGC	5 cut(s)	86, 142, 149, 312, 1007
BseYI	CCCAGC	1 cut(s)	1725
BshNI	GGYRCC	2 cut(s)	58, 512
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	6 cut(s)	18, 363, 510, 516, 632, 990
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	6 cut(s)	626, 746, 913, 1310, 1762, 1784
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	293
Bsp143I	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
BspACI	CCGC	7 cut(s)	36, 207, 349, 519, 542, 924, 977
BspCNI	CTCAG	2 cut(s)	445, 495
BspLI	GGNNCC	5 cut(s)	60, 148, 514, 618, 681
BspMAI	CTGCAG	1 cut(s)	1025
BspPI	GGATC	3 cut(s)	198, 819, 1653
BspT107I	GGYRCC	2 cut(s)	58, 512
BspTI	CTTAAG	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	183, 1383
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	5 cut(s)	129, 381, 667, 1606, 1778
BssMI	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
BssNI	GRCGYC	3 cut(s)	59, 252, 513
BssT1I	CCWWGG	3 cut(s)	129, 381, 667
Bst2UI	CCWGG	7 cut(s)	614, 692, 940, 1177, 1284, 1541, 1607
Bst4CI	ACNGT	3 cut(s)	805, 1390, 1765
Bst6I	CTCTTC	1 cut(s)	1674
BstACI	GRCGYC	3 cut(s)	59, 252, 513
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	330, 517, 1025
BstDEI	CTNAG	3 cut(s)	453, 482, 971
BstENI	CCTNNNNNAGG	2 cut(s)	1308, 1782
BstF5I	GGATG	4 cut(s)	848, 865, 982, 1435
BstH2I	RGCGCY	2 cut(s)	62, 516
BstHHI	GCGC	2 cut(s)	61, 515
BstKTI	GATC	8 cut(s)	85, 206, 558, 589, 814, 1090, 1360, 1661
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
BstMWI	GCNNNNNNNGC	4 cut(s)	357, 454, 463, 1017
BstNI	CCWGG	7 cut(s)	614, 692, 940, 1177, 1284, 1541, 1607
BstSCI	CCNGG	8 cut(s)	612, 631, 690, 938, 1175, 1282, 1539, 1605
BstSFI	CTRYAG	1 cut(s)	1021
BstV1I	GCAGC	5 cut(s)	86, 142, 149, 312, 1007
BstX2I	RGATCY	1 cut(s)	1658
BstYI	RGATCY	1 cut(s)	1658
BtsCI	GGATG	4 cut(s)	848, 865, 982, 1435
BtsIMutI	CAGTG	1 cut(s)	1667
Cac8I	GCNNGC	3 cut(s)	330, 517, 1025
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	2 cut(s)	61, 515
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	5 cut(s)	610, 616, 629, 679, 1572
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	1386, 1509, 1645
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	4 cut(s)	626, 746, 830, 1081
CviQI	GTAC	3 cut(s)	1386, 1509, 1645
DdeI	CTNAG	3 cut(s)	453, 482, 971
DinI	GGCGCC	2 cut(s)	60, 514
DpnI	GATC	8 cut(s)	84, 205, 557, 588, 813, 1089, 1359, 1660
DpnII	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
EaeI	YGGCCR	2 cut(s)	330, 1173
Eam1104I	CTCTTC	1 cut(s)	1674
EarI	CTCTTC	1 cut(s)	1674
EciI	GGCGGA	2 cut(s)	196, 531
Eco130I	CCWWGG	3 cut(s)	129, 381, 667
Eco147I	AGGCCT	3 cut(s)	1180, 1372, 1777
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	616, 679, 1572
Eco57I	CTGAAG	3 cut(s)	1437, 1473, 1695
Eco72I	CACGTG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	2 cut(s)	1308, 1782
EcoO109I	RGGNCCY	3 cut(s)	616, 679, 1572
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	7 cut(s)	612, 690, 938, 1175, 1282, 1539, 1605
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	3 cut(s)	129, 381, 667
EgeI	GGCGCC	2 cut(s)	60, 514
EheI	GGCGCC	2 cut(s)	60, 514
ErhI	CCWWGG	3 cut(s)	129, 381, 667
FaeI	CATG	4 cut(s)	629, 749, 833, 1084
FalI	AAGNNNNNCTT	2 cut(s)	1263, 1295
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	4 cut(s)	625, 745, 829, 1080
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	6 cut(s)	75, 138, 156, 326, 978, 1021
FokI	GGATG	4 cut(s)	855, 872, 969, 1442
Fsp4HI	GCNGC	6 cut(s)	75, 138, 156, 326, 978, 1021
FspBI	CTAG	2 cut(s)	755, 1757
GlaI	GCGC	2 cut(s)	60, 514
GluI	GCNGC	6 cut(s)	75, 138, 156, 326, 978, 1021
GsaI	CCCAGC	1 cut(s)	1729
GsuI	CTGGAG	4 cut(s)	1366, 1479, 1504, 1845
HaeII	RGCGCY	2 cut(s)	62, 516
HapII	CCGG	6 cut(s)	18, 363, 510, 516, 632, 990
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	2 cut(s)	61, 515
Hin1I	GRCGYC	3 cut(s)	59, 252, 513
Hin1II	CATG	4 cut(s)	629, 749, 833, 1084
Hin6I	GCGC	2 cut(s)	59, 513
HinP1I	GCGC	2 cut(s)	59, 513
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HpaII	CCGG	6 cut(s)	18, 363, 510, 516, 632, 990
HphI	GGTGA	6 cut(s)	250, 280, 404, 793, 1175, 1777
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188III	TCNNGA	9 cut(s)	150, 319, 755, 1111, 1244, 1308, 1406, 1493, 1824
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	3 cut(s)	805, 1390, 1765
HpyCH4IV	ACGT	2 cut(s)	431, 723
HpyCH4V	TGCA	5 cut(s)	833, 1001, 1023, 1709, 1835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	357, 454, 463, 1017
HpyF3I	CTNAG	3 cut(s)	453, 482, 971
HpySE526I	ACGT	2 cut(s)	431, 723
Hsp92I	GRCGYC	3 cut(s)	59, 252, 513
Hsp92II	CATG	4 cut(s)	629, 749, 833, 1084
HspAI	GCGC	2 cut(s)	59, 513
KasI	GGCGCC	2 cut(s)	58, 512
KroI	GCCGGC	1 cut(s)	515
KroNI	GCCGGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
LmnI	GCTCC	6 cut(s)	134, 365, 412, 709, 1651, 1730
Lsp1109I	GCAGC	5 cut(s)	86, 142, 149, 312, 1007
LweI	GCATC	4 cut(s)	850, 970, 1150, 1420
MaeI	CTAG	2 cut(s)	755, 1757
MaeII	ACGT	2 cut(s)	431, 723
MaeIII	GTNAC	4 cut(s)	303, 548, 1331, 1737
MalI	GATC	8 cut(s)	84, 205, 557, 588, 813, 1089, 1359, 1660
MbiI	CCGCTC	1 cut(s)	977
MboI	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
MboII	GAAGA	9 cut(s)	178, 222, 261, 264, 550, 1430, 1623, 1688, 1691
MflI	RGATCY	1 cut(s)	1658
MlsI	TGGCCA	2 cut(s)	332, 1175
MluCI	AATT	8 cut(s)	28, 63, 314, 404, 735, 851, 1225, 1441
MluNI	TGGCCA	2 cut(s)	332, 1175
Mly113I	GGCGCC	2 cut(s)	59, 513
MlyI	GAGTC	5 cut(s)	378, 556, 1406, 1511, 1829
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	2 cut(s)	332, 1175
MreI	CGCCGGCG	1 cut(s)	515
MroNI	GCCGGC	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	1601
MscI	TGGCCA	2 cut(s)	332, 1175
MseI	TTAA	2 cut(s)	459, 696
Msp20I	TGGCCA	2 cut(s)	332, 1175
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	6 cut(s)	18, 363, 510, 516, 632, 990
MspR9I	CCNGG	8 cut(s)	614, 633, 692, 940, 1177, 1284, 1541, 1607
MvaI	CCWGG	7 cut(s)	614, 692, 940, 1177, 1284, 1541, 1607
MwoI	GCNNNNNNNGC	4 cut(s)	357, 454, 463, 1017
NaeI	GCCGGC	1 cut(s)	517
NarI	GGCGCC	2 cut(s)	59, 513
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
NgoMIV	GCCGGC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	629, 749, 833, 1084
NlaIV	GGNNCC	5 cut(s)	60, 148, 514, 618, 681
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	3 cut(s)	303, 548, 1737
PceI	AGGCCT	3 cut(s)	1180, 1372, 1777
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	1601
PfeI	GAWTC	6 cut(s)	227, 377, 1114, 1240, 1263, 1489
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	1282
PkrI	GCNGC	6 cut(s)	76, 139, 157, 327, 979, 1022
PleI	GAGTC	5 cut(s)	377, 555, 1406, 1511, 1828
PluTI	GGCGCC	2 cut(s)	62, 516
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	5 cut(s)	377, 555, 1406, 1511, 1828
Ppu21I	YACGTR	1 cut(s)	432
PpuMI	RGGWCCY	3 cut(s)	616, 679, 1572
Psp5II	RGGWCCY	3 cut(s)	616, 679, 1572
Psp6I	CCWGG	7 cut(s)	612, 690, 938, 1175, 1282, 1539, 1605
PspCI	CACGTG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	1725
PspGI	CCWGG	7 cut(s)	612, 690, 938, 1175, 1282, 1539, 1605
PspN4I	GGNNCC	5 cut(s)	60, 148, 514, 618, 681
PspPI	GGNCC	5 cut(s)	610, 616, 629, 679, 1572
PspPPI	RGGWCCY	3 cut(s)	616, 679, 1572
PstI	CTGCAG	1 cut(s)	1025
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	1658
RsaI	GTAC	3 cut(s)	1387, 1510, 1646
RsaNI	GTAC	3 cut(s)	1386, 1509, 1645
SaqAI	TTAA	2 cut(s)	459, 696
SatI	GCNGC	6 cut(s)	75, 138, 156, 326, 978, 1021
Sau3AI	GATC	8 cut(s)	82, 203, 555, 586, 811, 1087, 1357, 1658
Sau96I	GGNCC	5 cut(s)	610, 616, 629, 679, 1572
SchI	GAGTC	5 cut(s)	378, 556, 1406, 1511, 1829
ScrFI	CCNGG	8 cut(s)	614, 633, 692, 940, 1177, 1284, 1541, 1607
SfaNI	GCATC	4 cut(s)	850, 970, 1150, 1420
SfcI	CTRYAG	1 cut(s)	1021
SfoI	GGCGCC	2 cut(s)	60, 514
SgrAI	CRCCGGYG	1 cut(s)	515
SinI	GGWCC	3 cut(s)	616, 679, 1572
SmlI	CTYRAG	2 cut(s)	458, 1052
SmoI	CTYRAG	2 cut(s)	458, 1052
Sse9I	AATT	8 cut(s)	28, 63, 314, 404, 735, 851, 1225, 1441
SseBI	AGGCCT	3 cut(s)	1180, 1372, 1777
SsiI	CCGC	7 cut(s)	36, 207, 349, 519, 542, 924, 977
SspDI	GGCGCC	2 cut(s)	58, 512
SspMI	CTAG	2 cut(s)	755, 1757
StuI	AGGCCT	3 cut(s)	1180, 1372, 1777
StyD4I	CCNGG	8 cut(s)	612, 631, 690, 938, 1175, 1282, 1539, 1605
StyI	CCWWGG	3 cut(s)	129, 381, 667
TaaI	ACNGT	3 cut(s)	805, 1390, 1765
TaiI	ACGT	2 cut(s)	434, 726
TaqI	TCGA	3 cut(s)	686, 956, 1090
TasI	AATT	8 cut(s)	28, 63, 314, 404, 735, 851, 1225, 1441
TatI	WGTACW	1 cut(s)	1644
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	6 cut(s)	227, 377, 1114, 1240, 1263, 1489
Tru1I	TTAA	2 cut(s)	459, 696
Tru9I	TTAA	2 cut(s)	459, 696
TscAI	CASTG	1 cut(s)	1674
TseFI	GTSAC	3 cut(s)	303, 548, 1737
TseI	GCWGC	5 cut(s)	74, 137, 155, 325, 1020
Tsp45I	GTSAC	3 cut(s)	303, 548, 1737
TspDTI	ATGAA	4 cut(s)	1437, 1488, 1643, 1854
TspGWI	ACGGA	2 cut(s)	267, 872
TspRI	CASTG	1 cut(s)	1674
Van91I	CCANNNNNTGG	1 cut(s)	746
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	616, 679, 1572
XagI	CCTNNNNNAGG	2 cut(s)	1308, 1782
XapI	RAATTY	2 cut(s)	314, 1441
XbaI	TCTAGA	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	1601
XspI	CTAG	2 cut(s)	755, 1757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.